data_6MOR # _model_server_result.job_id INHnpyxjWhOVFrMx13zuew _model_server_result.datetime_utc '2024-11-24 15:46:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mor # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6MOR # _exptl.entry_id 6MOR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6MOR _cell.length_a 58.469 _cell.length_b 58.469 _cell.length_c 100.118 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MOR _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_465 y-1,x+1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -87.7035 50.635639 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 111 A LYS 111 1_555 B C15 RET . A RET 201 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.259 ? covale ? covale2 A NZ LYS 111 A LYS 111 1_555 B C15 RET . A RET 201 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.259 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 256 n n C1 C6 RET sing 257 n n C1 C16 RET sing 258 n n C1 C17 RET sing 259 n n C2 C3 RET sing 260 n n C2 H21 RET sing 261 n n C2 H22 RET sing 262 n n C3 C4 RET sing 263 n n C3 H31 RET sing 264 n n C3 H32 RET sing 265 n n C4 C5 RET sing 266 n n C4 H41 RET sing 267 n n C4 H42 RET sing 268 n n C5 C6 RET doub 269 n n C5 C18 RET sing 270 n n C6 C7 RET sing 271 n n C7 C8 RET doub 272 e n C7 H7 RET sing 273 n n C8 C9 RET sing 274 n n C8 H8 RET sing 275 n n C9 C10 RET doub 276 e n C9 C19 RET sing 277 n n C10 C11 RET sing 278 n n C10 H10 RET sing 279 n n C11 C12 RET doub 280 e n C11 H11 RET sing 281 n n C12 C13 RET sing 282 n n C12 H12 RET sing 283 n n C13 C14 RET doub 284 e n C13 C20 RET sing 285 n n C14 C15 RET sing 286 n n C14 H14 RET sing 287 n n C15 O1 RET doub 288 n n C15 H15 RET sing 289 n n C16 H161 RET sing 290 n n C16 H162 RET sing 291 n n C16 H163 RET sing 292 n n C17 H171 RET sing 293 n n C17 H172 RET sing 294 n n C17 H173 RET sing 295 n n C18 H181 RET sing 296 n n C18 H182 RET sing 297 n n C18 H183 RET sing 298 n n C19 H191 RET sing 299 n n C19 H192 RET sing 300 n n C19 H193 RET sing 301 n n C20 H201 RET sing 302 n n C20 H202 RET sing 303 n n C20 H203 RET sing 304 n n # _atom_sites.entry_id 6MOR _atom_sites.fract_transf_matrix[1][1] 0.017103 _atom_sites.fract_transf_matrix[1][2] 0.009874 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009988 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 201 1 RET RET . C 3 HOH A 1 301 73 HOH HOH . C 3 HOH A 2 302 21 HOH HOH . C 3 HOH A 3 303 99 HOH HOH . C 3 HOH A 4 304 61 HOH HOH . C 3 HOH A 5 305 17 HOH HOH . C 3 HOH A 6 306 105 HOH HOH . C 3 HOH A 7 307 28 HOH HOH . C 3 HOH A 8 308 84 HOH HOH . C 3 HOH A 9 309 104 HOH HOH . C 3 HOH A 10 310 54 HOH HOH . C 3 HOH A 11 311 7 HOH HOH . C 3 HOH A 12 312 27 HOH HOH . C 3 HOH A 13 313 14 HOH HOH . C 3 HOH A 14 314 19 HOH HOH . C 3 HOH A 15 315 30 HOH HOH . C 3 HOH A 16 316 9 HOH HOH . C 3 HOH A 17 317 11 HOH HOH . C 3 HOH A 18 318 56 HOH HOH . C 3 HOH A 19 319 34 HOH HOH . C 3 HOH A 20 320 5 HOH HOH . C 3 HOH A 21 321 37 HOH HOH . C 3 HOH A 22 322 78 HOH HOH . C 3 HOH A 23 323 12 HOH HOH . C 3 HOH A 24 324 64 HOH HOH . C 3 HOH A 25 325 86 HOH HOH . C 3 HOH A 26 326 97 HOH HOH . C 3 HOH A 27 327 48 HOH HOH . C 3 HOH A 28 328 49 HOH HOH . C 3 HOH A 29 329 13 HOH HOH . C 3 HOH A 30 330 51 HOH HOH . C 3 HOH A 31 331 80 HOH HOH . C 3 HOH A 32 332 36 HOH HOH . C 3 HOH A 33 333 76 HOH HOH . C 3 HOH A 34 334 40 HOH HOH . C 3 HOH A 35 335 4 HOH HOH . C 3 HOH A 36 336 77 HOH HOH . C 3 HOH A 37 337 107 HOH HOH . C 3 HOH A 38 338 33 HOH HOH . C 3 HOH A 39 339 3 HOH HOH . C 3 HOH A 40 340 81 HOH HOH . C 3 HOH A 41 341 47 HOH HOH . C 3 HOH A 42 342 46 HOH HOH . C 3 HOH A 43 343 32 HOH HOH . C 3 HOH A 44 344 85 HOH HOH . C 3 HOH A 45 345 87 HOH HOH . C 3 HOH A 46 346 20 HOH HOH . C 3 HOH A 47 347 10 HOH HOH . C 3 HOH A 48 348 82 HOH HOH . C 3 HOH A 49 349 67 HOH HOH . C 3 HOH A 50 350 75 HOH HOH . C 3 HOH A 51 351 39 HOH HOH . C 3 HOH A 52 352 31 HOH HOH . C 3 HOH A 53 353 44 HOH HOH . C 3 HOH A 54 354 23 HOH HOH . C 3 HOH A 55 355 29 HOH HOH . C 3 HOH A 56 356 53 HOH HOH . C 3 HOH A 57 357 45 HOH HOH . C 3 HOH A 58 358 8 HOH HOH . C 3 HOH A 59 359 74 HOH HOH . C 3 HOH A 60 360 25 HOH HOH . C 3 HOH A 61 361 1 HOH HOH . C 3 HOH A 62 362 57 HOH HOH . C 3 HOH A 63 363 58 HOH HOH . C 3 HOH A 64 364 2 HOH HOH . C 3 HOH A 65 365 16 HOH HOH . C 3 HOH A 66 366 110 HOH HOH . C 3 HOH A 67 367 83 HOH HOH . C 3 HOH A 68 368 35 HOH HOH . C 3 HOH A 69 369 88 HOH HOH . C 3 HOH A 70 370 22 HOH HOH . C 3 HOH A 71 371 41 HOH HOH . C 3 HOH A 72 372 71 HOH HOH . C 3 HOH A 73 373 26 HOH HOH . C 3 HOH A 74 374 55 HOH HOH . C 3 HOH A 75 375 59 HOH HOH . C 3 HOH A 76 376 68 HOH HOH . C 3 HOH A 77 377 72 HOH HOH . C 3 HOH A 78 378 93 HOH HOH . C 3 HOH A 79 379 109 HOH HOH . C 3 HOH A 80 380 79 HOH HOH . C 3 HOH A 81 381 42 HOH HOH . C 3 HOH A 82 382 91 HOH HOH . C 3 HOH A 83 383 52 HOH HOH . C 3 HOH A 84 384 94 HOH HOH . C 3 HOH A 85 385 62 HOH HOH . C 3 HOH A 86 386 15 HOH HOH . C 3 HOH A 87 387 66 HOH HOH . C 3 HOH A 88 388 90 HOH HOH . C 3 HOH A 89 389 98 HOH HOH . C 3 HOH A 90 390 63 HOH HOH . C 3 HOH A 91 391 100 HOH HOH . C 3 HOH A 92 392 24 HOH HOH . C 3 HOH A 93 393 95 HOH HOH . C 3 HOH A 94 394 18 HOH HOH . C 3 HOH A 95 395 106 HOH HOH . C 3 HOH A 96 396 60 HOH HOH . C 3 HOH A 97 397 50 HOH HOH . C 3 HOH A 98 398 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . A . B 2 -38.873 18.386 6.707 0.45 36.81 ? C1 RET 201 A 1 HETATM 2 C C1 RET . B . B 2 -39.996 20.156 8.481 0.49 28.88 ? C1 RET 201 A 1 HETATM 3 C C2 RET . A . B 2 -39.335 18.773 5.295 0.45 34.18 ? C2 RET 201 A 1 HETATM 4 C C2 RET . B . B 2 -39.419 20.999 7.327 0.49 29.08 ? C2 RET 201 A 1 HETATM 5 C C3 RET . A . B 2 -40.831 19.024 5.177 0.45 39.22 ? C3 RET 201 A 1 HETATM 6 C C3 RET . B . B 2 -39.492 20.335 5.958 0.49 33.21 ? C3 RET 201 A 1 HETATM 7 C C4 RET . A . B 2 -41.614 17.807 5.633 0.45 31.19 ? C4 RET 201 A 1 HETATM 8 C C4 RET . B . B 2 -38.863 18.953 5.985 0.49 36.46 ? C4 RET 201 A 1 HETATM 9 C C5 RET . A . B 2 -41.092 17.191 6.898 0.45 38.28 ? C5 RET 201 A 1 HETATM 10 C C5 RET . B . B 2 -39.299 18.13 7.157 0.49 37.85 ? C5 RET 201 A 1 HETATM 11 C C6 RET . A . B 2 -39.828 17.361 7.323 0.45 37.03 ? C6 RET 201 A 1 HETATM 12 C C6 RET . B . B 2 -39.569 18.693 8.345 0.49 37.19 ? C6 RET 201 A 1 HETATM 13 C C7 RET . A . B 2 -39.332 16.674 8.497 0.45 34.2 ? C7 RET 201 A 1 HETATM 14 C C7 RET . B . B 2 -39.348 17.993 9.59 0.49 38.87 ? C7 RET 201 A 1 HETATM 15 C C8 RET . A . B 2 -39.438 17.125 9.734 0.45 38.1 ? C8 RET 201 A 1 HETATM 16 C C8 RET . B . B 2 -38.356 17.171 9.847 0.49 36.87 ? C8 RET 201 A 1 HETATM 17 C C9 RET . A . B 2 -39.014 16.461 10.948 0.45 38.36 ? C9 RET 201 A 1 HETATM 18 C C9 RET . B . B 2 -38.15 16.481 11.096 0.49 35.96 ? C9 RET 201 A 1 HETATM 19 C C10 RET . A . B 2 -37.705 16.448 11.3 0.45 35.52 ? C10 RET 201 A 1 HETATM 20 C C10 RET . B . B 2 -36.928 16.515 11.674 0.49 36.1 ? C10 RET 201 A 1 HETATM 21 C C11 RET . A . B 2 -37.133 15.824 12.461 0.45 36.08 ? C11 RET 201 A 1 HETATM 22 C C11 RET . B . B 2 -36.53 15.895 12.905 0.49 34.39 ? C11 RET 201 A 1 HETATM 23 C C12 RET . A . B 2 -35.947 16.099 13.021 0.45 30.93 ? C12 RET 201 A 1 HETATM 24 C C12 RET . B . B 2 -35.298 15.968 13.393 0.49 28.81 ? C12 RET 201 A 1 HETATM 25 C C13 RET . A . B 2 -35.404 15.438 14.194 0.45 30.53 ? C13 RET 201 A 1 HETATM 26 C C13 RET . B . B 2 -34.814 15.361 14.615 0.49 29.75 ? C13 RET 201 A 1 HETATM 27 C C14 RET . A . B 2 -34.101 15.59 14.521 0.45 27.24 ? C14 RET 201 A 1 HETATM 28 C C14 RET . B . B 2 -33.51 15.506 14.942 0.49 25.86 ? C14 RET 201 A 1 HETATM 29 C C15 RET . A . B 2 -33.424 14.994 15.642 0.45 31.63 ? C15 RET 201 A 1 HETATM 30 C C15 RET . B . B 2 -32.836 14.985 16.1 0.49 31.72 ? C15 RET 201 A 1 HETATM 31 C C16 RET . A . B 2 -38.836 19.667 7.549 0.45 34.05 ? C16 RET 201 A 1 HETATM 32 C C16 RET . B . B 2 -41.523 20.258 8.475 0.49 32.7 ? C16 RET 201 A 1 HETATM 33 C C17 RET . A . B 2 -37.46 17.797 6.649 0.45 22.59 ? C17 RET 201 A 1 HETATM 34 C C17 RET . B . B 2 -39.478 20.74 9.796 0.49 30.17 ? C17 RET 201 A 1 HETATM 35 C C18 RET . A . B 2 -42.068 16.235 7.526 0.45 40.55 ? C18 RET 201 A 1 HETATM 36 C C18 RET . B . B 2 -39.752 16.751 6.76 0.49 37.73 ? C18 RET 201 A 1 HETATM 37 C C19 RET . A . B 2 -40.078 15.803 11.781 0.45 37.6 ? C19 RET 201 A 1 HETATM 38 C C19 RET . B . B 2 -39.323 15.767 11.707 0.49 40.21 ? C19 RET 201 A 1 HETATM 39 C C20 RET . A . B 2 -36.336 14.584 15.007 0.45 26.89 ? C20 RET 201 A 1 HETATM 40 C C20 RET . B . B 2 -35.789 14.58 15.456 0.49 20.86 ? C20 RET 201 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 40 #