data_6MOI # _model_server_result.job_id 2xNTgtf3ymIcvKZ-gxss0g _model_server_result.datetime_utc '2024-10-12 09:20:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6moi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":304}' # _entry.id 6MOI # _exptl.entry_id 6MOI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6MOI _cell.length_a 112.748 _cell.length_b 112.748 _cell.length_c 280.793 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MOI _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 56.374 -97.642632 -46.798833 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 26 B CYS 28 1_555 B SG CYS 36 B CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 65 B CYS 67 1_555 B SG CYS 81 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 J MG MG . A MG 308 1_555 T O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc2 N O3 SO4 . B SO4 301 1_555 S MG MG . B MG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6MOI _atom_sites.fract_transf_matrix[1][1] 0.008869 _atom_sites.fract_transf_matrix[1][2] 0.005121 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010241 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 301 3 SO4 SO4 . D 4 EDO A 1 302 4 EDO EDO . E 4 EDO A 1 303 6 EDO EDO . F 4 EDO A 1 304 8 EDO EDO . G 4 EDO A 1 305 9 EDO EDO . H 4 EDO A 1 306 10 EDO EDO . I 4 EDO A 1 307 12 EDO EDO . J 5 MG A 1 308 1 MG MG . K 6 PEG A 1 309 2 PEG PEG . L 7 PGE A 1 310 2 PGE PGE . M 8 PG4 A 1 311 1 PG4 PG4 . N 3 SO4 B 1 301 1 SO4 SO4 . O 4 EDO B 1 302 1 EDO EDO . P 4 EDO B 1 303 5 EDO EDO . Q 4 EDO B 1 304 7 EDO EDO . R 4 EDO B 1 305 11 EDO EDO . S 5 MG B 1 306 2 MG MG . T 9 HOH A 1 401 12 HOH HOH . T 9 HOH A 2 402 23 HOH HOH . T 9 HOH A 3 403 32 HOH HOH . T 9 HOH A 4 404 25 HOH HOH . T 9 HOH A 5 405 22 HOH HOH . T 9 HOH A 6 406 26 HOH HOH . T 9 HOH A 7 407 31 HOH HOH . T 9 HOH A 8 408 24 HOH HOH . T 9 HOH A 9 409 3 HOH HOH . T 9 HOH A 10 410 19 HOH HOH . T 9 HOH A 11 411 11 HOH HOH . T 9 HOH A 12 412 17 HOH HOH . T 9 HOH A 13 413 18 HOH HOH . T 9 HOH A 14 414 9 HOH HOH . T 9 HOH A 15 415 10 HOH HOH . U 9 HOH B 1 401 2 HOH HOH . U 9 HOH B 2 402 4 HOH HOH . U 9 HOH B 3 403 27 HOH HOH . U 9 HOH B 4 404 29 HOH HOH . U 9 HOH B 5 405 21 HOH HOH . U 9 HOH B 6 406 20 HOH HOH . U 9 HOH B 7 407 30 HOH HOH . U 9 HOH B 8 408 1 HOH HOH . U 9 HOH B 9 409 16 HOH HOH . U 9 HOH B 10 410 33 HOH HOH . U 9 HOH B 11 411 28 HOH HOH . U 9 HOH B 12 412 14 HOH HOH . U 9 HOH B 13 413 13 HOH HOH . U 9 HOH B 14 414 15 HOH HOH . U 9 HOH B 15 415 6 HOH HOH . U 9 HOH B 16 416 5 HOH HOH . U 9 HOH B 17 417 34 HOH HOH . U 9 HOH B 18 418 8 HOH HOH . U 9 HOH B 19 419 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . Q 4 49.955 -35.68 -22.817 0.52 47.67 ? C1 EDO 304 B 1 HETATM 2 O O1 EDO . . . Q 4 49.65 -36.52 -21.698 0.52 47.73 ? O1 EDO 304 B 1 HETATM 3 C C2 EDO . . . Q 4 50.458 -36.536 -23.972 0.52 47.71 ? C2 EDO 304 B 1 HETATM 4 O O2 EDO . . . Q 4 49.585 -36.382 -25.097 0.52 47.72 ? O2 EDO 304 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #