data_6MOY # _model_server_result.job_id HjLA5B52q1n9JYd2PsVSEA _model_server_result.datetime_utc '2024-10-11 05:30:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6moy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":481}' # _entry.id 6MOY # _exptl.entry_id 6MOY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MOY _cell.length_a 75.834 _cell.length_b 100.882 _cell.length_c 171.633 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MOY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6MOY _atom_sites.fract_transf_matrix[1][1] 0.013187 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 501 501 NAG NAG . D 2 NAG B 1 481 481 NAG NAG . E 3 HOH A 1 602 602 HOH HOH . E 3 HOH A 2 603 603 HOH HOH . E 3 HOH A 3 604 604 HOH HOH . E 3 HOH A 4 605 605 HOH HOH . E 3 HOH A 5 606 606 HOH HOH . E 3 HOH A 6 607 607 HOH HOH . E 3 HOH A 7 608 608 HOH HOH . E 3 HOH A 8 610 610 HOH HOH . E 3 HOH A 9 611 611 HOH HOH . E 3 HOH A 10 612 612 HOH HOH . E 3 HOH A 11 613 613 HOH HOH . E 3 HOH A 12 614 614 HOH HOH . E 3 HOH A 13 615 615 HOH HOH . E 3 HOH A 14 616 616 HOH HOH . E 3 HOH A 15 617 617 HOH HOH . E 3 HOH A 16 619 619 HOH HOH . E 3 HOH A 17 620 620 HOH HOH . E 3 HOH A 18 621 621 HOH HOH . E 3 HOH A 19 622 622 HOH HOH . E 3 HOH A 20 625 625 HOH HOH . E 3 HOH A 21 626 626 HOH HOH . F 3 HOH B 1 581 581 HOH HOH . F 3 HOH B 2 584 584 HOH HOH . F 3 HOH B 3 586 586 HOH HOH . F 3 HOH B 4 587 587 HOH HOH . F 3 HOH B 5 591 591 HOH HOH . F 3 HOH B 6 595 595 HOH HOH . F 3 HOH B 7 596 596 HOH HOH . F 3 HOH B 8 597 597 HOH HOH . F 3 HOH B 9 598 598 HOH HOH . F 3 HOH B 10 599 599 HOH HOH . F 3 HOH B 11 602 602 HOH HOH . F 3 HOH B 12 603 603 HOH HOH . F 3 HOH B 13 606 606 HOH HOH . F 3 HOH B 14 614 614 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 2 -9.107 24.963 12.904 1 75.2 ? C1 NAG 481 B 1 HETATM 2 C C2 NAG . . . D 2 -8.883 26.152 13.832 1 73.75 ? C2 NAG 481 B 1 HETATM 3 C C3 NAG . . . D 2 -8.868 25.689 15.285 1 73.92 ? C3 NAG 481 B 1 HETATM 4 C C4 NAG . . . D 2 -10.131 24.9 15.602 1 75.12 ? C4 NAG 481 B 1 HETATM 5 C C5 NAG . . . D 2 -10.322 23.773 14.59 1 77.48 ? C5 NAG 481 B 1 HETATM 6 C C6 NAG . . . D 2 -11.631 23.038 14.766 1 78.11 ? C6 NAG 481 B 1 HETATM 7 C C7 NAG . . . D 2 -7.631 28.064 12.942 1 70.28 ? C7 NAG 481 B 1 HETATM 8 C C8 NAG . . . D 2 -6.274 28.639 12.67 1 69.91 ? C8 NAG 481 B 1 HETATM 9 N N2 NAG . . . D 2 -7.651 26.851 13.503 1 71.15 ? N2 NAG 481 B 1 HETATM 10 O O1 NAG . . . D 2 -9.162 25.405 11.588 1 82.38 ? O1 NAG 481 B 1 HETATM 11 O O3 NAG . . . D 2 -8.77 26.821 16.142 1 73.52 ? O3 NAG 481 B 1 HETATM 12 O O4 NAG . . . D 2 -10.043 24.34 16.908 1 74.59 ? O4 NAG 481 B 1 HETATM 13 O O5 NAG . . . D 2 -10.322 24.303 13.256 1 75.49 ? O5 NAG 481 B 1 HETATM 14 O O6 NAG . . . D 2 -11.79 22.015 13.794 1 78.89 ? O6 NAG 481 B 1 HETATM 15 O O7 NAG . . . D 2 -8.661 28.67 12.668 1 69.97 ? O7 NAG 481 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 15 #