data_6MMX # _model_server_result.job_id f_2GFRH01wh11nKBWO5GpA _model_server_result.datetime_utc '2024-11-20 04:20:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mmx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":904}' # _entry.id 6MMX # _exptl.entry_id 6MMX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 25 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MMX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 Z N N ? 4 AA N N ? 4 BA N N ? 4 CA N N ? 4 DA N N ? 4 EA N N ? 4 FA N N ? 4 GA N N ? 4 HA N N ? 4 IA N N ? 4 JA N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 839 NAG 3 n E NAG 2 E 2 NAG A 840 NAG 3 n F NAG 1 F 1 NAG A 845 NAG 3 n F NAG 2 F 2 NAG A 846 NAG 3 n G NAG 1 G 1 NAG A 847 NAG 3 n G NAG 2 G 2 NAG A 848 NAG 3 n H NAG 1 H 1 NAG A 849 NAG 3 n H NAG 2 H 2 NAG A 850 NAG 3 n I NAG 1 I 1 NAG B 840 NAG 3 n I NAG 2 I 2 NAG B 841 NAG 3 n J NAG 1 J 1 NAG C 840 NAG 3 n J NAG 2 J 2 NAG C 841 NAG 3 n K NAG 1 K 1 NAG C 846 NAG 3 n K NAG 2 K 2 NAG C 847 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 420 A CYS 420 1_555 A SG CYS 454 A CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 436 A CYS 436 1_555 A SG CYS 455 A CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 87 B CYS 87 1_555 B SG CYS 320 B CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 429 B CYS 429 1_555 B SG CYS 455 B CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 C SG CYS 420 C CYS 420 1_555 C SG CYS 454 C CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 436 C CYS 436 1_555 C SG CYS 455 C CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 D SG CYS 87 D CYS 87 1_555 D SG CYS 320 D CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 D SG CYS 429 D CYS 429 1_555 D SG CYS 455 D CYS 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 61 A ASN 61 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 A ND2 ASN 203 A ASN 203 1_555 L C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 A ND2 ASN 239 A ASN 239 1_555 M C1 NAG . A NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 A ND2 ASN 276 A ASN 276 1_555 N C1 NAG . A NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 A ND2 ASN 300 A ASN 300 1_555 O C1 NAG . A NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 A ND2 ASN 350 A ASN 350 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 A ND2 ASN 368 A ASN 368 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale8 A ND2 ASN 440 A ASN 440 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale9 A ND2 ASN 471 A ASN 471 1_555 P C1 NAG . A NAG 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale10 A ND2 ASN 491 A ASN 491 1_555 Q C1 NAG . A NAG 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 A ND2 ASN 771 A ASN 771 1_555 R C1 NAG . A NAG 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale12 B ND2 ASN 75 B ASN 75 1_555 S C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale13 B ND2 ASN 340 B ASN 340 1_555 T C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale14 B ND2 ASN 380 B ASN 380 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale15 B ND2 ASN 443 B ASN 443 1_555 U C1 NAG . B NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale16 B ND2 ASN 444 B ASN 444 1_555 V C1 NAG . B NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale17 C ND2 ASN 61 C ASN 61 1_555 W C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale18 C ND2 ASN 203 C ASN 203 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale19 C ND2 ASN 239 C ASN 239 1_555 X C1 NAG . C NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale20 C ND2 ASN 276 C ASN 276 1_555 Y C1 NAG . C NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale21 C ND2 ASN 300 C ASN 300 1_555 Z C1 NAG . C NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale22 C ND2 ASN 350 C ASN 350 1_555 AA C1 NAG . C NAG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale23 C ND2 ASN 368 C ASN 368 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale24 C ND2 ASN 440 C ASN 440 1_555 BA C1 NAG . C NAG 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale25 C ND2 ASN 471 C ASN 471 1_555 CA C1 NAG . C NAG 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale26 C ND2 ASN 491 C ASN 491 1_555 DA C1 NAG . C NAG 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale27 C ND2 ASN 771 C ASN 771 1_555 EA C1 NAG . C NAG 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale28 D ND2 ASN 75 D ASN 75 1_555 FA C1 NAG . D NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale29 D ND2 ASN 340 D ASN 340 1_555 GA C1 NAG . D NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale30 D ND2 ASN 380 D ASN 380 1_555 HA C1 NAG . D NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale31 D ND2 ASN 443 D ASN 443 1_555 IA C1 NAG . D NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale32 D ND2 ASN 444 D ASN 444 1_555 JA C1 NAG . D NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale33 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale34 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale35 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale36 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale37 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale38 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale39 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6MMX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 4 NAG A 1 903 841 NAG NAG . M 4 NAG A 1 904 842 NAG NAG . N 4 NAG A 1 905 843 NAG NAG . O 4 NAG A 1 906 844 NAG NAG . P 4 NAG A 1 913 851 NAG NAG . Q 4 NAG A 1 914 852 NAG NAG . R 4 NAG A 1 915 853 NAG NAG . S 4 NAG B 1 901 838 NAG NAG . T 4 NAG B 1 902 839 NAG NAG . U 4 NAG B 1 905 842 NAG NAG . V 4 NAG B 1 906 843 NAG NAG . W 4 NAG C 1 901 839 NAG NAG . X 4 NAG C 1 904 842 NAG NAG . Y 4 NAG C 1 905 843 NAG NAG . Z 4 NAG C 1 906 844 NAG NAG . AA 4 NAG C 1 907 845 NAG NAG . BA 4 NAG C 1 910 848 NAG NAG . CA 4 NAG C 1 911 849 NAG NAG . DA 4 NAG C 1 912 850 NAG NAG . EA 4 NAG C 1 913 851 NAG NAG . FA 4 NAG D 1 901 838 NAG NAG . GA 4 NAG D 1 902 839 NAG NAG . HA 4 NAG D 1 903 840 NAG NAG . IA 4 NAG D 1 904 841 NAG NAG . JA 4 NAG D 1 905 842 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . IA 4 194.282 168.584 116.217 1 503.32 ? C1 NAG 904 D 1 HETATM 2 C C2 NAG . . . IA 4 194.903 169.37 117.374 1 503.32 ? C2 NAG 904 D 1 HETATM 3 C C3 NAG . . . IA 4 194.887 170.866 117.079 1 503.32 ? C3 NAG 904 D 1 HETATM 4 C C4 NAG . . . IA 4 195.525 171.168 115.727 1 503.32 ? C4 NAG 904 D 1 HETATM 5 C C5 NAG . . . IA 4 194.881 170.321 114.632 1 503.32 ? C5 NAG 904 D 1 HETATM 6 C C6 NAG . . . IA 4 195.592 170.534 113.301 1 503.32 ? C6 NAG 904 D 1 HETATM 7 C C7 NAG . . . IA 4 194.75 168.414 119.595 1 503.32 ? C7 NAG 904 D 1 HETATM 8 C C8 NAG . . . IA 4 195.311 169.236 120.717 1 503.32 ? C8 NAG 904 D 1 HETATM 9 N N2 NAG . . . IA 4 194.19 169.103 118.607 1 503.32 ? N2 NAG 904 D 1 HETATM 10 O O3 NAG . . . IA 4 195.594 171.557 118.116 1 503.32 ? O3 NAG 904 D 1 HETATM 11 O O4 NAG . . . IA 4 195.364 172.556 115.414 1 503.32 ? O4 NAG 904 D 1 HETATM 12 O O5 NAG . . . IA 4 194.927 168.93 114.982 1 503.32 ? O5 NAG 904 D 1 HETATM 13 O O6 NAG . . . IA 4 196.965 170.145 113.423 1 503.32 ? O6 NAG 904 D 1 HETATM 14 O O7 NAG . . . IA 4 194.806 167.195 119.59 1 503.32 ? O7 NAG 904 D 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #