data_6MN8 # _model_server_result.job_id Apsjn7dBhRZl_lI3RKGoXg _model_server_result.datetime_utc '2025-01-10 15:01:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mn8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 6MN8 # _exptl.entry_id 6MN8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6MN8 _cell.length_a 159.72 _cell.length_b 159.72 _cell.length_c 143.72 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MN8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_445 x-y-1/3,-y-2/3,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 -92.214385 47.906667 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O VAL 127 A VAL 172 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc2 A O SER 248 A SER 293 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc3 B MG MG . A MG 601 1_555 M O HOH . A HOH 737 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc4 B MG MG . A MG 601 1_555 M O HOH . A HOH 747 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc5 B MG MG . A MG 601 1_555 M O HOH . A HOH 782 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc6 B MG MG . A MG 601 1_555 M O HOH . A HOH 839 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc7 C MG MG . A MG 602 1_555 E O3G ANP . A ANP 604 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.079 ? metalc ? metalc8 C MG MG . A MG 602 1_555 E O2B ANP . A ANP 604 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.002 ? metalc ? metalc9 C MG MG . A MG 602 1_555 G O2 2PN . A 2PN 606 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.087 ? metalc ? metalc10 C MG MG . A MG 602 1_555 M O HOH . A HOH 703 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.162 ? metalc ? metalc11 C MG MG . A MG 602 1_555 M O HOH . A HOH 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc12 C MG MG . A MG 602 1_555 M O HOH . A HOH 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc13 C MG MG . A MG 602 1_555 M O HOH . A HOH 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc14 C MG MG . A MG 602 1_555 M O HOH . A HOH 768 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 26 n n P O2P AMP sing 27 n n P O3P AMP sing 28 n n P O5' AMP sing 29 n n O2P HOP2 AMP sing 30 n n O3P HOP3 AMP sing 31 n n O5' C5' AMP sing 32 n n C5' C4' AMP sing 33 n n C5' "H5'1" AMP sing 34 n n C5' "H5'2" AMP sing 35 n n C4' O4' AMP sing 36 n n C4' C3' AMP sing 37 n n C4' H4' AMP sing 38 n n O4' C1' AMP sing 39 n n C3' O3' AMP sing 40 n n C3' C2' AMP sing 41 n n C3' H3' AMP sing 42 n n O3' HO3' AMP sing 43 n n C2' O2' AMP sing 44 n n C2' C1' AMP sing 45 n n C2' H2' AMP sing 46 n n O2' HO2' AMP sing 47 n n C1' N9 AMP sing 48 n n C1' H1' AMP sing 49 n n N9 C8 AMP sing 50 n y N9 C4 AMP sing 51 n y C8 N7 AMP doub 52 n y C8 H8 AMP sing 53 n n N7 C5 AMP sing 54 n y C5 C6 AMP sing 55 n y C5 C4 AMP doub 56 n y C6 N6 AMP sing 57 n n C6 N1 AMP doub 58 n y N6 HN61 AMP sing 59 n n N6 HN62 AMP sing 60 n n N1 C2 AMP sing 61 n y C2 N3 AMP doub 62 n y C2 H2 AMP sing 63 n n N3 C4 AMP sing 64 n y # _atom_sites.entry_id 6MN8 _atom_sites.fract_transf_matrix[1][1] 0.006261 _atom_sites.fract_transf_matrix[1][2] 0.003615 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 800 MG MG . C 2 MG A 1 602 801 MG MG . D 3 HFG A 1 603 802 HFG HFG . E 4 ANP A 1 604 803 ANP ANP . F 5 AMP A 1 605 804 AMP AMP . G 6 2PN A 1 606 805 2PN 2PN . H 7 GLY A 1 607 1101 GLY GLY . I 7 GLY A 1 608 1102 GLY GLY . J 7 GLY A 1 609 1103 GLY GLY . K 8 SER A 1 610 1401 SER SER . L 8 SER A 1 611 1402 SER SER . M 9 HOH A 1 701 171 HOH HOH . M 9 HOH A 2 702 166 HOH HOH . M 9 HOH A 3 703 165 HOH HOH . M 9 HOH A 4 704 77 HOH HOH . M 9 HOH A 5 705 13 HOH HOH . M 9 HOH A 6 706 107 HOH HOH . M 9 HOH A 7 707 125 HOH HOH . M 9 HOH A 8 708 6 HOH HOH . M 9 HOH A 9 709 158 HOH HOH . M 9 HOH A 10 710 44 HOH HOH . M 9 HOH A 11 711 48 HOH HOH . M 9 HOH A 12 712 67 HOH HOH . M 9 HOH A 13 713 71 HOH HOH . M 9 HOH A 14 714 15 HOH HOH . M 9 HOH A 15 715 119 HOH HOH . M 9 HOH A 16 716 89 HOH HOH . M 9 HOH A 17 717 10 HOH HOH . M 9 HOH A 18 718 45 HOH HOH . M 9 HOH A 19 719 92 HOH HOH . M 9 HOH A 20 720 161 HOH HOH . M 9 HOH A 21 721 18 HOH HOH . M 9 HOH A 22 722 99 HOH HOH . M 9 HOH A 23 723 127 HOH HOH . M 9 HOH A 24 724 147 HOH HOH . M 9 HOH A 25 725 167 HOH HOH . M 9 HOH A 26 726 28 HOH HOH . M 9 HOH A 27 727 153 HOH HOH . M 9 HOH A 28 728 41 HOH HOH . M 9 HOH A 29 729 7 HOH HOH . M 9 HOH A 30 730 112 HOH HOH . M 9 HOH A 31 731 169 HOH HOH . M 9 HOH A 32 732 20 HOH HOH . M 9 HOH A 33 733 22 HOH HOH . M 9 HOH A 34 734 14 HOH HOH . M 9 HOH A 35 735 76 HOH HOH . M 9 HOH A 36 736 80 HOH HOH . M 9 HOH A 37 737 117 HOH HOH . M 9 HOH A 38 738 39 HOH HOH . M 9 HOH A 39 739 32 HOH HOH . M 9 HOH A 40 740 57 HOH HOH . M 9 HOH A 41 741 94 HOH HOH . M 9 HOH A 42 742 53 HOH HOH . M 9 HOH A 43 743 88 HOH HOH . M 9 HOH A 44 744 49 HOH HOH . M 9 HOH A 45 745 135 HOH HOH . M 9 HOH A 46 746 151 HOH HOH . M 9 HOH A 47 747 118 HOH HOH . M 9 HOH A 48 748 150 HOH HOH . M 9 HOH A 49 749 37 HOH HOH . M 9 HOH A 50 750 168 HOH HOH . M 9 HOH A 51 751 17 HOH HOH . M 9 HOH A 52 752 55 HOH HOH . M 9 HOH A 53 753 61 HOH HOH . M 9 HOH A 54 754 33 HOH HOH . M 9 HOH A 55 755 19 HOH HOH . M 9 HOH A 56 756 11 HOH HOH . M 9 HOH A 57 757 9 HOH HOH . M 9 HOH A 58 758 3 HOH HOH . M 9 HOH A 59 759 25 HOH HOH . M 9 HOH A 60 760 1 HOH HOH . M 9 HOH A 61 761 43 HOH HOH . M 9 HOH A 62 762 34 HOH HOH . M 9 HOH A 63 763 23 HOH HOH . M 9 HOH A 64 764 2 HOH HOH . M 9 HOH A 65 765 69 HOH HOH . M 9 HOH A 66 766 145 HOH HOH . M 9 HOH A 67 767 95 HOH HOH . M 9 HOH A 68 768 170 HOH HOH . M 9 HOH A 69 769 79 HOH HOH . M 9 HOH A 70 770 81 HOH HOH . M 9 HOH A 71 771 29 HOH HOH . M 9 HOH A 72 772 103 HOH HOH . M 9 HOH A 73 773 65 HOH HOH . M 9 HOH A 74 774 4 HOH HOH . M 9 HOH A 75 775 31 HOH HOH . M 9 HOH A 76 776 78 HOH HOH . M 9 HOH A 77 777 40 HOH HOH . M 9 HOH A 78 778 16 HOH HOH . M 9 HOH A 79 779 157 HOH HOH . M 9 HOH A 80 780 111 HOH HOH . M 9 HOH A 81 781 21 HOH HOH . M 9 HOH A 82 782 64 HOH HOH . M 9 HOH A 83 783 164 HOH HOH . M 9 HOH A 84 784 87 HOH HOH . M 9 HOH A 85 785 126 HOH HOH . M 9 HOH A 86 786 24 HOH HOH . M 9 HOH A 87 787 38 HOH HOH . M 9 HOH A 88 788 5 HOH HOH . M 9 HOH A 89 789 52 HOH HOH . M 9 HOH A 90 790 68 HOH HOH . M 9 HOH A 91 791 59 HOH HOH . M 9 HOH A 92 792 110 HOH HOH . M 9 HOH A 93 793 73 HOH HOH . M 9 HOH A 94 794 12 HOH HOH . M 9 HOH A 95 795 154 HOH HOH . M 9 HOH A 96 796 27 HOH HOH . M 9 HOH A 97 797 133 HOH HOH . M 9 HOH A 98 798 123 HOH HOH . M 9 HOH A 99 799 98 HOH HOH . M 9 HOH A 100 800 50 HOH HOH . M 9 HOH A 101 801 8 HOH HOH . M 9 HOH A 102 802 152 HOH HOH . M 9 HOH A 103 803 137 HOH HOH . M 9 HOH A 104 804 54 HOH HOH . M 9 HOH A 105 805 160 HOH HOH . M 9 HOH A 106 806 26 HOH HOH . M 9 HOH A 107 807 149 HOH HOH . M 9 HOH A 108 808 91 HOH HOH . M 9 HOH A 109 809 138 HOH HOH . M 9 HOH A 110 810 74 HOH HOH . M 9 HOH A 111 811 143 HOH HOH . M 9 HOH A 112 812 159 HOH HOH . M 9 HOH A 113 813 56 HOH HOH . M 9 HOH A 114 814 144 HOH HOH . M 9 HOH A 115 815 129 HOH HOH . M 9 HOH A 116 816 85 HOH HOH . M 9 HOH A 117 817 51 HOH HOH . M 9 HOH A 118 818 66 HOH HOH . M 9 HOH A 119 819 60 HOH HOH . M 9 HOH A 120 820 97 HOH HOH . M 9 HOH A 121 821 156 HOH HOH . M 9 HOH A 122 822 90 HOH HOH . M 9 HOH A 123 823 46 HOH HOH . M 9 HOH A 124 824 47 HOH HOH . M 9 HOH A 125 825 58 HOH HOH . M 9 HOH A 126 826 155 HOH HOH . M 9 HOH A 127 827 70 HOH HOH . M 9 HOH A 128 828 146 HOH HOH . M 9 HOH A 129 829 148 HOH HOH . M 9 HOH A 130 830 72 HOH HOH . M 9 HOH A 131 831 36 HOH HOH . M 9 HOH A 132 832 101 HOH HOH . M 9 HOH A 133 833 139 HOH HOH . M 9 HOH A 134 834 128 HOH HOH . M 9 HOH A 135 835 104 HOH HOH . M 9 HOH A 136 836 84 HOH HOH . M 9 HOH A 137 837 35 HOH HOH . M 9 HOH A 138 838 141 HOH HOH . M 9 HOH A 139 839 163 HOH HOH . M 9 HOH A 140 840 113 HOH HOH . M 9 HOH A 141 841 142 HOH HOH . M 9 HOH A 142 842 162 HOH HOH . M 9 HOH A 143 843 63 HOH HOH . M 9 HOH A 144 844 100 HOH HOH . M 9 HOH A 145 845 116 HOH HOH . M 9 HOH A 146 846 108 HOH HOH . M 9 HOH A 147 847 86 HOH HOH . M 9 HOH A 148 848 131 HOH HOH . M 9 HOH A 149 849 96 HOH HOH . M 9 HOH A 150 850 140 HOH HOH . M 9 HOH A 151 851 106 HOH HOH . M 9 HOH A 152 852 115 HOH HOH . M 9 HOH A 153 853 114 HOH HOH . M 9 HOH A 154 854 105 HOH HOH . M 9 HOH A 155 855 120 HOH HOH . M 9 HOH A 156 856 122 HOH HOH . M 9 HOH A 157 857 124 HOH HOH . M 9 HOH A 158 858 75 HOH HOH . M 9 HOH A 159 859 130 HOH HOH . M 9 HOH A 160 860 62 HOH HOH . M 9 HOH A 161 861 132 HOH HOH . M 9 HOH A 162 862 30 HOH HOH . M 9 HOH A 163 863 109 HOH HOH . M 9 HOH A 164 864 136 HOH HOH . M 9 HOH A 165 865 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . A . F 5 -37.132 -31.789 14.436 0.49 34.09 ? P AMP 605 A 1 HETATM 2 O O1P AMP . A . F 5 -37.899 -31.537 13.199 0.49 33.9 ? O1P AMP 605 A 1 HETATM 3 O O2P AMP . A . F 5 -36.613 -30.565 15.247 0.49 32 ? O2P AMP 605 A 1 HETATM 4 O O3P AMP . A . F 5 -35.913 -32.686 14.198 0.49 29.85 ? O3P AMP 605 A 1 HETATM 5 O O5' AMP . A . F 5 -38.072 -32.613 15.431 0.49 35 ? O5' AMP 605 A 1 HETATM 6 C C5' AMP . A . F 5 -39.485 -32.494 15.392 0.49 32.26 ? C5' AMP 605 A 1 HETATM 7 C C4' AMP . A . F 5 -40.008 -31.709 16.569 0.49 33.68 ? C4' AMP 605 A 1 HETATM 8 O O4' AMP . A . F 5 -39.517 -32.282 17.808 0.49 33.5 ? O4' AMP 605 A 1 HETATM 9 C C3' AMP . A . F 5 -39.573 -30.254 16.631 0.49 35.76 ? C3' AMP 605 A 1 HETATM 10 O O3' AMP . A . F 5 -40.369 -29.419 15.813 0.49 36.18 ? O3' AMP 605 A 1 HETATM 11 C C2' AMP . A . F 5 -39.67 -29.919 18.119 0.49 33.67 ? C2' AMP 605 A 1 HETATM 12 O O2' AMP . A . F 5 -40.99 -29.531 18.47 0.49 32.32 ? O2' AMP 605 A 1 HETATM 13 C C1' AMP . A . F 5 -39.359 -31.271 18.778 0.49 32.25 ? C1' AMP 605 A 1 HETATM 14 N N9 AMP . A . F 5 -37.988 -31.331 19.318 0.49 32.27 ? N9 AMP 605 A 1 HETATM 15 C C8 AMP . A . F 5 -36.812 -31.211 18.624 0.49 32.3 ? C8 AMP 605 A 1 HETATM 16 N N7 AMP . A . F 5 -35.738 -31.281 19.372 0.49 33.25 ? N7 AMP 605 A 1 HETATM 17 C C5 AMP . A . F 5 -36.24 -31.468 20.652 0.49 32.57 ? C5 AMP 605 A 1 HETATM 18 C C6 AMP . A . F 5 -35.615 -31.638 21.903 0.49 31.15 ? C6 AMP 605 A 1 HETATM 19 N N6 AMP . A . F 5 -34.29 -31.707 22.071 0.49 31.12 ? N6 AMP 605 A 1 HETATM 20 N N1 AMP . A . F 5 -36.409 -31.792 22.987 0.49 32.62 ? N1 AMP 605 A 1 HETATM 21 C C2 AMP . A . F 5 -37.737 -31.794 22.817 0.49 32.02 ? C2 AMP 605 A 1 HETATM 22 N N3 AMP . A . F 5 -38.439 -31.661 21.687 0.49 31.63 ? N3 AMP 605 A 1 HETATM 23 C C4 AMP . A . F 5 -37.628 -31.498 20.634 0.49 33.25 ? C4 AMP 605 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #