data_6MOD
#
_model_server_result.job_id            Mp_wqDBwQALExJvwyGnecw 
_model_server_result.datetime_utc      '2024-11-30 15:42:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mod 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    6MOD 
#
_exptl.entry_id    6MOD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.08 
_cell.angle_gamma         90 
_cell.entry_id            6MOD 
_cell.length_a            36.079 
_cell.length_b            66.911 
_cell.length_c            63.462 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MOD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 246 A ASP 241 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc2 A OD2 ASP 246 A ASP 241 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc3 B MG MG . A MG 301 1_555 C O7 JWV . A JWV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc4 B MG MG . A MG 301 1_555 C O6 JWV . A JWV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6MOD 
_atom_sites.fract_transf_matrix[1][1]    0.027717 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000522 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014945 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01576 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 301 1 MG MG . 
C 3 JWV A 1 302 2 JWV 432 . 
D 4 GOL A 1 303 3 GOL GOL . 
E 4 GOL A 1 304 4 GOL GOL . 
F 5 HOH A 1 401 89 HOH HOH . 
F 5 HOH A 2 402 77 HOH HOH . 
F 5 HOH A 3 403 90 HOH HOH . 
F 5 HOH A 4 404 5 HOH HOH . 
F 5 HOH A 5 405 20 HOH HOH . 
F 5 HOH A 6 406 46 HOH HOH . 
F 5 HOH A 7 407 75 HOH HOH . 
F 5 HOH A 8 408 76 HOH HOH . 
F 5 HOH A 9 409 72 HOH HOH . 
F 5 HOH A 10 410 39 HOH HOH . 
F 5 HOH A 11 411 15 HOH HOH . 
F 5 HOH A 12 412 50 HOH HOH . 
F 5 HOH A 13 413 57 HOH HOH . 
F 5 HOH A 14 414 74 HOH HOH . 
F 5 HOH A 15 415 52 HOH HOH . 
F 5 HOH A 16 416 55 HOH HOH . 
F 5 HOH A 17 417 35 HOH HOH . 
F 5 HOH A 18 418 17 HOH HOH . 
F 5 HOH A 19 419 19 HOH HOH . 
F 5 HOH A 20 420 59 HOH HOH . 
F 5 HOH A 21 421 3 HOH HOH . 
F 5 HOH A 22 422 23 HOH HOH . 
F 5 HOH A 23 423 43 HOH HOH . 
F 5 HOH A 24 424 31 HOH HOH . 
F 5 HOH A 25 425 16 HOH HOH . 
F 5 HOH A 26 426 54 HOH HOH . 
F 5 HOH A 27 427 58 HOH HOH . 
F 5 HOH A 28 428 2 HOH HOH . 
F 5 HOH A 29 429 79 HOH HOH . 
F 5 HOH A 30 430 26 HOH HOH . 
F 5 HOH A 31 431 71 HOH HOH . 
F 5 HOH A 32 432 36 HOH HOH . 
F 5 HOH A 33 433 80 HOH HOH . 
F 5 HOH A 34 434 29 HOH HOH . 
F 5 HOH A 35 435 70 HOH HOH . 
F 5 HOH A 36 436 48 HOH HOH . 
F 5 HOH A 37 437 33 HOH HOH . 
F 5 HOH A 38 438 61 HOH HOH . 
F 5 HOH A 39 439 82 HOH HOH . 
F 5 HOH A 40 440 40 HOH HOH . 
F 5 HOH A 41 441 53 HOH HOH . 
F 5 HOH A 42 442 14 HOH HOH . 
F 5 HOH A 43 443 93 HOH HOH . 
F 5 HOH A 44 444 60 HOH HOH . 
F 5 HOH A 45 445 8 HOH HOH . 
F 5 HOH A 46 446 69 HOH HOH . 
F 5 HOH A 47 447 25 HOH HOH . 
F 5 HOH A 48 448 6 HOH HOH . 
F 5 HOH A 49 449 34 HOH HOH . 
F 5 HOH A 50 450 51 HOH HOH . 
F 5 HOH A 51 451 66 HOH HOH . 
F 5 HOH A 52 452 12 HOH HOH . 
F 5 HOH A 53 453 9 HOH HOH . 
F 5 HOH A 54 454 73 HOH HOH . 
F 5 HOH A 55 455 86 HOH HOH . 
F 5 HOH A 56 456 88 HOH HOH . 
F 5 HOH A 57 457 27 HOH HOH . 
F 5 HOH A 58 458 68 HOH HOH . 
F 5 HOH A 59 459 37 HOH HOH . 
F 5 HOH A 60 460 45 HOH HOH . 
F 5 HOH A 61 461 1 HOH HOH . 
F 5 HOH A 62 462 4 HOH HOH . 
F 5 HOH A 63 463 30 HOH HOH . 
F 5 HOH A 64 464 32 HOH HOH . 
F 5 HOH A 65 465 78 HOH HOH . 
F 5 HOH A 66 466 21 HOH HOH . 
F 5 HOH A 67 467 10 HOH HOH . 
F 5 HOH A 68 468 49 HOH HOH . 
F 5 HOH A 69 469 65 HOH HOH . 
F 5 HOH A 70 470 83 HOH HOH . 
F 5 HOH A 71 471 47 HOH HOH . 
F 5 HOH A 72 472 92 HOH HOH . 
F 5 HOH A 73 473 18 HOH HOH . 
F 5 HOH A 74 474 63 HOH HOH . 
F 5 HOH A 75 475 87 HOH HOH . 
F 5 HOH A 76 476 42 HOH HOH . 
F 5 HOH A 77 477 64 HOH HOH . 
F 5 HOH A 78 478 7 HOH HOH . 
F 5 HOH A 79 479 11 HOH HOH . 
F 5 HOH A 80 480 28 HOH HOH . 
F 5 HOH A 81 481 91 HOH HOH . 
F 5 HOH A 82 482 67 HOH HOH . 
F 5 HOH A 83 483 38 HOH HOH . 
F 5 HOH A 84 484 56 HOH HOH . 
F 5 HOH A 85 485 41 HOH HOH . 
F 5 HOH A 86 486 62 HOH HOH . 
F 5 HOH A 87 487 85 HOH HOH . 
F 5 HOH A 88 488 44 HOH HOH . 
F 5 HOH A 89 489 13 HOH HOH . 
F 5 HOH A 90 490 22 HOH HOH . 
F 5 HOH A 91 491 24 HOH HOH . 
F 5 HOH A 92 492 94 HOH HOH . 
F 5 HOH A 93 493 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -9.157 -12.592 -4.277 1 39.98 ? C1 GOL 303 A 1 
HETATM 2 O O1 GOL . . . D 4 -10.279 -11.826 -4.713 1 46.13 ? O1 GOL 303 A 1 
HETATM 3 C C2 GOL . . . D 4 -8.045 -12.659 -5.343 1 38.29 ? C2 GOL 303 A 1 
HETATM 4 O O2 GOL . . . D 4 -8.487 -13.382 -6.528 1 32.3 ? O2 GOL 303 A 1 
HETATM 5 C C3 GOL . . . D 4 -6.811 -13.24 -4.619 1 33.21 ? C3 GOL 303 A 1 
HETATM 6 O O3 GOL . . . D 4 -5.907 -14.194 -5.163 1 27.84 ? O3 GOL 303 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           763 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#