data_6MNX # _model_server_result.job_id 57aIZPh_F5pKLtJLsxY6lw _model_server_result.datetime_utc '2024-11-22 18:54:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":202}' # _entry.id 6MNX # _exptl.entry_id 6MNX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MNX _cell.length_a 56.77 _cell.length_b 127.666 _cell.length_c 145.031 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H,S 1 1 B,I,J,T 2 1 C,K,L,U 3 1 D,M,N,V 4 1 E,O,P,W 5 1 F,Q,R,X 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 H MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 H MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc3 G O2G GTP . A GTP 201 1_555 H MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 G O2B GTP . A GTP 201 1_555 H MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc5 H MG MG . A MG 202 1_555 S O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc6 H MG MG . A MG 202 1_555 S O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc7 B OG SER 17 B SER 17 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc8 B OG1 THR 35 B THR 35 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc9 I O2G GTP . B GTP 201 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc10 I O2B GTP . B GTP 201 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc11 J MG MG . B MG 202 1_555 T O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc12 J MG MG . B MG 202 1_555 T O HOH . B HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc13 C OG SER 17 C SER 17 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc14 C OG1 THR 35 C THR 35 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc15 K O2G GTP . C GTP 201 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc16 K O2B GTP . C GTP 201 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc17 L MG MG . C MG 202 1_555 U O HOH . C HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc18 L MG MG . C MG 202 1_555 U O HOH . C HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc19 D OG SER 17 D SER 17 1_555 N MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc20 D OG1 THR 35 D THR 35 1_555 N MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc21 M O2G GTP . D GTP 201 1_555 N MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? metalc ? metalc22 M O2B GTP . D GTP 201 1_555 N MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc23 N MG MG . D MG 202 1_555 V O HOH . D HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc24 N MG MG . D MG 202 1_555 V O HOH . D HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc25 E OG SER 17 E SER 17 1_555 P MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc26 E OG1 THR 35 E THR 35 1_555 P MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc27 O O2G GTP . E GTP 201 1_555 P MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc28 O O2B GTP . E GTP 201 1_555 P MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc29 P MG MG . E MG 202 1_555 W O HOH . E HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc30 P MG MG . E MG 202 1_555 W O HOH . E HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc31 F OG SER 17 F SER 17 1_555 R MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc32 F OG1 THR 35 F THR 35 1_555 R MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc33 Q O2G GTP . F GTP 201 1_555 R MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc34 Q O2B GTP . F GTP 201 1_555 R MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc35 R MG MG . F MG 202 1_555 X O HOH . F HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc36 R MG MG . F MG 202 1_555 X O HOH . F HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6MNX _atom_sites.fract_transf_matrix[1][1] 0.017615 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GTP A 1 201 1 GTP GTP . H 3 MG A 1 202 1 MG MG . I 2 GTP B 1 201 2 GTP GTP . J 3 MG B 1 202 2 MG MG . K 2 GTP C 1 201 3 GTP GTP . L 3 MG C 1 202 3 MG MG . M 2 GTP D 1 201 4 GTP GTP . N 3 MG D 1 202 4 MG MG . O 2 GTP E 1 201 5 GTP GTP . P 3 MG E 1 202 5 MG MG . Q 2 GTP F 1 201 6 GTP GTP . R 3 MG F 1 202 6 MG MG . S 4 HOH A 1 301 71 HOH HOH . S 4 HOH A 2 302 44 HOH HOH . S 4 HOH A 3 303 128 HOH HOH . S 4 HOH A 4 304 154 HOH HOH . S 4 HOH A 5 305 27 HOH HOH . S 4 HOH A 6 306 177 HOH HOH . S 4 HOH A 7 307 48 HOH HOH . S 4 HOH A 8 308 166 HOH HOH . S 4 HOH A 9 309 3 HOH HOH . S 4 HOH A 10 310 137 HOH HOH . S 4 HOH A 11 311 129 HOH HOH . S 4 HOH A 12 312 92 HOH HOH . S 4 HOH A 13 313 62 HOH HOH . S 4 HOH A 14 314 94 HOH HOH . S 4 HOH A 15 315 79 HOH HOH . S 4 HOH A 16 316 16 HOH HOH . S 4 HOH A 17 317 85 HOH HOH . S 4 HOH A 18 318 78 HOH HOH . S 4 HOH A 19 319 1 HOH HOH . S 4 HOH A 20 320 20 HOH HOH . S 4 HOH A 21 321 28 HOH HOH . S 4 HOH A 22 322 46 HOH HOH . S 4 HOH A 23 323 6 HOH HOH . S 4 HOH A 24 324 115 HOH HOH . S 4 HOH A 25 325 41 HOH HOH . S 4 HOH A 26 326 19 HOH HOH . S 4 HOH A 27 327 97 HOH HOH . S 4 HOH A 28 328 148 HOH HOH . S 4 HOH A 29 329 58 HOH HOH . S 4 HOH A 30 330 60 HOH HOH . S 4 HOH A 31 331 95 HOH HOH . S 4 HOH A 32 332 152 HOH HOH . S 4 HOH A 33 333 159 HOH HOH . S 4 HOH A 34 334 23 HOH HOH . S 4 HOH A 35 335 99 HOH HOH . S 4 HOH A 36 336 175 HOH HOH . S 4 HOH A 37 337 149 HOH HOH . S 4 HOH A 38 338 160 HOH HOH . S 4 HOH A 39 339 100 HOH HOH . S 4 HOH A 40 340 150 HOH HOH . S 4 HOH A 41 341 83 HOH HOH . S 4 HOH A 42 342 164 HOH HOH . S 4 HOH A 43 343 121 HOH HOH . T 4 HOH B 1 301 105 HOH HOH . T 4 HOH B 2 302 113 HOH HOH . T 4 HOH B 3 303 165 HOH HOH . T 4 HOH B 4 304 132 HOH HOH . T 4 HOH B 5 305 126 HOH HOH . T 4 HOH B 6 306 109 HOH HOH . T 4 HOH B 7 307 18 HOH HOH . T 4 HOH B 8 308 124 HOH HOH . T 4 HOH B 9 309 171 HOH HOH . T 4 HOH B 10 310 135 HOH HOH . T 4 HOH B 11 311 31 HOH HOH . T 4 HOH B 12 312 56 HOH HOH . T 4 HOH B 13 313 117 HOH HOH . T 4 HOH B 14 314 151 HOH HOH . T 4 HOH B 15 315 55 HOH HOH . T 4 HOH B 16 316 45 HOH HOH . T 4 HOH B 17 317 4 HOH HOH . T 4 HOH B 18 318 13 HOH HOH . T 4 HOH B 19 319 80 HOH HOH . T 4 HOH B 20 320 63 HOH HOH . T 4 HOH B 21 321 33 HOH HOH . T 4 HOH B 22 322 147 HOH HOH . T 4 HOH B 23 323 70 HOH HOH . T 4 HOH B 24 324 49 HOH HOH . T 4 HOH B 25 325 141 HOH HOH . T 4 HOH B 26 326 134 HOH HOH . T 4 HOH B 27 327 118 HOH HOH . T 4 HOH B 28 328 104 HOH HOH . U 4 HOH C 1 301 130 HOH HOH . U 4 HOH C 2 302 72 HOH HOH . U 4 HOH C 3 303 89 HOH HOH . U 4 HOH C 4 304 26 HOH HOH . U 4 HOH C 5 305 9 HOH HOH . U 4 HOH C 6 306 12 HOH HOH . U 4 HOH C 7 307 119 HOH HOH . U 4 HOH C 8 308 168 HOH HOH . U 4 HOH C 9 309 114 HOH HOH . U 4 HOH C 10 310 74 HOH HOH . U 4 HOH C 11 311 163 HOH HOH . U 4 HOH C 12 312 111 HOH HOH . U 4 HOH C 13 313 7 HOH HOH . U 4 HOH C 14 314 139 HOH HOH . U 4 HOH C 15 315 145 HOH HOH . U 4 HOH C 16 316 64 HOH HOH . U 4 HOH C 17 317 17 HOH HOH . U 4 HOH C 18 318 52 HOH HOH . U 4 HOH C 19 319 8 HOH HOH . U 4 HOH C 20 320 172 HOH HOH . U 4 HOH C 21 321 90 HOH HOH . U 4 HOH C 22 322 102 HOH HOH . U 4 HOH C 23 323 66 HOH HOH . U 4 HOH C 24 324 77 HOH HOH . U 4 HOH C 25 325 98 HOH HOH . U 4 HOH C 26 326 125 HOH HOH . U 4 HOH C 27 327 106 HOH HOH . U 4 HOH C 28 328 162 HOH HOH . U 4 HOH C 29 329 34 HOH HOH . U 4 HOH C 30 330 122 HOH HOH . U 4 HOH C 31 331 73 HOH HOH . U 4 HOH C 32 332 170 HOH HOH . U 4 HOH C 33 333 112 HOH HOH . U 4 HOH C 34 334 103 HOH HOH . V 4 HOH D 1 301 21 HOH HOH . V 4 HOH D 2 302 51 HOH HOH . V 4 HOH D 3 303 76 HOH HOH . V 4 HOH D 4 304 75 HOH HOH . V 4 HOH D 5 305 101 HOH HOH . V 4 HOH D 6 306 43 HOH HOH . V 4 HOH D 7 307 11 HOH HOH . V 4 HOH D 8 308 120 HOH HOH . V 4 HOH D 9 309 15 HOH HOH . V 4 HOH D 10 310 37 HOH HOH . V 4 HOH D 11 311 91 HOH HOH . V 4 HOH D 12 312 24 HOH HOH . V 4 HOH D 13 313 176 HOH HOH . V 4 HOH D 14 314 53 HOH HOH . V 4 HOH D 15 315 69 HOH HOH . V 4 HOH D 16 316 96 HOH HOH . V 4 HOH D 17 317 40 HOH HOH . V 4 HOH D 18 318 59 HOH HOH . V 4 HOH D 19 319 161 HOH HOH . V 4 HOH D 20 320 36 HOH HOH . V 4 HOH D 21 321 88 HOH HOH . V 4 HOH D 22 322 116 HOH HOH . V 4 HOH D 23 323 136 HOH HOH . V 4 HOH D 24 324 87 HOH HOH . V 4 HOH D 25 325 10 HOH HOH . V 4 HOH D 26 326 84 HOH HOH . V 4 HOH D 27 327 67 HOH HOH . V 4 HOH D 28 328 158 HOH HOH . V 4 HOH D 29 329 174 HOH HOH . V 4 HOH D 30 330 133 HOH HOH . V 4 HOH D 31 331 157 HOH HOH . V 4 HOH D 32 332 108 HOH HOH . V 4 HOH D 33 333 153 HOH HOH . V 4 HOH D 34 334 143 HOH HOH . W 4 HOH E 1 301 155 HOH HOH . W 4 HOH E 2 302 2 HOH HOH . W 4 HOH E 3 303 57 HOH HOH . W 4 HOH E 4 304 14 HOH HOH . W 4 HOH E 5 305 39 HOH HOH . W 4 HOH E 6 306 142 HOH HOH . W 4 HOH E 7 307 140 HOH HOH . W 4 HOH E 8 308 167 HOH HOH . W 4 HOH E 9 309 93 HOH HOH . W 4 HOH E 10 310 146 HOH HOH . W 4 HOH E 11 311 35 HOH HOH . W 4 HOH E 12 312 22 HOH HOH . W 4 HOH E 13 313 81 HOH HOH . W 4 HOH E 14 314 38 HOH HOH . W 4 HOH E 15 315 68 HOH HOH . W 4 HOH E 16 316 30 HOH HOH . W 4 HOH E 17 317 5 HOH HOH . W 4 HOH E 18 318 25 HOH HOH . W 4 HOH E 19 319 32 HOH HOH . W 4 HOH E 20 320 61 HOH HOH . W 4 HOH E 21 321 107 HOH HOH . W 4 HOH E 22 322 42 HOH HOH . W 4 HOH E 23 323 65 HOH HOH . W 4 HOH E 24 324 144 HOH HOH . W 4 HOH E 25 325 156 HOH HOH . W 4 HOH E 26 326 110 HOH HOH . W 4 HOH E 27 327 50 HOH HOH . W 4 HOH E 28 328 86 HOH HOH . W 4 HOH E 29 329 123 HOH HOH . W 4 HOH E 30 330 138 HOH HOH . X 4 HOH F 1 301 47 HOH HOH . X 4 HOH F 2 302 54 HOH HOH . X 4 HOH F 3 303 127 HOH HOH . X 4 HOH F 4 304 169 HOH HOH . X 4 HOH F 5 305 131 HOH HOH . X 4 HOH F 6 306 29 HOH HOH . X 4 HOH F 7 307 173 HOH HOH . X 4 HOH F 8 308 82 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 81.682 _atom_site.Cartn_y -7.238 _atom_site.Cartn_z 54.33 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #