data_6MLN # _model_server_result.job_id qDeHeGnwN4tX-QvP4zlOdA _model_server_result.datetime_utc '2024-11-23 01:00:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mln # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6MLN # _exptl.entry_id 6MLN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MLN _cell.length_a 36.804 _cell.length_b 59.05 _cell.length_c 115.37 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MLN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 38 _struct_conn.ptnr1_auth_asym_id E _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 38 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 45 _struct_conn.ptnr2_auth_asym_id E _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 45 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.007 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 6MLN _atom_sites.fract_transf_matrix[1][1] 0.027171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ARG E 1 301 1 ARG ARG . C 3 ACT E 1 302 3 ACT ACT . D 3 ACT E 1 303 4 ACT ACT . E 4 GOL E 1 304 1 GOL GOL . F 4 GOL E 1 305 2 GOL GOL . G 4 GOL E 1 306 3 GOL GOL . H 4 GOL E 1 307 4 GOL GOL . I 4 GOL E 1 308 5 GOL GOL . J 5 HOH E 1 401 34 HOH HOH . J 5 HOH E 2 402 307 HOH HOH . J 5 HOH E 3 403 156 HOH HOH . J 5 HOH E 4 404 208 HOH HOH . J 5 HOH E 5 405 97 HOH HOH . J 5 HOH E 6 406 38 HOH HOH . J 5 HOH E 7 407 231 HOH HOH . J 5 HOH E 8 408 213 HOH HOH . J 5 HOH E 9 409 294 HOH HOH . J 5 HOH E 10 410 92 HOH HOH . J 5 HOH E 11 411 149 HOH HOH . J 5 HOH E 12 412 12 HOH HOH . J 5 HOH E 13 413 80 HOH HOH . J 5 HOH E 14 414 165 HOH HOH . J 5 HOH E 15 415 305 HOH HOH . J 5 HOH E 16 416 91 HOH HOH . J 5 HOH E 17 417 191 HOH HOH . J 5 HOH E 18 418 139 HOH HOH . J 5 HOH E 19 419 5 HOH HOH . J 5 HOH E 20 420 145 HOH HOH . J 5 HOH E 21 421 164 HOH HOH . J 5 HOH E 22 422 96 HOH HOH . J 5 HOH E 23 423 9 HOH HOH . J 5 HOH E 24 424 15 HOH HOH . J 5 HOH E 25 425 119 HOH HOH . J 5 HOH E 26 426 47 HOH HOH . J 5 HOH E 27 427 6 HOH HOH . J 5 HOH E 28 428 79 HOH HOH . J 5 HOH E 29 429 116 HOH HOH . J 5 HOH E 30 430 48 HOH HOH . J 5 HOH E 31 431 113 HOH HOH . J 5 HOH E 32 432 171 HOH HOH . J 5 HOH E 33 433 10 HOH HOH . J 5 HOH E 34 434 133 HOH HOH . J 5 HOH E 35 435 152 HOH HOH . J 5 HOH E 36 436 107 HOH HOH . J 5 HOH E 37 437 202 HOH HOH . J 5 HOH E 38 438 295 HOH HOH . J 5 HOH E 39 439 3 HOH HOH . J 5 HOH E 40 440 57 HOH HOH . J 5 HOH E 41 441 150 HOH HOH . J 5 HOH E 42 442 288 HOH HOH . J 5 HOH E 43 443 162 HOH HOH . J 5 HOH E 44 444 37 HOH HOH . J 5 HOH E 45 445 7 HOH HOH . J 5 HOH E 46 446 300 HOH HOH . J 5 HOH E 47 447 135 HOH HOH . J 5 HOH E 48 448 55 HOH HOH . J 5 HOH E 49 449 24 HOH HOH . J 5 HOH E 50 450 30 HOH HOH . J 5 HOH E 51 451 246 HOH HOH . J 5 HOH E 52 452 131 HOH HOH . J 5 HOH E 53 453 170 HOH HOH . J 5 HOH E 54 454 120 HOH HOH . J 5 HOH E 55 455 230 HOH HOH . J 5 HOH E 56 456 101 HOH HOH . J 5 HOH E 57 457 146 HOH HOH . J 5 HOH E 58 458 64 HOH HOH . J 5 HOH E 59 459 4 HOH HOH . J 5 HOH E 60 460 78 HOH HOH . J 5 HOH E 61 461 28 HOH HOH . J 5 HOH E 62 462 41 HOH HOH . J 5 HOH E 63 463 31 HOH HOH . J 5 HOH E 64 464 147 HOH HOH . J 5 HOH E 65 465 44 HOH HOH . J 5 HOH E 66 466 23 HOH HOH . J 5 HOH E 67 467 161 HOH HOH . J 5 HOH E 68 468 124 HOH HOH . J 5 HOH E 69 469 16 HOH HOH . J 5 HOH E 70 470 185 HOH HOH . J 5 HOH E 71 471 14 HOH HOH . J 5 HOH E 72 472 18 HOH HOH . J 5 HOH E 73 473 26 HOH HOH . J 5 HOH E 74 474 274 HOH HOH . J 5 HOH E 75 475 21 HOH HOH . J 5 HOH E 76 476 284 HOH HOH . J 5 HOH E 77 477 40 HOH HOH . J 5 HOH E 78 478 42 HOH HOH . J 5 HOH E 79 479 158 HOH HOH . J 5 HOH E 80 480 245 HOH HOH . J 5 HOH E 81 481 179 HOH HOH . J 5 HOH E 82 482 69 HOH HOH . J 5 HOH E 83 483 148 HOH HOH . J 5 HOH E 84 484 279 HOH HOH . J 5 HOH E 85 485 180 HOH HOH . J 5 HOH E 86 486 163 HOH HOH . J 5 HOH E 87 487 104 HOH HOH . J 5 HOH E 88 488 193 HOH HOH . J 5 HOH E 89 489 122 HOH HOH . J 5 HOH E 90 490 167 HOH HOH . J 5 HOH E 91 491 51 HOH HOH . J 5 HOH E 92 492 1 HOH HOH . J 5 HOH E 93 493 66 HOH HOH . J 5 HOH E 94 494 293 HOH HOH . J 5 HOH E 95 495 72 HOH HOH . J 5 HOH E 96 496 53 HOH HOH . J 5 HOH E 97 497 13 HOH HOH . J 5 HOH E 98 498 128 HOH HOH . J 5 HOH E 99 499 43 HOH HOH . J 5 HOH E 100 500 36 HOH HOH . J 5 HOH E 101 501 183 HOH HOH . J 5 HOH E 102 502 2 HOH HOH . J 5 HOH E 103 503 89 HOH HOH . J 5 HOH E 104 504 137 HOH HOH . J 5 HOH E 105 505 157 HOH HOH . J 5 HOH E 106 506 227 HOH HOH . J 5 HOH E 107 507 88 HOH HOH . J 5 HOH E 108 508 224 HOH HOH . J 5 HOH E 109 509 70 HOH HOH . J 5 HOH E 110 510 50 HOH HOH . J 5 HOH E 111 511 172 HOH HOH . J 5 HOH E 112 512 138 HOH HOH . J 5 HOH E 113 513 123 HOH HOH . J 5 HOH E 114 514 45 HOH HOH . J 5 HOH E 115 515 247 HOH HOH . J 5 HOH E 116 516 32 HOH HOH . J 5 HOH E 117 517 106 HOH HOH . J 5 HOH E 118 518 228 HOH HOH . J 5 HOH E 119 519 22 HOH HOH . J 5 HOH E 120 520 39 HOH HOH . J 5 HOH E 121 521 204 HOH HOH . J 5 HOH E 122 522 189 HOH HOH . J 5 HOH E 123 523 76 HOH HOH . J 5 HOH E 124 524 63 HOH HOH . J 5 HOH E 125 525 296 HOH HOH . J 5 HOH E 126 526 302 HOH HOH . J 5 HOH E 127 527 199 HOH HOH . J 5 HOH E 128 528 265 HOH HOH . J 5 HOH E 129 529 82 HOH HOH . J 5 HOH E 130 530 81 HOH HOH . J 5 HOH E 131 531 258 HOH HOH . J 5 HOH E 132 532 11 HOH HOH . J 5 HOH E 133 533 283 HOH HOH . J 5 HOH E 134 534 141 HOH HOH . J 5 HOH E 135 535 61 HOH HOH . J 5 HOH E 136 536 186 HOH HOH . J 5 HOH E 137 537 56 HOH HOH . J 5 HOH E 138 538 19 HOH HOH . J 5 HOH E 139 539 93 HOH HOH . J 5 HOH E 140 540 73 HOH HOH . J 5 HOH E 141 541 17 HOH HOH . J 5 HOH E 142 542 261 HOH HOH . J 5 HOH E 143 543 184 HOH HOH . J 5 HOH E 144 544 103 HOH HOH . J 5 HOH E 145 545 98 HOH HOH . J 5 HOH E 146 546 33 HOH HOH . J 5 HOH E 147 547 286 HOH HOH . J 5 HOH E 148 548 27 HOH HOH . J 5 HOH E 149 549 95 HOH HOH . J 5 HOH E 150 550 154 HOH HOH . J 5 HOH E 151 551 20 HOH HOH . J 5 HOH E 152 552 285 HOH HOH . J 5 HOH E 153 553 68 HOH HOH . J 5 HOH E 154 554 175 HOH HOH . J 5 HOH E 155 555 253 HOH HOH . J 5 HOH E 156 556 264 HOH HOH . J 5 HOH E 157 557 132 HOH HOH . J 5 HOH E 158 558 182 HOH HOH . J 5 HOH E 159 559 129 HOH HOH . J 5 HOH E 160 560 262 HOH HOH . J 5 HOH E 161 561 58 HOH HOH . J 5 HOH E 162 562 8 HOH HOH . J 5 HOH E 163 563 75 HOH HOH . J 5 HOH E 164 564 181 HOH HOH . J 5 HOH E 165 565 84 HOH HOH . J 5 HOH E 166 566 109 HOH HOH . J 5 HOH E 167 567 239 HOH HOH . J 5 HOH E 168 568 117 HOH HOH . J 5 HOH E 169 569 267 HOH HOH . J 5 HOH E 170 570 140 HOH HOH . J 5 HOH E 171 571 77 HOH HOH . J 5 HOH E 172 572 59 HOH HOH . J 5 HOH E 173 573 236 HOH HOH . J 5 HOH E 174 574 201 HOH HOH . J 5 HOH E 175 575 87 HOH HOH . J 5 HOH E 176 576 65 HOH HOH . J 5 HOH E 177 577 240 HOH HOH . J 5 HOH E 178 578 126 HOH HOH . J 5 HOH E 179 579 71 HOH HOH . J 5 HOH E 180 580 60 HOH HOH . J 5 HOH E 181 581 90 HOH HOH . J 5 HOH E 182 582 248 HOH HOH . J 5 HOH E 183 583 121 HOH HOH . J 5 HOH E 184 584 271 HOH HOH . J 5 HOH E 185 585 173 HOH HOH . J 5 HOH E 186 586 46 HOH HOH . J 5 HOH E 187 587 238 HOH HOH . J 5 HOH E 188 588 142 HOH HOH . J 5 HOH E 189 589 177 HOH HOH . J 5 HOH E 190 590 108 HOH HOH . J 5 HOH E 191 591 178 HOH HOH . J 5 HOH E 192 592 222 HOH HOH . J 5 HOH E 193 593 270 HOH HOH . J 5 HOH E 194 594 102 HOH HOH . J 5 HOH E 195 595 166 HOH HOH . J 5 HOH E 196 596 136 HOH HOH . J 5 HOH E 197 597 187 HOH HOH . J 5 HOH E 198 598 176 HOH HOH . J 5 HOH E 199 599 74 HOH HOH . J 5 HOH E 200 600 118 HOH HOH . J 5 HOH E 201 601 221 HOH HOH . J 5 HOH E 202 602 298 HOH HOH . J 5 HOH E 203 603 160 HOH HOH . J 5 HOH E 204 604 192 HOH HOH . J 5 HOH E 205 605 153 HOH HOH . J 5 HOH E 206 606 299 HOH HOH . J 5 HOH E 207 607 169 HOH HOH . J 5 HOH E 208 608 111 HOH HOH . J 5 HOH E 209 609 49 HOH HOH . J 5 HOH E 210 610 313 HOH HOH . J 5 HOH E 211 611 269 HOH HOH . J 5 HOH E 212 612 198 HOH HOH . J 5 HOH E 213 613 197 HOH HOH . J 5 HOH E 214 614 151 HOH HOH . J 5 HOH E 215 615 315 HOH HOH . J 5 HOH E 216 616 194 HOH HOH . J 5 HOH E 217 617 143 HOH HOH . J 5 HOH E 218 618 268 HOH HOH . J 5 HOH E 219 619 188 HOH HOH . J 5 HOH E 220 620 303 HOH HOH . J 5 HOH E 221 621 273 HOH HOH . J 5 HOH E 222 622 278 HOH HOH . J 5 HOH E 223 623 212 HOH HOH . J 5 HOH E 224 624 242 HOH HOH . J 5 HOH E 225 625 287 HOH HOH . J 5 HOH E 226 626 314 HOH HOH . J 5 HOH E 227 627 159 HOH HOH . J 5 HOH E 228 628 235 HOH HOH . J 5 HOH E 229 629 174 HOH HOH . J 5 HOH E 230 630 54 HOH HOH . J 5 HOH E 231 631 290 HOH HOH . J 5 HOH E 232 632 86 HOH HOH . J 5 HOH E 233 633 289 HOH HOH . J 5 HOH E 234 634 276 HOH HOH . J 5 HOH E 235 635 309 HOH HOH . J 5 HOH E 236 636 310 HOH HOH . J 5 HOH E 237 637 254 HOH HOH . J 5 HOH E 238 638 275 HOH HOH . J 5 HOH E 239 639 306 HOH HOH . J 5 HOH E 240 640 259 HOH HOH . J 5 HOH E 241 641 272 HOH HOH . J 5 HOH E 242 642 29 HOH HOH . J 5 HOH E 243 643 127 HOH HOH . J 5 HOH E 244 644 99 HOH HOH . J 5 HOH E 245 645 312 HOH HOH . J 5 HOH E 246 646 203 HOH HOH . J 5 HOH E 247 647 263 HOH HOH . J 5 HOH E 248 648 218 HOH HOH . J 5 HOH E 249 649 243 HOH HOH . J 5 HOH E 250 650 292 HOH HOH . J 5 HOH E 251 651 311 HOH HOH . J 5 HOH E 252 652 308 HOH HOH . J 5 HOH E 253 653 241 HOH HOH . J 5 HOH E 254 654 190 HOH HOH . J 5 HOH E 255 655 301 HOH HOH . J 5 HOH E 256 656 25 HOH HOH . J 5 HOH E 257 657 207 HOH HOH . J 5 HOH E 258 658 67 HOH HOH . J 5 HOH E 259 659 114 HOH HOH . J 5 HOH E 260 660 291 HOH HOH . J 5 HOH E 261 661 214 HOH HOH . J 5 HOH E 262 662 215 HOH HOH . J 5 HOH E 263 663 304 HOH HOH . J 5 HOH E 264 664 62 HOH HOH . J 5 HOH E 265 665 130 HOH HOH . J 5 HOH E 266 666 297 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -2.629 -2.072 -23.631 1 42.15 ? C1 GOL 305 E 1 HETATM 2 O O1 GOL . . . F 4 -2.298 -1.231 -24.718 1 39.93 ? O1 GOL 305 E 1 HETATM 3 C C2 GOL . . . F 4 -1.656 -1.825 -22.481 1 38.26 ? C2 GOL 305 E 1 HETATM 4 O O2 GOL . . . F 4 -0.672 -0.886 -22.861 1 31.21 ? O2 GOL 305 E 1 HETATM 5 C C3 GOL . . . F 4 -0.937 -3.119 -22.179 1 28.01 ? C3 GOL 305 E 1 HETATM 6 O O3 GOL . . . F 4 -1.415 -3.722 -21.011 1 22.1 ? O3 GOL 305 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #