data_6MLM # _model_server_result.job_id EyogV8hvNpiMbdNnx6lMxw _model_server_result.datetime_utc '2024-12-23 23:25:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mlm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":802}' # _entry.id 6MLM # _exptl.entry_id 6MLM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MLM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 30 1_555 B SG CYS 140 C CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf2 A SG CYS 60 A CYS 68 1_555 A SG CYS 278 A CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? disulf ? disulf3 A SG CYS 72 A CYS 80 1_555 A SG CYS 84 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 105 A CYS 113 1_555 A SG CYS 147 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 282 A CYS 297 1_555 A SG CYS 306 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf6 B SG CYS 147 C CYS 144 1_555 B SG CYS 151 C CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf7 C SG CYS 21 E CYS 22 1_555 C SG CYS 95 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf8 D SG CYS 23 I CYS 23 1_555 D SG CYS 88 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 E SG CYS 22 B CYS 30 1_555 F SG CYS 140 D CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf10 E SG CYS 60 B CYS 68 1_555 E SG CYS 278 B CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? disulf ? disulf11 E SG CYS 72 B CYS 80 1_555 E SG CYS 84 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 E SG CYS 105 B CYS 113 1_555 E SG CYS 147 B CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 E SG CYS 282 B CYS 297 1_555 E SG CYS 306 B CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf14 F SG CYS 147 D CYS 144 1_555 F SG CYS 151 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf15 G SG CYS 21 F CYS 22 1_555 G SG CYS 95 F CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf16 H SG CYS 23 G CYS 23 1_555 H SG CYS 88 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 I SG CYS 22 H CYS 30 1_555 J SG CYS 140 J CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf18 I SG CYS 60 H CYS 68 1_555 I SG CYS 278 H CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? disulf ? disulf19 I SG CYS 72 H CYS 80 1_555 I SG CYS 84 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 I SG CYS 105 H CYS 113 1_555 I SG CYS 147 H CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf21 I SG CYS 282 H CYS 297 1_555 I SG CYS 306 H CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf22 J SG CYS 147 J CYS 144 1_555 J SG CYS 151 J CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf23 K SG CYS 21 K CYS 22 1_555 K SG CYS 95 K CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf24 L SG CYS 23 L CYS 23 1_555 L SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 46 A ASN 54 1_555 M C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 A ND2 ASN 241 A ASN 256 1_555 N C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale3 B ND2 ASN 85 C ASN 82 1_555 O C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale4 E ND2 ASN 46 B ASN 54 1_555 P C1 NAG . B NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale5 E ND2 ASN 241 B ASN 256 1_555 Q C1 NAG . B NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale6 F ND2 ASN 85 D ASN 82 1_555 R C1 NAG . D NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale7 I ND2 ASN 46 H ASN 54 1_555 S C1 NAG . H NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale8 I ND2 ASN 241 H ASN 256 1_555 T C1 NAG . H NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale9 J ND2 ASN 85 J ASN 82 1_555 U C1 NAG . J NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6MLM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 NAG A 1 801 801 NAG NAG . N 5 NAG A 1 802 803 NAG NAG . O 5 NAG C 1 301 802 NAG NAG . P 5 NAG B 1 801 801 NAG NAG . Q 5 NAG B 1 802 803 NAG NAG . R 5 NAG D 1 301 802 NAG NAG . S 5 NAG H 1 801 801 NAG NAG . T 5 NAG H 1 802 803 NAG NAG . U 5 NAG J 1 301 802 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . N 5 158.373 156.334 144.878 1 107.89 ? C1 NAG 802 A 1 HETATM 2 C C2 NAG . . . N 5 159.168 156.152 146.135 1 112.13 ? C2 NAG 802 A 1 HETATM 3 C C3 NAG . . . N 5 160.078 157.28 146.316 1 111.95 ? C3 NAG 802 A 1 HETATM 4 C C4 NAG . . . N 5 161.049 157.291 145.084 1 112.91 ? C4 NAG 802 A 1 HETATM 5 C C5 NAG . . . N 5 160.228 157.434 143.764 1 114.42 ? C5 NAG 802 A 1 HETATM 6 C C6 NAG . . . N 5 161.111 157.443 142.537 1 112.64 ? C6 NAG 802 A 1 HETATM 7 C C7 NAG . . . N 5 158.29 154.905 147.999 1 112.52 ? C7 NAG 802 A 1 HETATM 8 C C8 NAG . . . N 5 157.283 154.77 149.097 1 107.74 ? C8 NAG 802 A 1 HETATM 9 N N2 NAG . . . N 5 158.273 156.003 147.269 1 112.32 ? N2 NAG 802 A 1 HETATM 10 O O3 NAG . . . N 5 160.77 157.155 147.589 1 114.8 ? O3 NAG 802 A 1 HETATM 11 O O4 NAG . . . N 5 161.881 158.391 145.235 1 116.7 ? O4 NAG 802 A 1 HETATM 12 O O5 NAG . . . N 5 159.314 156.34 143.645 1 108.98 ? O5 NAG 802 A 1 HETATM 13 O O6 NAG . . . N 5 161.945 158.591 142.515 1 120.74 ? O6 NAG 802 A 1 HETATM 14 O O7 NAG . . . N 5 159.121 154.024 147.769 1 110.59 ? O7 NAG 802 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #