data_6MNE # _model_server_result.job_id k5lXigoh9sHbEWRe1M-7_Q _model_server_result.datetime_utc '2024-11-21 17:07:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6MNE # _exptl.entry_id 6MNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MNE _cell.length_a 43.78 _cell.length_b 108.24 _cell.length_c 117.67 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 295 n n PA O2A NAP sing 296 n n PA O5B NAP sing 297 n n PA O3 NAP sing 298 n n O2A HOA2 NAP sing 299 n n O5B C5B NAP sing 300 n n C5B C4B NAP sing 301 n n C5B H51A NAP sing 302 n n C5B H52A NAP sing 303 n n C4B O4B NAP sing 304 n n C4B C3B NAP sing 305 n n C4B H4B NAP sing 306 n n O4B C1B NAP sing 307 n n C3B O3B NAP sing 308 n n C3B C2B NAP sing 309 n n C3B H3B NAP sing 310 n n O3B HO3A NAP sing 311 n n C2B O2B NAP sing 312 n n C2B C1B NAP sing 313 n n C2B H2B NAP sing 314 n n O2B P2B NAP sing 315 n n C1B N9A NAP sing 316 n n C1B H1B NAP sing 317 n n N9A C8A NAP sing 318 n y N9A C4A NAP sing 319 n y C8A N7A NAP doub 320 n y C8A H8A NAP sing 321 n n N7A C5A NAP sing 322 n y C5A C6A NAP sing 323 n y C5A C4A NAP doub 324 n y C6A N6A NAP sing 325 n n C6A N1A NAP doub 326 n y N6A H61A NAP sing 327 n n N6A H62A NAP sing 328 n n N1A C2A NAP sing 329 n y C2A N3A NAP doub 330 n y C2A H2A NAP sing 331 n n N3A C4A NAP sing 332 n y O3 PN NAP sing 333 n n PN O1N NAP doub 334 n n PN O2N NAP sing 335 n n PN O5D NAP sing 336 n n O5D C5D NAP sing 337 n n C5D C4D NAP sing 338 n n C5D H51N NAP sing 339 n n C5D H52N NAP sing 340 n n C4D O4D NAP sing 341 n n C4D C3D NAP sing 342 n n C4D H4D NAP sing 343 n n O4D C1D NAP sing 344 n n C3D O3D NAP sing 345 n n C3D C2D NAP sing 346 n n C3D H3D NAP sing 347 n n O3D HO3N NAP sing 348 n n C2D O2D NAP sing 349 n n C2D C1D NAP sing 350 n n C2D H2D NAP sing 351 n n O2D HO2N NAP sing 352 n n C1D N1N NAP sing 353 n n C1D H1D NAP sing 354 n n N1N C2N NAP sing 355 n y N1N C6N NAP doub 356 n y C2N C3N NAP doub 357 n y C2N H2N NAP sing 358 n n C3N C7N NAP sing 359 n n C3N C4N NAP sing 360 n y C7N O7N NAP doub 361 n n C7N N7N NAP sing 362 n n N7N H71N NAP sing 363 n n N7N H72N NAP sing 364 n n C4N C5N NAP doub 365 n y C4N H4N NAP sing 366 n n C5N C6N NAP sing 367 n y C5N H5N NAP sing 368 n n C6N H6N NAP sing 369 n n P2B O1X NAP doub 370 n n P2B O2X NAP sing 371 n n P2B O3X NAP sing 372 n n O2X HOP2 NAP sing 373 n n O3X HOP3 NAP sing 374 n n # _atom_sites.entry_id 6MNE _atom_sites.fract_transf_matrix[1][1] 0.022841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009239 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 401 2 NAP NAP . D 3 J3Z A 1 402 2 J3Z J3Z . E 4 GOL A 1 403 1 GOL GOL . F 2 NAP B 1 401 1 NAP NAP . G 3 J3Z B 1 402 1 J3Z J3Z . H 5 HOH A 1 501 17 HOH HOH . H 5 HOH A 2 502 10 HOH HOH . H 5 HOH A 3 503 9 HOH HOH . H 5 HOH A 4 504 124 HOH HOH . H 5 HOH A 5 505 69 HOH HOH . H 5 HOH A 6 506 55 HOH HOH . H 5 HOH A 7 507 94 HOH HOH . H 5 HOH A 8 508 129 HOH HOH . H 5 HOH A 9 509 39 HOH HOH . H 5 HOH A 10 510 110 HOH HOH . H 5 HOH A 11 511 33 HOH HOH . H 5 HOH A 12 512 7 HOH HOH . H 5 HOH A 13 513 72 HOH HOH . H 5 HOH A 14 514 114 HOH HOH . H 5 HOH A 15 515 76 HOH HOH . H 5 HOH A 16 516 101 HOH HOH . H 5 HOH A 17 517 113 HOH HOH . H 5 HOH A 18 518 24 HOH HOH . H 5 HOH A 19 519 13 HOH HOH . H 5 HOH A 20 520 42 HOH HOH . H 5 HOH A 21 521 5 HOH HOH . H 5 HOH A 22 522 116 HOH HOH . H 5 HOH A 23 523 20 HOH HOH . H 5 HOH A 24 524 79 HOH HOH . H 5 HOH A 25 525 81 HOH HOH . H 5 HOH A 26 526 32 HOH HOH . H 5 HOH A 27 527 23 HOH HOH . H 5 HOH A 28 528 100 HOH HOH . H 5 HOH A 29 529 1 HOH HOH . H 5 HOH A 30 530 11 HOH HOH . H 5 HOH A 31 531 53 HOH HOH . H 5 HOH A 32 532 62 HOH HOH . H 5 HOH A 33 533 8 HOH HOH . H 5 HOH A 34 534 25 HOH HOH . H 5 HOH A 35 535 15 HOH HOH . H 5 HOH A 36 536 127 HOH HOH . H 5 HOH A 37 537 34 HOH HOH . H 5 HOH A 38 538 78 HOH HOH . H 5 HOH A 39 539 47 HOH HOH . H 5 HOH A 40 540 22 HOH HOH . H 5 HOH A 41 541 30 HOH HOH . H 5 HOH A 42 542 57 HOH HOH . H 5 HOH A 43 543 99 HOH HOH . H 5 HOH A 44 544 82 HOH HOH . H 5 HOH A 45 545 12 HOH HOH . H 5 HOH A 46 546 102 HOH HOH . H 5 HOH A 47 547 128 HOH HOH . H 5 HOH A 48 548 29 HOH HOH . H 5 HOH A 49 549 50 HOH HOH . H 5 HOH A 50 550 135 HOH HOH . H 5 HOH A 51 551 68 HOH HOH . H 5 HOH A 52 552 87 HOH HOH . H 5 HOH A 53 553 105 HOH HOH . H 5 HOH A 54 554 134 HOH HOH . H 5 HOH A 55 555 108 HOH HOH . H 5 HOH A 56 556 48 HOH HOH . H 5 HOH A 57 557 64 HOH HOH . H 5 HOH A 58 558 21 HOH HOH . H 5 HOH A 59 559 89 HOH HOH . H 5 HOH A 60 560 104 HOH HOH . H 5 HOH A 61 561 28 HOH HOH . H 5 HOH A 62 562 61 HOH HOH . H 5 HOH A 63 563 115 HOH HOH . H 5 HOH A 64 564 18 HOH HOH . H 5 HOH A 65 565 70 HOH HOH . H 5 HOH A 66 566 14 HOH HOH . H 5 HOH A 67 567 75 HOH HOH . H 5 HOH A 68 568 73 HOH HOH . H 5 HOH A 69 569 74 HOH HOH . H 5 HOH A 70 570 109 HOH HOH . I 5 HOH B 1 501 65 HOH HOH . I 5 HOH B 2 502 67 HOH HOH . I 5 HOH B 3 503 59 HOH HOH . I 5 HOH B 4 504 49 HOH HOH . I 5 HOH B 5 505 77 HOH HOH . I 5 HOH B 6 506 119 HOH HOH . I 5 HOH B 7 507 43 HOH HOH . I 5 HOH B 8 508 36 HOH HOH . I 5 HOH B 9 509 85 HOH HOH . I 5 HOH B 10 510 19 HOH HOH . I 5 HOH B 11 511 118 HOH HOH . I 5 HOH B 12 512 83 HOH HOH . I 5 HOH B 13 513 66 HOH HOH . I 5 HOH B 14 514 80 HOH HOH . I 5 HOH B 15 515 54 HOH HOH . I 5 HOH B 16 516 45 HOH HOH . I 5 HOH B 17 517 103 HOH HOH . I 5 HOH B 18 518 35 HOH HOH . I 5 HOH B 19 519 92 HOH HOH . I 5 HOH B 20 520 122 HOH HOH . I 5 HOH B 21 521 2 HOH HOH . I 5 HOH B 22 522 121 HOH HOH . I 5 HOH B 23 523 132 HOH HOH . I 5 HOH B 24 524 56 HOH HOH . I 5 HOH B 25 525 46 HOH HOH . I 5 HOH B 26 526 84 HOH HOH . I 5 HOH B 27 527 133 HOH HOH . I 5 HOH B 28 528 130 HOH HOH . I 5 HOH B 29 529 71 HOH HOH . I 5 HOH B 30 530 131 HOH HOH . I 5 HOH B 31 531 4 HOH HOH . I 5 HOH B 32 532 3 HOH HOH . I 5 HOH B 33 533 27 HOH HOH . I 5 HOH B 34 534 88 HOH HOH . I 5 HOH B 35 535 51 HOH HOH . I 5 HOH B 36 536 37 HOH HOH . I 5 HOH B 37 537 44 HOH HOH . I 5 HOH B 38 538 58 HOH HOH . I 5 HOH B 39 539 26 HOH HOH . I 5 HOH B 40 540 125 HOH HOH . I 5 HOH B 41 541 86 HOH HOH . I 5 HOH B 42 542 63 HOH HOH . I 5 HOH B 43 543 41 HOH HOH . I 5 HOH B 44 544 52 HOH HOH . I 5 HOH B 45 545 40 HOH HOH . I 5 HOH B 46 546 31 HOH HOH . I 5 HOH B 47 547 117 HOH HOH . I 5 HOH B 48 548 60 HOH HOH . I 5 HOH B 49 549 106 HOH HOH . I 5 HOH B 50 550 38 HOH HOH . I 5 HOH B 51 551 126 HOH HOH . I 5 HOH B 52 552 93 HOH HOH . I 5 HOH B 53 553 90 HOH HOH . I 5 HOH B 54 554 91 HOH HOH . I 5 HOH B 55 555 111 HOH HOH . I 5 HOH B 56 556 123 HOH HOH . I 5 HOH B 57 557 112 HOH HOH . I 5 HOH B 58 558 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 8.975 13.108 -0.414 1 45.92 ? PA NAP 401 A 1 HETATM 2 O O1A NAP . . . C 2 8.901 14.345 -1.297 1 42.46 ? O1A NAP 401 A 1 HETATM 3 O O2A NAP . . . C 2 9.747 11.886 -0.865 1 42.31 ? O2A NAP 401 A 1 HETATM 4 O O5B NAP . . . C 2 9.58 13.566 1.022 1 41.3 ? O5B NAP 401 A 1 HETATM 5 C C5B NAP . . . C 2 10.506 12.783 1.79 1 35.6 ? C5B NAP 401 A 1 HETATM 6 C C4B NAP . . . C 2 11.415 13.729 2.567 1 30.87 ? C4B NAP 401 A 1 HETATM 7 O O4B NAP . . . C 2 12.022 12.95 3.606 1 30.26 ? O4B NAP 401 A 1 HETATM 8 C C3B NAP . . . C 2 12.517 14.295 1.678 1 31.12 ? C3B NAP 401 A 1 HETATM 9 O O3B NAP . . . C 2 12.897 15.679 1.924 1 29.97 ? O3B NAP 401 A 1 HETATM 10 C C2B NAP . . . C 2 13.661 13.368 2.027 1 30.15 ? C2B NAP 401 A 1 HETATM 11 O O2B NAP . . . C 2 14.936 13.924 1.66 1 33.21 ? O2B NAP 401 A 1 HETATM 12 C C1B NAP . . . C 2 13.416 13.137 3.526 1 29.99 ? C1B NAP 401 A 1 HETATM 13 N N9A NAP . . . C 2 14.296 12.054 4.054 1 27.02 ? N9A NAP 401 A 1 HETATM 14 C C8A NAP . . . C 2 14.555 10.84 3.533 1 25.96 ? C8A NAP 401 A 1 HETATM 15 N N7A NAP . . . C 2 15.5 10.205 4.265 1 24.95 ? N7A NAP 401 A 1 HETATM 16 C C5A NAP . . . C 2 15.861 11.03 5.274 1 24.6 ? C5A NAP 401 A 1 HETATM 17 C C6A NAP . . . C 2 16.81 11.003 6.4 1 24.74 ? C6A NAP 401 A 1 HETATM 18 N N6A NAP . . . C 2 17.584 9.934 6.638 1 24.8 ? N6A NAP 401 A 1 HETATM 19 N N1A NAP . . . C 2 16.873 12.088 7.213 1 24.67 ? N1A NAP 401 A 1 HETATM 20 C C2A NAP . . . C 2 16.117 13.169 6.992 1 24.69 ? C2A NAP 401 A 1 HETATM 21 N N3A NAP . . . C 2 15.24 13.273 5.979 1 24.4 ? N3A NAP 401 A 1 HETATM 22 C C4A NAP . . . C 2 15.079 12.248 5.111 1 25.78 ? C4A NAP 401 A 1 HETATM 23 O O3 NAP . . . C 2 7.467 12.592 -0.082 1 46.79 ? O3 NAP 401 A 1 HETATM 24 P PN NAP . . . C 2 6.122 13.458 0.256 1 53.41 ? PN NAP 401 A 1 HETATM 25 O O1N NAP . . . C 2 5.55 13.994 -1.161 1 55.39 ? O1N NAP 401 A 1 HETATM 26 O O2N NAP . . . C 2 5.1 12.474 0.797 1 57.76 ? O2N NAP 401 A 1 HETATM 27 O O5D NAP . . . C 2 6.434 14.681 1.068 1 39.83 ? O5D NAP 401 A 1 HETATM 28 P P2B NAP . . . C 2 15.807 13.142 0.53 1 36.42 ? P2B NAP 401 A 1 HETATM 29 O O1X NAP . . . C 2 14.887 12.96 -0.659 1 36.26 ? O1X NAP 401 A 1 HETATM 30 O O2X NAP . . . C 2 16.995 14.026 0.296 1 36.58 ? O2X NAP 401 A 1 HETATM 31 O O3X NAP . . . C 2 16.129 11.84 1.223 1 37.95 ? O3X NAP 401 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 613 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #