data_6MM2 # _model_server_result.job_id ErIFIETge2bwy3eKFYqjNA _model_server_result.datetime_utc '2025-08-31 03:42:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mm2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6MM2 # _exptl.entry_id 6MM2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6MM2 _cell.length_a 52.058 _cell.length_b 52.058 _cell.length_c 95.214 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall 'R 3' _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 52.058 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 26.029 45.08355 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 41 A GLY 41 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc2 A OD1 ASN 44 A ASN 44 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc3 A OE1 GLU 50 A GLU 50 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc4 A OE2 GLU 50 A GLU 50 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc5 B O1G ATP . A ATP 201 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc6 B O2B ATP . A ATP 201 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc7 C CA CA . A CA 202 1_555 E O HOH . A HOH 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6MM2 _atom_sites.fract_transf_matrix[1][1] 0.019209 _atom_sites.fract_transf_matrix[1][2] 0.011091 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 201 102 ATP ATP . C 3 CA A 1 202 1 CA CA . D 4 CL A 1 203 1 CL CL . E 5 HOH A 1 301 78 HOH HOH . E 5 HOH A 2 302 64 HOH HOH . E 5 HOH A 3 303 80 HOH HOH . E 5 HOH A 4 304 23 HOH HOH . E 5 HOH A 5 305 59 HOH HOH . E 5 HOH A 6 306 100 HOH HOH . E 5 HOH A 7 307 8 HOH HOH . E 5 HOH A 8 308 98 HOH HOH . E 5 HOH A 9 309 91 HOH HOH . E 5 HOH A 10 310 19 HOH HOH . E 5 HOH A 11 311 34 HOH HOH . E 5 HOH A 12 312 93 HOH HOH . E 5 HOH A 13 313 76 HOH HOH . E 5 HOH A 14 314 43 HOH HOH . E 5 HOH A 15 315 32 HOH HOH . E 5 HOH A 16 316 121 HOH HOH . E 5 HOH A 17 317 18 HOH HOH . E 5 HOH A 18 318 12 HOH HOH . E 5 HOH A 19 319 2 HOH HOH . E 5 HOH A 20 320 17 HOH HOH . E 5 HOH A 21 321 14 HOH HOH . E 5 HOH A 22 322 28 HOH HOH . E 5 HOH A 23 323 134 HOH HOH . E 5 HOH A 24 324 5 HOH HOH . E 5 HOH A 25 325 26 HOH HOH . E 5 HOH A 26 326 113 HOH HOH . E 5 HOH A 27 327 3 HOH HOH . E 5 HOH A 28 328 77 HOH HOH . E 5 HOH A 29 329 60 HOH HOH . E 5 HOH A 30 330 30 HOH HOH . E 5 HOH A 31 331 45 HOH HOH . E 5 HOH A 32 332 35 HOH HOH . E 5 HOH A 33 333 128 HOH HOH . E 5 HOH A 34 334 24 HOH HOH . E 5 HOH A 35 335 1 HOH HOH . E 5 HOH A 36 336 137 HOH HOH . E 5 HOH A 37 337 11 HOH HOH . E 5 HOH A 38 338 58 HOH HOH . E 5 HOH A 39 339 102 HOH HOH . E 5 HOH A 40 340 6 HOH HOH . E 5 HOH A 41 341 96 HOH HOH . E 5 HOH A 42 342 29 HOH HOH . E 5 HOH A 43 343 20 HOH HOH . E 5 HOH A 44 344 13 HOH HOH . E 5 HOH A 45 345 27 HOH HOH . E 5 HOH A 46 346 31 HOH HOH . E 5 HOH A 47 347 122 HOH HOH . E 5 HOH A 48 348 4 HOH HOH . E 5 HOH A 49 349 63 HOH HOH . E 5 HOH A 50 350 36 HOH HOH . E 5 HOH A 51 351 88 HOH HOH . E 5 HOH A 52 352 7 HOH HOH . E 5 HOH A 53 353 10 HOH HOH . E 5 HOH A 54 354 127 HOH HOH . E 5 HOH A 55 355 69 HOH HOH . E 5 HOH A 56 356 39 HOH HOH . E 5 HOH A 57 357 104 HOH HOH . E 5 HOH A 58 358 9 HOH HOH . E 5 HOH A 59 359 21 HOH HOH . E 5 HOH A 60 360 50 HOH HOH . E 5 HOH A 61 361 73 HOH HOH . E 5 HOH A 62 362 142 HOH HOH . E 5 HOH A 63 363 79 HOH HOH . E 5 HOH A 64 364 92 HOH HOH . E 5 HOH A 65 365 94 HOH HOH . E 5 HOH A 66 366 111 HOH HOH . E 5 HOH A 67 367 48 HOH HOH . E 5 HOH A 68 368 107 HOH HOH . E 5 HOH A 69 369 54 HOH HOH . E 5 HOH A 70 370 114 HOH HOH . E 5 HOH A 71 371 129 HOH HOH . E 5 HOH A 72 372 47 HOH HOH . E 5 HOH A 73 373 90 HOH HOH . E 5 HOH A 74 374 89 HOH HOH . E 5 HOH A 75 375 33 HOH HOH . E 5 HOH A 76 376 115 HOH HOH . E 5 HOH A 77 377 145 HOH HOH . E 5 HOH A 78 378 99 HOH HOH . E 5 HOH A 79 379 143 HOH HOH . E 5 HOH A 80 380 53 HOH HOH . E 5 HOH A 81 381 87 HOH HOH . E 5 HOH A 82 382 84 HOH HOH . E 5 HOH A 83 383 140 HOH HOH . E 5 HOH A 84 384 146 HOH HOH . E 5 HOH A 85 385 110 HOH HOH . E 5 HOH A 86 386 49 HOH HOH . E 5 HOH A 87 387 82 HOH HOH . E 5 HOH A 88 388 120 HOH HOH . E 5 HOH A 89 389 126 HOH HOH . E 5 HOH A 90 390 147 HOH HOH . E 5 HOH A 91 391 105 HOH HOH . E 5 HOH A 92 392 16 HOH HOH . E 5 HOH A 93 393 119 HOH HOH . E 5 HOH A 94 394 116 HOH HOH . E 5 HOH A 95 395 112 HOH HOH . E 5 HOH A 96 396 61 HOH HOH . E 5 HOH A 97 397 97 HOH HOH . E 5 HOH A 98 398 131 HOH HOH . E 5 HOH A 99 399 108 HOH HOH . E 5 HOH A 100 400 130 HOH HOH . E 5 HOH A 101 401 51 HOH HOH . E 5 HOH A 102 402 124 HOH HOH . E 5 HOH A 103 403 56 HOH HOH . E 5 HOH A 104 404 86 HOH HOH . E 5 HOH A 105 405 70 HOH HOH . E 5 HOH A 106 406 68 HOH HOH . E 5 HOH A 107 407 81 HOH HOH . E 5 HOH A 108 408 38 HOH HOH . E 5 HOH A 109 409 55 HOH HOH . E 5 HOH A 110 410 106 HOH HOH . E 5 HOH A 111 411 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 9.066 19.77 6.497 1 16.12 ? PG ATP 201 A 1 HETATM 2 O O1G ATP . . . B 2 8.807 21.202 6.206 1 17.38 ? O1G ATP 201 A 1 HETATM 3 O O2G ATP . . . B 2 8.121 19.271 7.604 1 16.91 ? O2G ATP 201 A 1 HETATM 4 O O3G ATP . . . B 2 10.462 19.37 6.81 1 16.08 ? O3G ATP 201 A 1 HETATM 5 P PB ATP . . . B 2 7.289 18.967 4.342 1 18.12 ? PB ATP 201 A 1 HETATM 6 O O1B ATP . . . B 2 6.414 17.89 4.803 1 18.66 ? O1B ATP 201 A 1 HETATM 7 O O2B ATP . . . B 2 6.722 20.332 4.31 1 18.56 ? O2B ATP 201 A 1 HETATM 8 O O3B ATP . . . B 2 8.688 18.93 5.156 1 16.87 ? O3B ATP 201 A 1 HETATM 9 P PA ATP . . . B 2 8.781 17.78 2.047 1 16.15 ? PA ATP 201 A 1 HETATM 10 O O1A ATP . . . B 2 8.895 18.295 0.593 1 19.05 ? O1A ATP 201 A 1 HETATM 11 O O2A ATP . . . B 2 8.397 16.39 2.199 1 17.77 ? O2A ATP 201 A 1 HETATM 12 O O3A ATP . . . B 2 7.781 18.802 2.769 1 19.24 ? O3A ATP 201 A 1 HETATM 13 O O5' ATP . . . B 2 10.245 18.09 2.736 1 15.46 ? O5' ATP 201 A 1 HETATM 14 C C5' ATP . . . B 2 10.846 17.139 3.578 1 15.22 ? C5' ATP 201 A 1 HETATM 15 C C4' ATP . . . B 2 12.346 17.458 3.618 1 13.77 ? C4' ATP 201 A 1 HETATM 16 O O4' ATP . . . B 2 12.854 17.353 2.343 1 14.09 ? O4' ATP 201 A 1 HETATM 17 C C3' ATP . . . B 2 12.675 18.839 4.182 1 13.62 ? C3' ATP 201 A 1 HETATM 18 O O3' ATP . . . B 2 12.742 18.88 5.56 1 14.66 ? O3' ATP 201 A 1 HETATM 19 C C2' ATP . . . B 2 14.042 19.037 3.446 1 13.3 ? C2' ATP 201 A 1 HETATM 20 O O2' ATP . . . B 2 15.052 18.382 4.283 1 13.71 ? O2' ATP 201 A 1 HETATM 21 C C1' ATP . . . B 2 13.943 18.441 2.232 1 13.47 ? C1' ATP 201 A 1 HETATM 22 N N9 ATP . . . B 2 13.518 19.309 1.112 1 13.69 ? N9 ATP 201 A 1 HETATM 23 C C8 ATP . . . B 2 12.251 19.64 0.726 1 14.62 ? C8 ATP 201 A 1 HETATM 24 N N7 ATP . . . B 2 12.295 20.5 -0.294 1 14.92 ? N7 ATP 201 A 1 HETATM 25 C C5 ATP . . . B 2 13.635 20.705 -0.519 1 13.8 ? C5 ATP 201 A 1 HETATM 26 C C6 ATP . . . B 2 14.293 21.462 -1.442 1 14.23 ? C6 ATP 201 A 1 HETATM 27 N N6 ATP . . . B 2 13.697 22.302 -2.415 1 15.38 ? N6 ATP 201 A 1 HETATM 28 N N1 ATP . . . B 2 15.636 21.463 -1.448 1 13.38 ? N1 ATP 201 A 1 HETATM 29 C C2 ATP . . . B 2 16.298 20.72 -0.559 1 13.16 ? C2 ATP 201 A 1 HETATM 30 N N3 ATP . . . B 2 15.716 19.939 0.379 1 12.97 ? N3 ATP 201 A 1 HETATM 31 C C4 ATP . . . B 2 14.374 19.96 0.342 1 12.69 ? C4 ATP 201 A 1 HETATM 32 H "H5'1" ATP . . . B 2 10.469 17.197 4.47 1 18.27 ? "H5'1" ATP 201 A 1 HETATM 33 H "H5'2" ATP . . . B 2 10.705 16.246 3.226 1 18.27 ? "H5'2" ATP 201 A 1 HETATM 34 H H4' ATP . . . B 2 12.81 16.844 4.21 1 16.53 ? H4' ATP 201 A 1 HETATM 35 H H3' ATP . . . B 2 12.02 19.524 3.976 1 16.35 ? H3' ATP 201 A 1 HETATM 36 H HO3' ATP . . . B 2 12.123 19.378 5.856 1 17.6 ? HO3' ATP 201 A 1 HETATM 37 H H2' ATP . . . B 2 14.238 19.974 3.288 1 15.97 ? H2' ATP 201 A 1 HETATM 38 H HO2' ATP . . . B 2 15.797 18.789 4.204 1 16.46 ? HO2' ATP 201 A 1 HETATM 39 H H1' ATP . . . B 2 14.836 18.099 2.073 1 16.17 ? H1' ATP 201 A 1 HETATM 40 H H8 ATP . . . B 2 11.473 19.314 1.117 1 17.55 ? H8 ATP 201 A 1 HETATM 41 H HN61 ATP . . . B 2 14.194 22.755 -2.952 1 18.46 ? HN61 ATP 201 A 1 HETATM 42 H HN62 ATP . . . B 2 12.84 22.357 -2.467 1 18.46 ? HN62 ATP 201 A 1 HETATM 43 H H2 ATP . . . B 2 17.227 20.74 -0.585 1 15.81 ? H2 ATP 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #