data_6MON
#
_model_server_result.job_id            xDLna5JTOaZRNTGeFNuPVA 
_model_server_result.datetime_utc      '2024-11-29 08:39:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mon 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":504}' 
#
_entry.id    6MON 
#
_exptl.entry_id    6MON 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MON 
_cell.length_a            153.728 
_cell.length_b            153.728 
_cell.length_c            53.457 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MON 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        77 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,N 1 1 
B,D,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C LEU 2 C LEU -1 1_555 C N NLE 3 C NLE 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 C C NLE 3 C NLE 0 1_555 C N SER 4 C SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale3 D C LEU 2 D LEU -1 1_555 D N NLE 3 D NLE 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 D C NLE 3 D NLE 0 1_555 D N SER 4 D SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 A SG CYS 48 A CYS 52 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc2 A SG CYS 51 A CYS 55 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc3 A SG CYS 61 A CYS 65 1_555 F ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc4 A SG CYS 64 A CYS 68 1_555 F ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc5 A SG CYS 70 A CYS 74 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc6 A SG CYS 74 A CYS 78 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc7 A NE2 HIS 82 A HIS 86 1_555 F ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc8 A SG CYS 86 A CYS 90 1_555 F ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc9 A SG CYS 205 A CYS 209 1_555 G ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc10 A SG CYS 258 A CYS 262 1_555 G ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc11 A SG CYS 260 A CYS 264 1_555 G ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc12 A SG CYS 263 A CYS 267 1_555 G ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc13 B SG CYS 48 B CYS 52 1_555 J ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc14 B SG CYS 51 B CYS 55 1_555 J ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc15 B SG CYS 61 B CYS 65 1_555 K ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc16 B SG CYS 64 B CYS 68 1_555 K ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc17 B SG CYS 70 B CYS 74 1_555 J ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc18 B SG CYS 74 B CYS 78 1_555 J ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc19 B NE2 HIS 82 B HIS 86 1_555 K ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc20 B SG CYS 86 B CYS 90 1_555 K ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc21 B SG CYS 205 B CYS 209 1_555 L ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc22 B SG CYS 258 B CYS 262 1_555 L ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc23 B SG CYS 260 B CYS 264 1_555 L ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc24 B SG CYS 263 B CYS 267 1_555 L ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 311 n n 
N HN1 SAH sing 312 n n 
N HN2 SAH sing 313 n n 
CA CB SAH sing 314 n n 
CA C SAH sing 315 n n 
CA HA SAH sing 316 n n 
CB CG SAH sing 317 n n 
CB HB1 SAH sing 318 n n 
CB HB2 SAH sing 319 n n 
CG SD SAH sing 320 n n 
CG HG1 SAH sing 321 n n 
CG HG2 SAH sing 322 n n 
SD C5' SAH sing 323 n n 
C O SAH doub 324 n n 
C OXT SAH sing 325 n n 
OXT HXT SAH sing 326 n n 
C5' C4' SAH sing 327 n n 
C5' "H5'1" SAH sing 328 n n 
C5' "H5'2" SAH sing 329 n n 
C4' O4' SAH sing 330 n n 
C4' C3' SAH sing 331 n n 
C4' H4' SAH sing 332 n n 
O4' C1' SAH sing 333 n n 
C3' O3' SAH sing 334 n n 
C3' C2' SAH sing 335 n n 
C3' H3' SAH sing 336 n n 
O3' HO3' SAH sing 337 n n 
C2' O2' SAH sing 338 n n 
C2' C1' SAH sing 339 n n 
C2' H2' SAH sing 340 n n 
O2' HO2' SAH sing 341 n n 
C1' N9 SAH sing 342 n n 
C1' H1' SAH sing 343 n n 
N9 C8 SAH sing 344 n y 
N9 C4 SAH sing 345 n y 
C8 N7 SAH doub 346 n y 
C8 H8 SAH sing 347 n n 
N7 C5 SAH sing 348 n y 
C5 C6 SAH sing 349 n y 
C5 C4 SAH doub 350 n y 
C6 N6 SAH sing 351 n n 
C6 N1 SAH doub 352 n y 
N6 HN61 SAH sing 353 n n 
N6 HN62 SAH sing 354 n n 
N1 C2 SAH sing 355 n y 
C2 N3 SAH doub 356 n y 
C2 H2 SAH sing 357 n n 
N3 C4 SAH sing 358 n y 
#
_atom_sites.entry_id                     6MON 
_atom_sites.fract_transf_matrix[1][1]    0.006505 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006505 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018707 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN A 1 501 507 ZN ZN . 
F 3 ZN A 1 502 508 ZN ZN . 
G 3 ZN A 1 503 509 ZN ZN . 
H 4 SAH A 1 504 504 SAH SAH . 
I 5 GOL A 1 505 505 GOL GOL . 
J 3 ZN B 1 501 507 ZN ZN . 
K 3 ZN B 1 502 508 ZN ZN . 
L 3 ZN B 1 503 509 ZN ZN . 
M 4 SAH B 1 504 504 SAH SAH . 
N 6 HOH A 1 601 601 HOH HOH . 
N 6 HOH A 2 602 608 HOH HOH . 
N 6 HOH A 3 603 606 HOH HOH . 
O 6 HOH B 1 601 605 HOH HOH . 
O 6 HOH B 2 602 606 HOH HOH . 
O 6 HOH B 3 603 604 HOH HOH . 
O 6 HOH B 4 604 609 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . H 4 171.39 444.172 -20.4 1 46.7 ? N SAH 504 A 1 
HETATM 2 C CA SAH . . . H 4 170.224 443.896 -21.235 1 56.04 ? CA SAH 504 A 1 
HETATM 3 C CB SAH . . . H 4 170.277 442.477 -21.794 1 58.06 ? CB SAH 504 A 1 
HETATM 4 C CG SAH . . . H 4 171.177 442.311 -23.014 1 55.91 ? CG SAH 504 A 1 
HETATM 5 S SD SAH . . . H 4 170.377 442.914 -24.521 1 60.91 ? SD SAH 504 A 1 
HETATM 6 C C SAH . . . H 4 168.919 444.133 -20.485 1 59.57 ? C SAH 504 A 1 
HETATM 7 O O SAH . . . H 4 167.841 443.765 -20.95 1 65.14 ? O SAH 504 A 1 
HETATM 8 O OXT SAH . . . H 4 168.914 444.706 -19.398 1 72.54 ? OXT SAH 504 A 1 
HETATM 9 C C5' SAH . . . H 4 171.817 443.935 -24.932 1 58.35 ? C5' SAH 504 A 1 
HETATM 10 C C4' SAH . . . H 4 171.883 445.249 -24.159 1 69.34 ? C4' SAH 504 A 1 
HETATM 11 O O4' SAH . . . H 4 172.619 445.078 -22.958 1 69.56 ? O4' SAH 504 A 1 
HETATM 12 C C3' SAH . . . H 4 172.566 446.348 -24.957 1 71.03 ? C3' SAH 504 A 1 
HETATM 13 O O3' SAH . . . H 4 171.621 447.283 -25.412 1 60.65 ? O3' SAH 504 A 1 
HETATM 14 C C2' SAH . . . H 4 173.499 447.027 -23.986 1 74.75 ? C2' SAH 504 A 1 
HETATM 15 O O2' SAH . . . H 4 172.945 448.262 -23.597 1 77.53 ? O2' SAH 504 A 1 
HETATM 16 C C1' SAH . . . H 4 173.55 446.122 -22.774 1 69.68 ? C1' SAH 504 A 1 
HETATM 17 N N9 SAH . . . H 4 174.895 445.538 -22.645 1 71.51 ? N9 SAH 504 A 1 
HETATM 18 C C8 SAH . . . H 4 175.28 444.305 -23.103 1 64.67 ? C8 SAH 504 A 1 
HETATM 19 N N7 SAH . . . H 4 176.585 444.128 -22.798 1 58.1 ? N7 SAH 504 A 1 
HETATM 20 C C5 SAH . . . H 4 177.038 445.231 -22.163 1 62.09 ? C5 SAH 504 A 1 
HETATM 21 C C6 SAH . . . H 4 178.282 445.565 -21.649 1 66.85 ? C6 SAH 504 A 1 
HETATM 22 N N6 SAH . . . H 4 179.292 444.705 -21.747 1 69.48 ? N6 SAH 504 A 1 
HETATM 23 N N1 SAH . . . H 4 178.461 446.788 -21.039 1 71.96 ? N1 SAH 504 A 1 
HETATM 24 C C2 SAH . . . H 4 177.403 447.67 -20.945 1 63.44 ? C2 SAH 504 A 1 
HETATM 25 N N3 SAH . . . H 4 176.167 447.33 -21.461 1 52.56 ? N3 SAH 504 A 1 
HETATM 26 C C4 SAH . . . H 4 175.986 446.128 -22.058 1 60.44 ? C4 SAH 504 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#