data_6MOD # _model_server_result.job_id yBT5Sk0-fpTv-gfzx48ibA _model_server_result.datetime_utc '2024-11-08 16:07:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6MOD # _exptl.entry_id 6MOD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1S)-2-(hydroxyamino)-1-(3-methoxy-1,1-dioxo-1lambda~6~-thietan-3-yl)-2-oxoethyl]-4-(6-hydroxyhexa-1,3-diyn-1-yl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.08 _cell.angle_gamma 90 _cell.entry_id 6MOD _cell.length_a 36.079 _cell.length_b 66.911 _cell.length_c 63.462 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 246 A ASP 241 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc2 A OD2 ASP 246 A ASP 241 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc3 B MG MG . A MG 301 1_555 C O7 JWV . A JWV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc4 B MG MG . A MG 301 1_555 C O6 JWV . A JWV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? # _chem_comp.formula 'C19 H20 N2 O7 S' _chem_comp.formula_weight 420.436 _chem_comp.id JWV _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1S)-2-(hydroxyamino)-1-(3-methoxy-1,1-dioxo-1lambda~6~-thietan-3-yl)-2-oxoethyl]-4-(6-hydroxyhexa-1,3-diyn-1-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 JWV sing 186 n n C2 C3 JWV sing 187 n n C1 O1 JWV sing 188 n n C3 C4 JWV trip 189 n n C4 C5 JWV sing 190 n n C5 C6 JWV trip 191 n n C6 C7 JWV sing 192 n n C7 C8 JWV doub 193 n y C7 C12 JWV sing 194 n y C8 C9 JWV sing 195 n y C9 C10 JWV doub 196 n y C10 C11 JWV sing 197 n y C10 C13 JWV sing 198 n n C11 C12 JWV doub 199 n y C13 O2 JWV doub 200 n n C13 N1 JWV sing 201 n n N1 C14 JWV sing 202 n n C14 C15 JWV sing 203 n n C14 C19 JWV sing 204 n n C15 C16 JWV sing 205 n n C15 C17 JWV sing 206 n n C15 O5 JWV sing 207 n n C16 S1 JWV sing 208 n n S1 C17 JWV sing 209 n n S1 O3 JWV doub 210 n n S1 O4 JWV doub 211 n n O5 C18 JWV sing 212 n n C19 O6 JWV doub 213 n n C19 N2 JWV sing 214 n n N2 O7 JWV sing 215 n n C2 H1 JWV sing 216 n n C2 H2 JWV sing 217 n n C1 H3 JWV sing 218 n n C1 H4 JWV sing 219 n n O1 H5 JWV sing 220 n n C8 H6 JWV sing 221 n n C9 H7 JWV sing 222 n n C11 H8 JWV sing 223 n n C12 H9 JWV sing 224 n n N1 H10 JWV sing 225 n n C14 H11 JWV sing 226 n n C16 H12 JWV sing 227 n n C16 H13 JWV sing 228 n n C17 H14 JWV sing 229 n n C17 H15 JWV sing 230 n n C18 H18 JWV sing 231 n n C18 H19 JWV sing 232 n n C18 H20 JWV sing 233 n n N2 H21 JWV sing 234 n n O7 H22 JWV sing 235 n n # _atom_sites.entry_id 6MOD _atom_sites.fract_transf_matrix[1][1] 0.027717 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000522 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014945 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 1 MG MG . C 3 JWV A 1 302 2 JWV 432 . D 4 GOL A 1 303 3 GOL GOL . E 4 GOL A 1 304 4 GOL GOL . F 5 HOH A 1 401 89 HOH HOH . F 5 HOH A 2 402 77 HOH HOH . F 5 HOH A 3 403 90 HOH HOH . F 5 HOH A 4 404 5 HOH HOH . F 5 HOH A 5 405 20 HOH HOH . F 5 HOH A 6 406 46 HOH HOH . F 5 HOH A 7 407 75 HOH HOH . F 5 HOH A 8 408 76 HOH HOH . F 5 HOH A 9 409 72 HOH HOH . F 5 HOH A 10 410 39 HOH HOH . F 5 HOH A 11 411 15 HOH HOH . F 5 HOH A 12 412 50 HOH HOH . F 5 HOH A 13 413 57 HOH HOH . F 5 HOH A 14 414 74 HOH HOH . F 5 HOH A 15 415 52 HOH HOH . F 5 HOH A 16 416 55 HOH HOH . F 5 HOH A 17 417 35 HOH HOH . F 5 HOH A 18 418 17 HOH HOH . F 5 HOH A 19 419 19 HOH HOH . F 5 HOH A 20 420 59 HOH HOH . F 5 HOH A 21 421 3 HOH HOH . F 5 HOH A 22 422 23 HOH HOH . F 5 HOH A 23 423 43 HOH HOH . F 5 HOH A 24 424 31 HOH HOH . F 5 HOH A 25 425 16 HOH HOH . F 5 HOH A 26 426 54 HOH HOH . F 5 HOH A 27 427 58 HOH HOH . F 5 HOH A 28 428 2 HOH HOH . F 5 HOH A 29 429 79 HOH HOH . F 5 HOH A 30 430 26 HOH HOH . F 5 HOH A 31 431 71 HOH HOH . F 5 HOH A 32 432 36 HOH HOH . F 5 HOH A 33 433 80 HOH HOH . F 5 HOH A 34 434 29 HOH HOH . F 5 HOH A 35 435 70 HOH HOH . F 5 HOH A 36 436 48 HOH HOH . F 5 HOH A 37 437 33 HOH HOH . F 5 HOH A 38 438 61 HOH HOH . F 5 HOH A 39 439 82 HOH HOH . F 5 HOH A 40 440 40 HOH HOH . F 5 HOH A 41 441 53 HOH HOH . F 5 HOH A 42 442 14 HOH HOH . F 5 HOH A 43 443 93 HOH HOH . F 5 HOH A 44 444 60 HOH HOH . F 5 HOH A 45 445 8 HOH HOH . F 5 HOH A 46 446 69 HOH HOH . F 5 HOH A 47 447 25 HOH HOH . F 5 HOH A 48 448 6 HOH HOH . F 5 HOH A 49 449 34 HOH HOH . F 5 HOH A 50 450 51 HOH HOH . F 5 HOH A 51 451 66 HOH HOH . F 5 HOH A 52 452 12 HOH HOH . F 5 HOH A 53 453 9 HOH HOH . F 5 HOH A 54 454 73 HOH HOH . F 5 HOH A 55 455 86 HOH HOH . F 5 HOH A 56 456 88 HOH HOH . F 5 HOH A 57 457 27 HOH HOH . F 5 HOH A 58 458 68 HOH HOH . F 5 HOH A 59 459 37 HOH HOH . F 5 HOH A 60 460 45 HOH HOH . F 5 HOH A 61 461 1 HOH HOH . F 5 HOH A 62 462 4 HOH HOH . F 5 HOH A 63 463 30 HOH HOH . F 5 HOH A 64 464 32 HOH HOH . F 5 HOH A 65 465 78 HOH HOH . F 5 HOH A 66 466 21 HOH HOH . F 5 HOH A 67 467 10 HOH HOH . F 5 HOH A 68 468 49 HOH HOH . F 5 HOH A 69 469 65 HOH HOH . F 5 HOH A 70 470 83 HOH HOH . F 5 HOH A 71 471 47 HOH HOH . F 5 HOH A 72 472 92 HOH HOH . F 5 HOH A 73 473 18 HOH HOH . F 5 HOH A 74 474 63 HOH HOH . F 5 HOH A 75 475 87 HOH HOH . F 5 HOH A 76 476 42 HOH HOH . F 5 HOH A 77 477 64 HOH HOH . F 5 HOH A 78 478 7 HOH HOH . F 5 HOH A 79 479 11 HOH HOH . F 5 HOH A 80 480 28 HOH HOH . F 5 HOH A 81 481 91 HOH HOH . F 5 HOH A 82 482 67 HOH HOH . F 5 HOH A 83 483 38 HOH HOH . F 5 HOH A 84 484 56 HOH HOH . F 5 HOH A 85 485 41 HOH HOH . F 5 HOH A 86 486 62 HOH HOH . F 5 HOH A 87 487 85 HOH HOH . F 5 HOH A 88 488 44 HOH HOH . F 5 HOH A 89 489 13 HOH HOH . F 5 HOH A 90 490 22 HOH HOH . F 5 HOH A 91 491 24 HOH HOH . F 5 HOH A 92 492 94 HOH HOH . F 5 HOH A 93 493 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 JWV . . . C 3 -19.37 -18.802 -32.968 1 41.5 ? C2 JWV 302 A 1 HETATM 2 C C1 JWV . . . C 3 -18.752 -19.289 -34.234 1 45.73 ? C1 JWV 302 A 1 HETATM 3 O O1 JWV . . . C 3 -18.365 -20.63 -34.024 1 48.23 ? O1 JWV 302 A 1 HETATM 4 C C3 JWV . . . C 3 -18.358 -18.539 -31.972 1 35.46 ? C3 JWV 302 A 1 HETATM 5 C C4 JWV . . . C 3 -17.551 -18.271 -31.14 1 30.23 ? C4 JWV 302 A 1 HETATM 6 C C5 JWV . . . C 3 -16.583 -18.056 -30.196 1 27.23 ? C5 JWV 302 A 1 HETATM 7 C C6 JWV . . . C 3 -15.73 -17.831 -29.397 1 24.53 ? C6 JWV 302 A 1 HETATM 8 C C7 JWV . . . C 3 -14.706 -17.597 -28.458 1 23.64 ? C7 JWV 302 A 1 HETATM 9 C C8 JWV . . . C 3 -13.402 -17.821 -28.765 1 23.64 ? C8 JWV 302 A 1 HETATM 10 C C9 JWV . . . C 3 -12.414 -17.604 -27.836 1 23.82 ? C9 JWV 302 A 1 HETATM 11 C C10 JWV . . . C 3 -12.715 -17.137 -26.593 1 22.4 ? C10 JWV 302 A 1 HETATM 12 C C11 JWV . . . C 3 -14.019 -16.893 -26.287 1 22.67 ? C11 JWV 302 A 1 HETATM 13 C C12 JWV . . . C 3 -15.003 -17.135 -27.216 1 22.71 ? C12 JWV 302 A 1 HETATM 14 C C13 JWV . . . C 3 -11.627 -16.93 -25.631 1 22.67 ? C13 JWV 302 A 1 HETATM 15 O O2 JWV . . . C 3 -10.526 -17.313 -25.931 1 24.12 ? O2 JWV 302 A 1 HETATM 16 N N1 JWV . . . C 3 -11.873 -16.156 -24.549 1 21.48 ? N1 JWV 302 A 1 HETATM 17 C C14 JWV . . . C 3 -10.789 -15.752 -23.715 1 23.08 ? C14 JWV 302 A 1 HETATM 18 C C15 JWV . . . C 3 -10.389 -14.31 -23.987 1 23.97 ? C15 JWV 302 A 1 HETATM 19 C C16 JWV . . . C 3 -9.685 -13.67 -22.795 1 24.62 ? C16 JWV 302 A 1 HETATM 20 S S1 JWV . . . C 3 -10.469 -12.155 -23.095 1 25.41 ? S1 JWV 302 A 1 HETATM 21 C C17 JWV . . . C 3 -11.518 -13.316 -23.863 1 24.98 ? C17 JWV 302 A 1 HETATM 22 O O3 JWV . . . C 3 -9.74 -11.357 -23.99 1 27.65 ? O3 JWV 302 A 1 HETATM 23 O O4 JWV . . . C 3 -11.082 -11.563 -21.971 1 24.89 ? O4 JWV 302 A 1 HETATM 24 O O5 JWV . . . C 3 -9.715 -14.173 -25.224 1 24.84 ? O5 JWV 302 A 1 HETATM 25 C C18 JWV . . . C 3 -8.439 -14.741 -25.288 1 25.56 ? C18 JWV 302 A 1 HETATM 26 C C19 JWV . . . C 3 -11.273 -15.899 -22.307 1 23.39 ? C19 JWV 302 A 1 HETATM 27 O O6 JWV . . . C 3 -12.272 -15.375 -21.88 1 23.42 ? O6 JWV 302 A 1 HETATM 28 N N2 JWV . . . C 3 -10.427 -16.643 -21.565 1 23.55 ? N2 JWV 302 A 1 HETATM 29 O O7 JWV . . . C 3 -10.739 -16.794 -20.223 1 22.58 ? O7 JWV 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #