data_6MMB # _model_server_result.job_id vKZsi7enVuc-KGxSGfSu6Q _model_server_result.datetime_utc '2024-11-05 14:38:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mmb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":906}' # _entry.id 6MMB # _exptl.entry_id 6MMB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 34 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MMB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MMB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 FA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N ? 3 JA N N ? 3 KA N N ? 3 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 420 A CYS 420 1_555 A SG CYS 454 A CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 436 A CYS 436 1_555 A SG CYS 455 A CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 87 B CYS 87 1_555 B SG CYS 320 B CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 429 B CYS 429 1_555 B SG CYS 455 B CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 420 C CYS 420 1_555 C SG CYS 454 C CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 C SG CYS 436 C CYS 436 1_555 C SG CYS 455 C CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 D SG CYS 87 D CYS 87 1_555 D SG CYS 320 D CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 D SG CYS 429 D CYS 429 1_555 D SG CYS 455 D CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 D SG CYS 745 D CYS 745 1_555 D SG CYS 800 D CYS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 61 A ASN 61 1_555 E C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 203 A ASN 203 1_555 F C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 239 A ASN 239 1_555 G C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 276 A ASN 276 1_555 H C1 NAG . A NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 A ND2 ASN 300 A ASN 300 1_555 I C1 NAG . A NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 A ND2 ASN 350 A ASN 350 1_555 J C1 NAG . A NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 A ND2 ASN 368 A ASN 368 1_555 K C1 NAG . A NAG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 A ND2 ASN 440 A ASN 440 1_555 L C1 NAG . A NAG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 A ND2 ASN 471 A ASN 471 1_555 M C1 NAG . A NAG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale10 A ND2 ASN 491 A ASN 491 1_555 N C1 NAG . A NAG 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 A ND2 ASN 771 A ASN 771 1_555 O C1 NAG . A NAG 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale12 B ND2 ASN 75 B ASN 75 1_555 P C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale13 B ND2 ASN 340 B ASN 340 1_555 Q C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale14 B ND2 ASN 380 B ASN 380 1_555 R C1 NAG . B NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale15 B ND2 ASN 443 B ASN 443 1_555 S C1 NAG . B NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale16 B ND2 ASN 444 B ASN 444 1_555 T C1 NAG . B NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale17 B ND2 ASN 687 B ASN 687 1_555 U C1 NAG . B NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale18 C ND2 ASN 61 C ASN 61 1_555 V C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale19 C ND2 ASN 203 C ASN 203 1_555 W C1 NAG . C NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale20 C ND2 ASN 239 C ASN 239 1_555 X C1 NAG . C NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale21 C ND2 ASN 276 C ASN 276 1_555 Y C1 NAG . C NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale22 C ND2 ASN 300 C ASN 300 1_555 Z C1 NAG . C NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale23 C ND2 ASN 350 C ASN 350 1_555 AA C1 NAG . C NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale24 C ND2 ASN 368 C ASN 368 1_555 BA C1 NAG . C NAG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale25 C ND2 ASN 440 C ASN 440 1_555 CA C1 NAG . C NAG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale26 C ND2 ASN 471 C ASN 471 1_555 DA C1 NAG . C NAG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale27 C ND2 ASN 491 C ASN 491 1_555 EA C1 NAG . C NAG 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale28 C ND2 ASN 771 C ASN 771 1_555 FA C1 NAG . C NAG 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale29 D ND2 ASN 75 D ASN 75 1_555 GA C1 NAG . D NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale30 D ND2 ASN 340 D ASN 340 1_555 HA C1 NAG . D NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale31 D ND2 ASN 380 D ASN 380 1_555 IA C1 NAG . D NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale32 D ND2 ASN 443 D ASN 443 1_555 JA C1 NAG . D NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale33 D ND2 ASN 444 D ASN 444 1_555 KA C1 NAG . D NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale34 D ND2 ASN 687 D ASN 687 1_555 LA C1 NAG . D NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6MMB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 901 839 NAG NAG . F 3 NAG A 1 902 840 NAG NAG . G 3 NAG A 1 903 841 NAG NAG . H 3 NAG A 1 904 842 NAG NAG . I 3 NAG A 1 905 843 NAG NAG . J 3 NAG A 1 906 844 NAG NAG . K 3 NAG A 1 907 845 NAG NAG . L 3 NAG A 1 908 846 NAG NAG . M 3 NAG A 1 909 847 NAG NAG . N 3 NAG A 1 910 848 NAG NAG . O 3 NAG A 1 911 849 NAG NAG . P 3 NAG B 1 901 838 NAG NAG . Q 3 NAG B 1 902 839 NAG NAG . R 3 NAG B 1 903 840 NAG NAG . S 3 NAG B 1 904 841 NAG NAG . T 3 NAG B 1 905 842 NAG NAG . U 3 NAG B 1 906 843 NAG NAG . V 3 NAG C 1 901 839 NAG NAG . W 3 NAG C 1 902 840 NAG NAG . X 3 NAG C 1 903 841 NAG NAG . Y 3 NAG C 1 904 842 NAG NAG . Z 3 NAG C 1 905 843 NAG NAG . AA 3 NAG C 1 906 844 NAG NAG . BA 3 NAG C 1 907 845 NAG NAG . CA 3 NAG C 1 908 846 NAG NAG . DA 3 NAG C 1 909 847 NAG NAG . EA 3 NAG C 1 910 848 NAG NAG . FA 3 NAG C 1 911 849 NAG NAG . GA 3 NAG D 1 901 838 NAG NAG . HA 3 NAG D 1 902 839 NAG NAG . IA 3 NAG D 1 903 840 NAG NAG . JA 3 NAG D 1 904 841 NAG NAG . KA 3 NAG D 1 905 842 NAG NAG . LA 3 NAG D 1 906 843 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . LA 3 188.369 186.79 135.907 1 999.99 ? C1 NAG 906 D 1 HETATM 2 C C2 NAG . . . LA 3 188.012 187.661 137.118 1 999.99 ? C2 NAG 906 D 1 HETATM 3 C C3 NAG . . . LA 3 187.896 189.137 136.732 1 999.99 ? C3 NAG 906 D 1 HETATM 4 C C4 NAG . . . LA 3 189.123 189.608 135.959 1 999.99 ? C4 NAG 906 D 1 HETATM 5 C C5 NAG . . . LA 3 189.376 188.687 134.768 1 999.99 ? C5 NAG 906 D 1 HETATM 6 C C6 NAG . . . LA 3 190.641 189.097 134.025 1 999.99 ? C6 NAG 906 D 1 HETATM 7 C C7 NAG . . . LA 3 185.563 187.518 137.413 1 999.99 ? C7 NAG 906 D 1 HETATM 8 C C8 NAG . . . LA 3 184.728 188.15 138.488 1 999.99 ? C8 NAG 906 D 1 HETATM 9 N N2 NAG . . . LA 3 186.803 187.182 137.774 1 999.99 ? N2 NAG 906 D 1 HETATM 10 O O3 NAG . . . LA 3 187.746 189.93 137.914 1 999.99 ? O3 NAG 906 D 1 HETATM 11 O O4 NAG . . . LA 3 188.916 190.946 135.496 1 999.99 ? O4 NAG 906 D 1 HETATM 12 O O5 NAG . . . LA 3 189.504 187.329 135.21 1 999.99 ? O5 NAG 906 D 1 HETATM 13 O O6 NAG . . . LA 3 190.775 188.307 132.838 1 999.99 ? O6 NAG 906 D 1 HETATM 14 O O7 NAG . . . LA 3 185.117 187.318 136.294 1 999.99 ? O7 NAG 906 D 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 381 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #