data_6MM5
#
_model_server_result.job_id            7vsBkvldBdZ2nGvsaspFlw 
_model_server_result.datetime_utc      '2024-11-21 23:43:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mm5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2901}' 
#
_entry.id    6MM5 
#
_exptl.entry_id    6MM5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MM5 
_cell.length_a            54.861 
_cell.length_b            74.881 
_cell.length_c            98.561 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MM5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TRP 185 E TRP 196 1_555 A N TPO 186 E TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 A C TPO 186 E TPO 197 1_555 A N LEU 187 E LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale3 A C VAL 326 E VAL 337 1_555 A N SEP 327 E SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C SEP 327 E SEP 338 1_555 A N ILE 328 E ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
metalc ? metalc1 A OD1 ASN 160 E ASN 171 1_555 C MG MG . E MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc2 A OD2 ASP 173 E ASP 184 1_555 C MG MG . E MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc3 C MG MG . E MG 401 1_555 D O2B ANP . E ANP 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc4 C MG MG . E MG 401 1_555 D O2G ANP . E ANP 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc5 C MG MG . E MG 401 1_555 D O2A ANP . E ANP 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc6 C MG MG . E MG 401 1_555 F O HOH . E HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 133 n n 
C1 C2 EDO sing 134 n n 
C1 H11 EDO sing 135 n n 
C1 H12 EDO sing 136 n n 
O1 HO1 EDO sing 137 n n 
C2 O2 EDO sing 138 n n 
C2 H21 EDO sing 139 n n 
C2 H22 EDO sing 140 n n 
O2 HO2 EDO sing 141 n n 
#
_atom_sites.entry_id                     6MM5 
_atom_sites.fract_transf_matrix[1][1]    0.018228 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013355 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010146 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG E 1 401 403 MG MG . 
D 4 ANP E 1 402 600 ANP ANP . 
E 5 EDO C 1 2901 1 EDO EDO . 
F 6 HOH E 1 501 153 HOH HOH . 
F 6 HOH E 2 502 163 HOH HOH . 
F 6 HOH E 3 503 74 HOH HOH . 
F 6 HOH E 4 504 178 HOH HOH . 
F 6 HOH E 5 505 66 HOH HOH . 
F 6 HOH E 6 506 172 HOH HOH . 
F 6 HOH E 7 507 108 HOH HOH . 
F 6 HOH E 8 508 83 HOH HOH . 
F 6 HOH E 9 509 134 HOH HOH . 
F 6 HOH E 10 510 174 HOH HOH . 
F 6 HOH E 11 511 23 HOH HOH . 
F 6 HOH E 12 512 98 HOH HOH . 
F 6 HOH E 13 513 158 HOH HOH . 
F 6 HOH E 14 514 71 HOH HOH . 
F 6 HOH E 15 515 152 HOH HOH . 
F 6 HOH E 16 516 195 HOH HOH . 
F 6 HOH E 17 517 159 HOH HOH . 
F 6 HOH E 18 518 112 HOH HOH . 
F 6 HOH E 19 519 15 HOH HOH . 
F 6 HOH E 20 520 173 HOH HOH . 
F 6 HOH E 21 521 2 HOH HOH . 
F 6 HOH E 22 522 150 HOH HOH . 
F 6 HOH E 23 523 84 HOH HOH . 
F 6 HOH E 24 524 211 HOH HOH . 
F 6 HOH E 25 525 138 HOH HOH . 
F 6 HOH E 26 526 191 HOH HOH . 
F 6 HOH E 27 527 45 HOH HOH . 
F 6 HOH E 28 528 212 HOH HOH . 
F 6 HOH E 29 529 188 HOH HOH . 
F 6 HOH E 30 530 169 HOH HOH . 
F 6 HOH E 31 531 67 HOH HOH . 
F 6 HOH E 32 532 120 HOH HOH . 
F 6 HOH E 33 533 143 HOH HOH . 
F 6 HOH E 34 534 145 HOH HOH . 
F 6 HOH E 35 535 121 HOH HOH . 
F 6 HOH E 36 536 131 HOH HOH . 
F 6 HOH E 37 537 11 HOH HOH . 
F 6 HOH E 38 538 111 HOH HOH . 
F 6 HOH E 39 539 170 HOH HOH . 
F 6 HOH E 40 540 149 HOH HOH . 
F 6 HOH E 41 541 206 HOH HOH . 
F 6 HOH E 42 542 32 HOH HOH . 
F 6 HOH E 43 543 128 HOH HOH . 
F 6 HOH E 44 544 93 HOH HOH . 
F 6 HOH E 45 545 208 HOH HOH . 
F 6 HOH E 46 546 110 HOH HOH . 
F 6 HOH E 47 547 49 HOH HOH . 
F 6 HOH E 48 548 190 HOH HOH . 
F 6 HOH E 49 549 58 HOH HOH . 
F 6 HOH E 50 550 34 HOH HOH . 
F 6 HOH E 51 551 25 HOH HOH . 
F 6 HOH E 52 552 55 HOH HOH . 
F 6 HOH E 53 553 79 HOH HOH . 
F 6 HOH E 54 554 95 HOH HOH . 
F 6 HOH E 55 555 94 HOH HOH . 
F 6 HOH E 56 556 180 HOH HOH . 
F 6 HOH E 57 557 40 HOH HOH . 
F 6 HOH E 58 558 81 HOH HOH . 
F 6 HOH E 59 559 9 HOH HOH . 
F 6 HOH E 60 560 155 HOH HOH . 
F 6 HOH E 61 561 203 HOH HOH . 
F 6 HOH E 62 562 90 HOH HOH . 
F 6 HOH E 63 563 137 HOH HOH . 
F 6 HOH E 64 564 7 HOH HOH . 
F 6 HOH E 65 565 41 HOH HOH . 
F 6 HOH E 66 566 3 HOH HOH . 
F 6 HOH E 67 567 140 HOH HOH . 
F 6 HOH E 68 568 19 HOH HOH . 
F 6 HOH E 69 569 135 HOH HOH . 
F 6 HOH E 70 570 175 HOH HOH . 
F 6 HOH E 71 571 103 HOH HOH . 
F 6 HOH E 72 572 164 HOH HOH . 
F 6 HOH E 73 573 207 HOH HOH . 
F 6 HOH E 74 574 36 HOH HOH . 
F 6 HOH E 75 575 4 HOH HOH . 
F 6 HOH E 76 576 88 HOH HOH . 
F 6 HOH E 77 577 39 HOH HOH . 
F 6 HOH E 78 578 10 HOH HOH . 
F 6 HOH E 79 579 56 HOH HOH . 
F 6 HOH E 80 580 73 HOH HOH . 
F 6 HOH E 81 581 17 HOH HOH . 
F 6 HOH E 82 582 78 HOH HOH . 
F 6 HOH E 83 583 92 HOH HOH . 
F 6 HOH E 84 584 100 HOH HOH . 
F 6 HOH E 85 585 148 HOH HOH . 
F 6 HOH E 86 586 198 HOH HOH . 
F 6 HOH E 87 587 44 HOH HOH . 
F 6 HOH E 88 588 42 HOH HOH . 
F 6 HOH E 89 589 200 HOH HOH . 
F 6 HOH E 90 590 28 HOH HOH . 
F 6 HOH E 91 591 37 HOH HOH . 
F 6 HOH E 92 592 14 HOH HOH . 
F 6 HOH E 93 593 185 HOH HOH . 
F 6 HOH E 94 594 12 HOH HOH . 
F 6 HOH E 95 595 205 HOH HOH . 
F 6 HOH E 96 596 48 HOH HOH . 
F 6 HOH E 97 597 54 HOH HOH . 
F 6 HOH E 98 598 187 HOH HOH . 
F 6 HOH E 99 599 126 HOH HOH . 
F 6 HOH E 100 600 1 HOH HOH . 
F 6 HOH E 101 601 181 HOH HOH . 
F 6 HOH E 102 602 63 HOH HOH . 
F 6 HOH E 103 603 86 HOH HOH . 
F 6 HOH E 104 604 116 HOH HOH . 
F 6 HOH E 105 605 16 HOH HOH . 
F 6 HOH E 106 606 60 HOH HOH . 
F 6 HOH E 107 607 106 HOH HOH . 
F 6 HOH E 108 608 156 HOH HOH . 
F 6 HOH E 109 609 99 HOH HOH . 
F 6 HOH E 110 610 183 HOH HOH . 
F 6 HOH E 111 611 199 HOH HOH . 
F 6 HOH E 112 612 122 HOH HOH . 
F 6 HOH E 113 613 171 HOH HOH . 
F 6 HOH E 114 614 139 HOH HOH . 
F 6 HOH E 115 615 162 HOH HOH . 
F 6 HOH E 116 616 165 HOH HOH . 
F 6 HOH E 117 617 96 HOH HOH . 
F 6 HOH E 118 618 51 HOH HOH . 
F 6 HOH E 119 619 35 HOH HOH . 
F 6 HOH E 120 620 160 HOH HOH . 
F 6 HOH E 121 621 167 HOH HOH . 
F 6 HOH E 122 622 118 HOH HOH . 
F 6 HOH E 123 623 196 HOH HOH . 
F 6 HOH E 124 624 52 HOH HOH . 
F 6 HOH E 125 625 30 HOH HOH . 
F 6 HOH E 126 626 70 HOH HOH . 
F 6 HOH E 127 627 166 HOH HOH . 
F 6 HOH E 128 628 61 HOH HOH . 
F 6 HOH E 129 629 136 HOH HOH . 
F 6 HOH E 130 630 104 HOH HOH . 
F 6 HOH E 131 631 105 HOH HOH . 
F 6 HOH E 132 632 107 HOH HOH . 
F 6 HOH E 133 633 22 HOH HOH . 
F 6 HOH E 134 634 132 HOH HOH . 
F 6 HOH E 135 635 57 HOH HOH . 
F 6 HOH E 136 636 101 HOH HOH . 
F 6 HOH E 137 637 47 HOH HOH . 
F 6 HOH E 138 638 91 HOH HOH . 
F 6 HOH E 139 639 27 HOH HOH . 
F 6 HOH E 140 640 184 HOH HOH . 
F 6 HOH E 141 641 64 HOH HOH . 
F 6 HOH E 142 642 33 HOH HOH . 
F 6 HOH E 143 643 8 HOH HOH . 
F 6 HOH E 144 644 24 HOH HOH . 
F 6 HOH E 145 645 65 HOH HOH . 
F 6 HOH E 146 646 18 HOH HOH . 
F 6 HOH E 147 647 154 HOH HOH . 
F 6 HOH E 148 648 142 HOH HOH . 
F 6 HOH E 149 649 146 HOH HOH . 
F 6 HOH E 150 650 46 HOH HOH . 
F 6 HOH E 151 651 75 HOH HOH . 
F 6 HOH E 152 652 209 HOH HOH . 
F 6 HOH E 153 653 182 HOH HOH . 
F 6 HOH E 154 654 68 HOH HOH . 
F 6 HOH E 155 655 80 HOH HOH . 
F 6 HOH E 156 656 194 HOH HOH . 
F 6 HOH E 157 657 109 HOH HOH . 
F 6 HOH E 158 658 177 HOH HOH . 
F 6 HOH E 159 659 102 HOH HOH . 
F 6 HOH E 160 660 43 HOH HOH . 
F 6 HOH E 161 661 5 HOH HOH . 
F 6 HOH E 162 662 59 HOH HOH . 
F 6 HOH E 163 663 6 HOH HOH . 
F 6 HOH E 164 664 97 HOH HOH . 
F 6 HOH E 165 665 133 HOH HOH . 
F 6 HOH E 166 666 69 HOH HOH . 
F 6 HOH E 167 667 210 HOH HOH . 
F 6 HOH E 168 668 216 HOH HOH . 
F 6 HOH E 169 669 113 HOH HOH . 
F 6 HOH E 170 670 176 HOH HOH . 
F 6 HOH E 171 671 179 HOH HOH . 
F 6 HOH E 172 672 130 HOH HOH . 
F 6 HOH E 173 673 50 HOH HOH . 
F 6 HOH E 174 674 197 HOH HOH . 
F 6 HOH E 175 675 72 HOH HOH . 
F 6 HOH E 176 676 119 HOH HOH . 
F 6 HOH E 177 677 189 HOH HOH . 
F 6 HOH E 178 678 141 HOH HOH . 
F 6 HOH E 179 679 168 HOH HOH . 
F 6 HOH E 180 680 144 HOH HOH . 
F 6 HOH E 181 681 186 HOH HOH . 
F 6 HOH E 182 682 215 HOH HOH . 
F 6 HOH E 183 683 161 HOH HOH . 
F 6 HOH E 184 684 125 HOH HOH . 
F 6 HOH E 185 685 201 HOH HOH . 
F 6 HOH E 186 686 151 HOH HOH . 
F 6 HOH E 187 687 117 HOH HOH . 
F 6 HOH E 188 688 204 HOH HOH . 
F 6 HOH E 189 689 147 HOH HOH . 
F 6 HOH E 190 690 193 HOH HOH . 
F 6 HOH E 191 691 76 HOH HOH . 
F 6 HOH E 192 692 127 HOH HOH . 
F 6 HOH E 193 693 31 HOH HOH . 
F 6 HOH E 194 694 157 HOH HOH . 
F 6 HOH E 195 695 214 HOH HOH . 
F 6 HOH E 196 696 89 HOH HOH . 
G 6 HOH C 1 3001 20 HOH HOH . 
G 6 HOH C 2 3002 13 HOH HOH . 
G 6 HOH C 3 3003 82 HOH HOH . 
G 6 HOH C 4 3004 26 HOH HOH . 
G 6 HOH C 5 3005 192 HOH HOH . 
G 6 HOH C 6 3006 85 HOH HOH . 
G 6 HOH C 7 3007 38 HOH HOH . 
G 6 HOH C 8 3008 29 HOH HOH . 
G 6 HOH C 9 3009 129 HOH HOH . 
G 6 HOH C 10 3010 21 HOH HOH . 
G 6 HOH C 11 3011 53 HOH HOH . 
G 6 HOH C 12 3012 213 HOH HOH . 
G 6 HOH C 13 3013 77 HOH HOH . 
G 6 HOH C 14 3014 87 HOH HOH . 
G 6 HOH C 15 3015 123 HOH HOH . 
G 6 HOH C 16 3016 114 HOH HOH . 
G 6 HOH C 17 3017 124 HOH HOH . 
G 6 HOH C 18 3018 115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 5 4.669 -12.759 20.813 1 41.44 ? C1 EDO 2901 C 1 
HETATM 2 O O1 EDO . . . E 5 4.661 -11.919 19.674 1 45.72 ? O1 EDO 2901 C 1 
HETATM 3 C C2 EDO . . . E 5 4.443 -14.184 20.417 1 41.91 ? C2 EDO 2901 C 1 
HETATM 4 O O2 EDO . . . E 5 5.378 -14.615 19.426 1 44.47 ? O2 EDO 2901 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#