data_6MLR # _model_server_result.job_id 5CTDuR5lBkc06GVHGIDIDQ _model_server_result.datetime_utc '2025-04-06 09:39:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mlr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 6MLR # _exptl.entry_id 6MLR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MLR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 224 n n PG O2G GTP sing 225 n n PG O3G GTP sing 226 n n PG O3B GTP sing 227 n n O2G HOG2 GTP sing 228 n n O3G HOG3 GTP sing 229 n n O3B PB GTP sing 230 n n PB O1B GTP doub 231 n n PB O2B GTP sing 232 n n PB O3A GTP sing 233 n n O2B HOB2 GTP sing 234 n n O3A PA GTP sing 235 n n PA O1A GTP doub 236 n n PA O2A GTP sing 237 n n PA O5' GTP sing 238 n n O2A HOA2 GTP sing 239 n n O5' C5' GTP sing 240 n n C5' C4' GTP sing 241 n n C5' H5' GTP sing 242 n n C5' "H5''" GTP sing 243 n n C4' O4' GTP sing 244 n n C4' C3' GTP sing 245 n n C4' H4' GTP sing 246 n n O4' C1' GTP sing 247 n n C3' O3' GTP sing 248 n n C3' C2' GTP sing 249 n n C3' H3' GTP sing 250 n n O3' HO3' GTP sing 251 n n C2' O2' GTP sing 252 n n C2' C1' GTP sing 253 n n C2' H2' GTP sing 254 n n O2' HO2' GTP sing 255 n n C1' N9 GTP sing 256 n n C1' H1' GTP sing 257 n n N9 C8 GTP sing 258 n y N9 C4 GTP sing 259 n y C8 N7 GTP doub 260 n y C8 H8 GTP sing 261 n n N7 C5 GTP sing 262 n y C5 C6 GTP sing 263 n n C5 C4 GTP doub 264 n y C6 O6 GTP doub 265 n n C6 N1 GTP sing 266 n n N1 C2 GTP sing 267 n n N1 HN1 GTP sing 268 n n C2 N2 GTP sing 269 n n C2 N3 GTP doub 270 n n N2 HN21 GTP sing 271 n n N2 HN22 GTP sing 272 n n N3 C4 GTP sing 273 n n # _atom_sites.entry_id 6MLR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 500 500 GTP GTP . E 5 GDP B 1 600 600 GDP GDP . F 6 TA1 B 1 601 601 TA1 TA1 . G 7 ANP C 1 1401 1401 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 4 35.377 81.255 101.743 1 102.02 ? PG GTP 500 A 1 HETATM 2 O O1G GTP . . . D 4 35.747 79.944 101.107 1 102.02 ? O1G GTP 500 A 1 HETATM 3 O O2G GTP . . . D 4 35.227 81.072 103.227 1 102.02 ? O2G GTP 500 A 1 HETATM 4 O O3G GTP . . . D 4 36.394 82.329 101.472 1 102.02 ? O3G GTP 500 A 1 HETATM 5 O O3B GTP . . . D 4 33.983 81.789 101.182 1 102.02 ? O3B GTP 500 A 1 HETATM 6 P PB GTP . . . D 4 33.939 82.282 99.669 1 102.02 ? PB GTP 500 A 1 HETATM 7 O O1B GTP . . . D 4 35.136 81.75 98.934 1 102.02 ? O1B GTP 500 A 1 HETATM 8 O O2B GTP . . . D 4 33.792 83.769 99.556 1 102.02 ? O2B GTP 500 A 1 HETATM 9 O O3A GTP . . . D 4 32.622 81.547 99.173 1 102.02 ? O3A GTP 500 A 1 HETATM 10 P PA GTP . . . D 4 32.191 81.56 97.636 1 102.02 ? PA GTP 500 A 1 HETATM 11 O O1A GTP . . . D 4 33.362 81.622 96.698 1 102.02 ? O1A GTP 500 A 1 HETATM 12 O O2A GTP . . . D 4 31.465 80.264 97.495 1 102.02 ? O2A GTP 500 A 1 HETATM 13 O O5' GTP . . . D 4 31.167 82.779 97.435 1 102.02 ? O5' GTP 500 A 1 HETATM 14 C C5' GTP . . . D 4 30.329 83.143 98.496 1 102.02 ? C5' GTP 500 A 1 HETATM 15 C C4' GTP . . . D 4 28.893 83.026 98.02 1 102.02 ? C4' GTP 500 A 1 HETATM 16 O O4' GTP . . . D 4 28.817 82.092 96.97 1 102.02 ? O4' GTP 500 A 1 HETATM 17 C C3' GTP . . . D 4 27.96 82.524 99.099 1 102.02 ? C3' GTP 500 A 1 HETATM 18 O O3' GTP . . . D 4 27.287 83.6 99.696 1 102.02 ? O3' GTP 500 A 1 HETATM 19 C C2' GTP . . . D 4 26.962 81.679 98.354 1 102.02 ? C2' GTP 500 A 1 HETATM 20 O O2' GTP . . . D 4 25.776 82.413 98.223 1 102.02 ? O2' GTP 500 A 1 HETATM 21 C C1' GTP . . . D 4 27.565 81.446 96.986 1 102.02 ? C1' GTP 500 A 1 HETATM 22 N N9 GTP . . . D 4 27.809 80.018 96.846 1 102.02 ? N9 GTP 500 A 1 HETATM 23 C C8 GTP . . . D 4 28.579 79.263 97.671 1 102.02 ? C8 GTP 500 A 1 HETATM 24 N N7 GTP . . . D 4 28.579 77.997 97.221 1 102.02 ? N7 GTP 500 A 1 HETATM 25 C C5 GTP . . . D 4 27.811 77.945 96.128 1 102.02 ? C5 GTP 500 A 1 HETATM 26 C C6 GTP . . . D 4 27.493 76.906 95.303 1 102.02 ? C6 GTP 500 A 1 HETATM 27 O O6 GTP . . . D 4 27.939 75.797 95.538 1 102.02 ? O6 GTP 500 A 1 HETATM 28 N N1 GTP . . . D 4 26.683 77.129 94.227 1 102.02 ? N1 GTP 500 A 1 HETATM 29 C C2 GTP . . . D 4 26.207 78.399 93.995 1 102.02 ? C2 GTP 500 A 1 HETATM 30 N N2 GTP . . . D 4 25.419 78.626 92.956 1 102.02 ? N2 GTP 500 A 1 HETATM 31 N N3 GTP . . . D 4 26.536 79.439 94.824 1 102.02 ? N3 GTP 500 A 1 HETATM 32 C C4 GTP . . . D 4 27.334 79.207 95.872 1 102.02 ? C4 GTP 500 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #