data_6MOG # _model_server_result.job_id fgIBFb3mYiPAglg4hVK1sQ _model_server_result.datetime_utc '2024-10-12 09:23:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":203}' # _entry.id 6MOG # _exptl.entry_id 6MOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.13 _cell.angle_gamma 90 _cell.entry_id 6MOG _cell.length_a 36.25 _cell.length_b 89.81 _cell.length_c 44.27 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,N 1 1 B,J,K,L,M,O 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_746 -x+2,y-1/2,-z+1 -1 0 0 0 1 0 0 0 -1 65.475455 -44.905 43.709137 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 6MOG _atom_sites.fract_transf_matrix[1][1] 0.027586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004434 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 201 1 EDO EDO . D 2 EDO A 1 202 3 EDO EDO . E 2 EDO A 1 203 6 EDO EDO . F 2 EDO A 1 204 8 EDO EDO . G 2 EDO A 1 205 9 EDO EDO . H 2 EDO A 1 206 11 EDO EDO . I 2 EDO A 1 207 12 EDO EDO . J 2 EDO B 1 201 4 EDO EDO . K 2 EDO B 1 202 5 EDO EDO . L 2 EDO B 1 203 10 EDO EDO . M 3 PGE B 1 204 1 PGE PGE . N 4 HOH A 1 301 52 HOH HOH . N 4 HOH A 2 302 63 HOH HOH . N 4 HOH A 3 303 110 HOH HOH . N 4 HOH A 4 304 219 HOH HOH . N 4 HOH A 5 305 20 HOH HOH . N 4 HOH A 6 306 157 HOH HOH . N 4 HOH A 7 307 149 HOH HOH . N 4 HOH A 8 308 31 HOH HOH . N 4 HOH A 9 309 22 HOH HOH . N 4 HOH A 10 310 73 HOH HOH . N 4 HOH A 11 311 235 HOH HOH . N 4 HOH A 12 312 6 HOH HOH . N 4 HOH A 13 313 133 HOH HOH . N 4 HOH A 14 314 95 HOH HOH . N 4 HOH A 15 315 56 HOH HOH . N 4 HOH A 16 316 237 HOH HOH . N 4 HOH A 17 317 7 HOH HOH . N 4 HOH A 18 318 136 HOH HOH . N 4 HOH A 19 319 24 HOH HOH . N 4 HOH A 20 320 80 HOH HOH . N 4 HOH A 21 321 29 HOH HOH . N 4 HOH A 22 322 51 HOH HOH . N 4 HOH A 23 323 3 HOH HOH . N 4 HOH A 24 324 141 HOH HOH . N 4 HOH A 25 325 125 HOH HOH . N 4 HOH A 26 326 107 HOH HOH . N 4 HOH A 27 327 114 HOH HOH . N 4 HOH A 28 328 90 HOH HOH . N 4 HOH A 29 329 72 HOH HOH . N 4 HOH A 30 330 2 HOH HOH . N 4 HOH A 31 331 42 HOH HOH . N 4 HOH A 32 332 82 HOH HOH . N 4 HOH A 33 333 122 HOH HOH . N 4 HOH A 34 334 220 HOH HOH . N 4 HOH A 35 335 9 HOH HOH . N 4 HOH A 36 336 236 HOH HOH . N 4 HOH A 37 337 16 HOH HOH . N 4 HOH A 38 338 128 HOH HOH . N 4 HOH A 39 339 68 HOH HOH . N 4 HOH A 40 340 123 HOH HOH . N 4 HOH A 41 341 101 HOH HOH . N 4 HOH A 42 342 55 HOH HOH . N 4 HOH A 43 343 156 HOH HOH . N 4 HOH A 44 344 37 HOH HOH . N 4 HOH A 45 345 124 HOH HOH . N 4 HOH A 46 346 5 HOH HOH . N 4 HOH A 47 347 103 HOH HOH . N 4 HOH A 48 348 62 HOH HOH . N 4 HOH A 49 349 186 HOH HOH . N 4 HOH A 50 350 59 HOH HOH . N 4 HOH A 51 351 45 HOH HOH . N 4 HOH A 52 352 137 HOH HOH . N 4 HOH A 53 353 163 HOH HOH . N 4 HOH A 54 354 131 HOH HOH . N 4 HOH A 55 355 162 HOH HOH . N 4 HOH A 56 356 8 HOH HOH . N 4 HOH A 57 357 93 HOH HOH . N 4 HOH A 58 358 40 HOH HOH . N 4 HOH A 59 359 69 HOH HOH . N 4 HOH A 60 360 182 HOH HOH . N 4 HOH A 61 361 15 HOH HOH . N 4 HOH A 62 362 217 HOH HOH . N 4 HOH A 63 363 111 HOH HOH . N 4 HOH A 64 364 12 HOH HOH . N 4 HOH A 65 365 184 HOH HOH . N 4 HOH A 66 366 34 HOH HOH . N 4 HOH A 67 367 193 HOH HOH . N 4 HOH A 68 368 155 HOH HOH . N 4 HOH A 69 369 175 HOH HOH . N 4 HOH A 70 370 201 HOH HOH . N 4 HOH A 71 371 121 HOH HOH . N 4 HOH A 72 372 26 HOH HOH . N 4 HOH A 73 373 19 HOH HOH . N 4 HOH A 74 374 109 HOH HOH . N 4 HOH A 75 375 54 HOH HOH . N 4 HOH A 76 376 36 HOH HOH . N 4 HOH A 77 377 88 HOH HOH . N 4 HOH A 78 378 75 HOH HOH . N 4 HOH A 79 379 239 HOH HOH . N 4 HOH A 80 380 112 HOH HOH . N 4 HOH A 81 381 94 HOH HOH . N 4 HOH A 82 382 172 HOH HOH . N 4 HOH A 83 383 116 HOH HOH . N 4 HOH A 84 384 105 HOH HOH . N 4 HOH A 85 385 27 HOH HOH . N 4 HOH A 86 386 85 HOH HOH . N 4 HOH A 87 387 221 HOH HOH . N 4 HOH A 88 388 231 HOH HOH . N 4 HOH A 89 389 197 HOH HOH . N 4 HOH A 90 390 180 HOH HOH . N 4 HOH A 91 391 150 HOH HOH . N 4 HOH A 92 392 227 HOH HOH . N 4 HOH A 93 393 229 HOH HOH . N 4 HOH A 94 394 71 HOH HOH . O 4 HOH B 1 301 233 HOH HOH . O 4 HOH B 2 302 178 HOH HOH . O 4 HOH B 3 303 222 HOH HOH . O 4 HOH B 4 304 25 HOH HOH . O 4 HOH B 5 305 30 HOH HOH . O 4 HOH B 6 306 38 HOH HOH . O 4 HOH B 7 307 226 HOH HOH . O 4 HOH B 8 308 23 HOH HOH . O 4 HOH B 9 309 70 HOH HOH . O 4 HOH B 10 310 166 HOH HOH . O 4 HOH B 11 311 127 HOH HOH . O 4 HOH B 12 312 78 HOH HOH . O 4 HOH B 13 313 1 HOH HOH . O 4 HOH B 14 314 61 HOH HOH . O 4 HOH B 15 315 60 HOH HOH . O 4 HOH B 16 316 14 HOH HOH . O 4 HOH B 17 317 108 HOH HOH . O 4 HOH B 18 318 100 HOH HOH . O 4 HOH B 19 319 35 HOH HOH . O 4 HOH B 20 320 10 HOH HOH . O 4 HOH B 21 321 196 HOH HOH . O 4 HOH B 22 322 81 HOH HOH . O 4 HOH B 23 323 234 HOH HOH . O 4 HOH B 24 324 13 HOH HOH . O 4 HOH B 25 325 177 HOH HOH . O 4 HOH B 26 326 113 HOH HOH . O 4 HOH B 27 327 144 HOH HOH . O 4 HOH B 28 328 216 HOH HOH . O 4 HOH B 29 329 120 HOH HOH . O 4 HOH B 30 330 77 HOH HOH . O 4 HOH B 31 331 119 HOH HOH . O 4 HOH B 32 332 4 HOH HOH . O 4 HOH B 33 333 176 HOH HOH . O 4 HOH B 34 334 102 HOH HOH . O 4 HOH B 35 335 99 HOH HOH . O 4 HOH B 36 336 154 HOH HOH . O 4 HOH B 37 337 65 HOH HOH . O 4 HOH B 38 338 115 HOH HOH . O 4 HOH B 39 339 48 HOH HOH . O 4 HOH B 40 340 11 HOH HOH . O 4 HOH B 41 341 96 HOH HOH . O 4 HOH B 42 342 53 HOH HOH . O 4 HOH B 43 343 89 HOH HOH . O 4 HOH B 44 344 46 HOH HOH . O 4 HOH B 45 345 50 HOH HOH . O 4 HOH B 46 346 152 HOH HOH . O 4 HOH B 47 347 92 HOH HOH . O 4 HOH B 48 348 84 HOH HOH . O 4 HOH B 49 349 104 HOH HOH . O 4 HOH B 50 350 189 HOH HOH . O 4 HOH B 51 351 170 HOH HOH . O 4 HOH B 52 352 225 HOH HOH . O 4 HOH B 53 353 17 HOH HOH . O 4 HOH B 54 354 49 HOH HOH . O 4 HOH B 55 355 187 HOH HOH . O 4 HOH B 56 356 87 HOH HOH . O 4 HOH B 57 357 140 HOH HOH . O 4 HOH B 58 358 58 HOH HOH . O 4 HOH B 59 359 126 HOH HOH . O 4 HOH B 60 360 142 HOH HOH . O 4 HOH B 61 361 28 HOH HOH . O 4 HOH B 62 362 44 HOH HOH . O 4 HOH B 63 363 43 HOH HOH . O 4 HOH B 64 364 203 HOH HOH . O 4 HOH B 65 365 153 HOH HOH . O 4 HOH B 66 366 195 HOH HOH . O 4 HOH B 67 367 215 HOH HOH . O 4 HOH B 68 368 146 HOH HOH . O 4 HOH B 69 369 192 HOH HOH . O 4 HOH B 70 370 218 HOH HOH . O 4 HOH B 71 371 64 HOH HOH . O 4 HOH B 72 372 159 HOH HOH . O 4 HOH B 73 373 47 HOH HOH . O 4 HOH B 74 374 232 HOH HOH . O 4 HOH B 75 375 32 HOH HOH . O 4 HOH B 76 376 228 HOH HOH . O 4 HOH B 77 377 230 HOH HOH . O 4 HOH B 78 378 174 HOH HOH . O 4 HOH B 79 379 209 HOH HOH . O 4 HOH B 80 380 179 HOH HOH . O 4 HOH B 81 381 238 HOH HOH . O 4 HOH B 82 382 134 HOH HOH . O 4 HOH B 83 383 210 HOH HOH . O 4 HOH B 84 384 188 HOH HOH . O 4 HOH B 85 385 183 HOH HOH . O 4 HOH B 86 386 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 2 22.475 21.067 11.875 1 47.53 ? C1 EDO 203 B 1 HETATM 2 O O1 EDO . . . L 2 23.82 21.315 11.45 1 47.4 ? O1 EDO 203 B 1 HETATM 3 C C2 EDO . . . L 2 21.718 20.223 10.852 1 48.29 ? C2 EDO 203 B 1 HETATM 4 O O2 EDO . . . L 2 21.064 19.13 11.529 1 49.2 ? O2 EDO 203 B 1 HETATM 5 H H11 EDO . . . L 2 22.488 20.548 12.835 1 57.03 ? H11 EDO 203 B 1 HETATM 6 H H12 EDO . . . L 2 21.958 22.018 12.014 1 57.03 ? H12 EDO 203 B 1 HETATM 7 H HO1 EDO . . . L 2 24.275 21.85 12.115 1 56.87 ? HO1 EDO 203 B 1 HETATM 8 H H21 EDO . . . L 2 20.976 20.839 10.34 1 57.94 ? H21 EDO 203 B 1 HETATM 9 H H22 EDO . . . L 2 22.413 19.833 10.106 1 57.94 ? H22 EDO 203 B 1 HETATM 10 H HO2 EDO . . . L 2 20.583 18.594 10.883 1 59.03 ? HO2 EDO 203 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #