data_6MMB
#
_model_server_result.job_id            zrRoNLI5mB6AiVIGkPYamA 
_model_server_result.datetime_utc      '2024-11-26 17:19:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mmb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":901}' 
#
_entry.id    6MMB 
#
_exptl.entry_id    6MMB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    34 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MMB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MMB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
? 3 GA N N 
? 3 HA N N 
? 3 IA N N 
? 3 JA N N 
? 3 KA N N 
? 3 LA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 420 A CYS 420 1_555 A SG CYS 454 A CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 436 A CYS 436 1_555 A SG CYS 455 A CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 87 B CYS 87 1_555 B SG CYS 320 B CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 B SG CYS 429 B CYS 429 1_555 B SG CYS 455 B CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 C SG CYS 420 C CYS 420 1_555 C SG CYS 454 C CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 C SG CYS 436 C CYS 436 1_555 C SG CYS 455 C CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 D SG CYS 87 D CYS 87 1_555 D SG CYS 320 D CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 D SG CYS 429 D CYS 429 1_555 D SG CYS 455 D CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf9 D SG CYS 745 D CYS 745 1_555 D SG CYS 800 D CYS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 61 A ASN 61 1_555 E C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 A ND2 ASN 203 A ASN 203 1_555 F C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale3 A ND2 ASN 239 A ASN 239 1_555 G C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale4 A ND2 ASN 276 A ASN 276 1_555 H C1 NAG . A NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale5 A ND2 ASN 300 A ASN 300 1_555 I C1 NAG . A NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale6 A ND2 ASN 350 A ASN 350 1_555 J C1 NAG . A NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale7 A ND2 ASN 368 A ASN 368 1_555 K C1 NAG . A NAG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale8 A ND2 ASN 440 A ASN 440 1_555 L C1 NAG . A NAG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale9 A ND2 ASN 471 A ASN 471 1_555 M C1 NAG . A NAG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? 
covale ? covale10 A ND2 ASN 491 A ASN 491 1_555 N C1 NAG . A NAG 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale11 A ND2 ASN 771 A ASN 771 1_555 O C1 NAG . A NAG 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale12 B ND2 ASN 75 B ASN 75 1_555 P C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale13 B ND2 ASN 340 B ASN 340 1_555 Q C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale14 B ND2 ASN 380 B ASN 380 1_555 R C1 NAG . B NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale15 B ND2 ASN 443 B ASN 443 1_555 S C1 NAG . B NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? 
covale ? covale16 B ND2 ASN 444 B ASN 444 1_555 T C1 NAG . B NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale17 B ND2 ASN 687 B ASN 687 1_555 U C1 NAG . B NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale18 C ND2 ASN 61 C ASN 61 1_555 V C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale19 C ND2 ASN 203 C ASN 203 1_555 W C1 NAG . C NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale20 C ND2 ASN 239 C ASN 239 1_555 X C1 NAG . C NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale21 C ND2 ASN 276 C ASN 276 1_555 Y C1 NAG . C NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale22 C ND2 ASN 300 C ASN 300 1_555 Z C1 NAG . C NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale23 C ND2 ASN 350 C ASN 350 1_555 AA C1 NAG . C NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale24 C ND2 ASN 368 C ASN 368 1_555 BA C1 NAG . C NAG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale25 C ND2 ASN 440 C ASN 440 1_555 CA C1 NAG . C NAG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale26 C ND2 ASN 471 C ASN 471 1_555 DA C1 NAG . C NAG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale27 C ND2 ASN 491 C ASN 491 1_555 EA C1 NAG . C NAG 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale28 C ND2 ASN 771 C ASN 771 1_555 FA C1 NAG . C NAG 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale29 D ND2 ASN 75 D ASN 75 1_555 GA C1 NAG . D NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale30 D ND2 ASN 340 D ASN 340 1_555 HA C1 NAG . D NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale31 D ND2 ASN 380 D ASN 380 1_555 IA C1 NAG . D NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale32 D ND2 ASN 443 D ASN 443 1_555 JA C1 NAG . D NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale33 D ND2 ASN 444 D ASN 444 1_555 KA C1 NAG . D NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale34 D ND2 ASN 687 D ASN 687 1_555 LA C1 NAG . D NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 235 n n 
C1 O1 NAG sing 236 n n 
C1 O5 NAG sing 237 n n 
C1 H1 NAG sing 238 n n 
C2 C3 NAG sing 239 n n 
C2 N2 NAG sing 240 n n 
C2 H2 NAG sing 241 n n 
C3 C4 NAG sing 242 n n 
C3 O3 NAG sing 243 n n 
C3 H3 NAG sing 244 n n 
C4 C5 NAG sing 245 n n 
C4 O4 NAG sing 246 n n 
C4 H4 NAG sing 247 n n 
C5 C6 NAG sing 248 n n 
C5 O5 NAG sing 249 n n 
C5 H5 NAG sing 250 n n 
C6 O6 NAG sing 251 n n 
C6 H61 NAG sing 252 n n 
C6 H62 NAG sing 253 n n 
C7 C8 NAG sing 254 n n 
C7 N2 NAG sing 255 n n 
C7 O7 NAG doub 256 n n 
C8 H81 NAG sing 257 n n 
C8 H82 NAG sing 258 n n 
C8 H83 NAG sing 259 n n 
N2 HN2 NAG sing 260 n n 
O1 HO1 NAG sing 261 n n 
O3 HO3 NAG sing 262 n n 
O4 HO4 NAG sing 263 n n 
O6 HO6 NAG sing 264 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6MMB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG A 1 901 839 NAG NAG . 
F 3 NAG A 1 902 840 NAG NAG . 
G 3 NAG A 1 903 841 NAG NAG . 
H 3 NAG A 1 904 842 NAG NAG . 
I 3 NAG A 1 905 843 NAG NAG . 
J 3 NAG A 1 906 844 NAG NAG . 
K 3 NAG A 1 907 845 NAG NAG . 
L 3 NAG A 1 908 846 NAG NAG . 
M 3 NAG A 1 909 847 NAG NAG . 
N 3 NAG A 1 910 848 NAG NAG . 
O 3 NAG A 1 911 849 NAG NAG . 
P 3 NAG B 1 901 838 NAG NAG . 
Q 3 NAG B 1 902 839 NAG NAG . 
R 3 NAG B 1 903 840 NAG NAG . 
S 3 NAG B 1 904 841 NAG NAG . 
T 3 NAG B 1 905 842 NAG NAG . 
U 3 NAG B 1 906 843 NAG NAG . 
V 3 NAG C 1 901 839 NAG NAG . 
W 3 NAG C 1 902 840 NAG NAG . 
X 3 NAG C 1 903 841 NAG NAG . 
Y 3 NAG C 1 904 842 NAG NAG . 
Z 3 NAG C 1 905 843 NAG NAG . 
AA 3 NAG C 1 906 844 NAG NAG . 
BA 3 NAG C 1 907 845 NAG NAG . 
CA 3 NAG C 1 908 846 NAG NAG . 
DA 3 NAG C 1 909 847 NAG NAG . 
EA 3 NAG C 1 910 848 NAG NAG . 
FA 3 NAG C 1 911 849 NAG NAG . 
GA 3 NAG D 1 901 838 NAG NAG . 
HA 3 NAG D 1 902 839 NAG NAG . 
IA 3 NAG D 1 903 840 NAG NAG . 
JA 3 NAG D 1 904 841 NAG NAG . 
KA 3 NAG D 1 905 842 NAG NAG . 
LA 3 NAG D 1 906 843 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . V 3 221.326 121.049 70.639 1 999.99 ? C1 NAG 901 C 1 
HETATM 2 C C2 NAG . . . V 3 221.842 121.181 69.202 1 999.99 ? C2 NAG 901 C 1 
HETATM 3 C C3 NAG . . . V 3 222.314 119.833 68.666 1 999.99 ? C3 NAG 901 C 1 
HETATM 4 C C4 NAG . . . V 3 223.308 119.173 69.617 1 999.99 ? C4 NAG 901 C 1 
HETATM 5 C C5 NAG . . . V 3 222.705 119.083 71.016 1 999.99 ? C5 NAG 901 C 1 
HETATM 6 C C6 NAG . . . V 3 223.708 118.503 72.005 1 999.99 ? C6 NAG 901 C 1 
HETATM 7 C C7 NAG . . . V 3 220.731 123.016 68.055 1 999.99 ? C7 NAG 901 C 1 
HETATM 8 C C8 NAG . . . V 3 219.532 123.434 67.256 1 999.99 ? C8 NAG 901 C 1 
HETATM 9 N N2 NAG . . . V 3 220.809 121.718 68.335 1 999.99 ? N2 NAG 901 C 1 
HETATM 10 O O3 NAG . . . V 3 222.93 120.018 67.386 1 999.99 ? O3 NAG 901 C 1 
HETATM 11 O O4 NAG . . . V 3 223.627 117.86 69.146 1 999.99 ? O4 NAG 901 C 1 
HETATM 12 O O5 NAG . . . V 3 222.294 120.381 71.464 1 999.99 ? O5 NAG 901 C 1 
HETATM 13 O O6 NAG . . . V 3 224.792 119.422 72.181 1 999.99 ? O6 NAG 901 C 1 
HETATM 14 O O7 NAG . . . V 3 221.578 123.814 68.422 1 999.99 ? O7 NAG 901 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#