data_6MP1
#
_model_server_result.job_id            0n6-USkseJhaP5bFM4t5bw 
_model_server_result.datetime_utc      '2024-12-26 23:02:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mp1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":2901}' 
#
_entry.id    6MP1 
#
_exptl.entry_id    6MP1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MP1 
_cell.length_a            52.569 
_cell.length_b            68.329 
_cell.length_c            117.787 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MP1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 49 A CYS 1025 1_555 A SG CYS 104 A CYS 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 244 A CYS 2101 1_555 A SG CYS 307 A CYS 2164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf3 A SG CYS 346 A CYS 2203 1_555 A SG CYS 402 A CYS 2259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 319 A ASN 2176 1_555 B C1 NAG . A NAG 2901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale2 A ND2 ASN 399 A ASN 2256 1_555 C C1 NAG . A NAG 2902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6MP1 
_atom_sites.fract_transf_matrix[1][1]    0.019023 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014635 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00849 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 2901 2901 NAG NAG . 
C 2 NAG A 1 2902 2902 NAG NAG . 
D 3 HOH A 1 3001 15 HOH HOH . 
D 3 HOH A 2 3002 45 HOH HOH . 
D 3 HOH A 3 3003 25 HOH HOH . 
D 3 HOH A 4 3004 12 HOH HOH . 
D 3 HOH A 5 3005 21 HOH HOH . 
D 3 HOH A 6 3006 47 HOH HOH . 
D 3 HOH A 7 3007 24 HOH HOH . 
D 3 HOH A 8 3008 13 HOH HOH . 
D 3 HOH A 9 3009 1 HOH HOH . 
D 3 HOH A 10 3010 55 HOH HOH . 
D 3 HOH A 11 3011 28 HOH HOH . 
D 3 HOH A 12 3012 51 HOH HOH . 
D 3 HOH A 13 3013 31 HOH HOH . 
D 3 HOH A 14 3014 6 HOH HOH . 
D 3 HOH A 15 3015 8 HOH HOH . 
D 3 HOH A 16 3016 36 HOH HOH . 
D 3 HOH A 17 3017 49 HOH HOH . 
D 3 HOH A 18 3018 30 HOH HOH . 
D 3 HOH A 19 3019 4 HOH HOH . 
D 3 HOH A 20 3020 58 HOH HOH . 
D 3 HOH A 21 3021 17 HOH HOH . 
D 3 HOH A 22 3022 11 HOH HOH . 
D 3 HOH A 23 3023 35 HOH HOH . 
D 3 HOH A 24 3024 57 HOH HOH . 
D 3 HOH A 25 3025 2 HOH HOH . 
D 3 HOH A 26 3026 39 HOH HOH . 
D 3 HOH A 27 3027 9 HOH HOH . 
D 3 HOH A 28 3028 10 HOH HOH . 
D 3 HOH A 29 3029 19 HOH HOH . 
D 3 HOH A 30 3030 54 HOH HOH . 
D 3 HOH A 31 3031 7 HOH HOH . 
D 3 HOH A 32 3032 41 HOH HOH . 
D 3 HOH A 33 3033 3 HOH HOH . 
D 3 HOH A 34 3034 27 HOH HOH . 
D 3 HOH A 35 3035 16 HOH HOH . 
D 3 HOH A 36 3036 37 HOH HOH . 
D 3 HOH A 37 3037 29 HOH HOH . 
D 3 HOH A 38 3038 14 HOH HOH . 
D 3 HOH A 39 3039 26 HOH HOH . 
D 3 HOH A 40 3040 22 HOH HOH . 
D 3 HOH A 41 3041 53 HOH HOH . 
D 3 HOH A 42 3042 20 HOH HOH . 
D 3 HOH A 43 3043 18 HOH HOH . 
D 3 HOH A 44 3044 33 HOH HOH . 
D 3 HOH A 45 3045 23 HOH HOH . 
D 3 HOH A 46 3046 44 HOH HOH . 
D 3 HOH A 47 3047 52 HOH HOH . 
D 3 HOH A 48 3048 46 HOH HOH . 
D 3 HOH A 49 3049 48 HOH HOH . 
D 3 HOH A 50 3050 38 HOH HOH . 
D 3 HOH A 51 3051 56 HOH HOH . 
D 3 HOH A 52 3052 32 HOH HOH . 
D 3 HOH A 53 3053 34 HOH HOH . 
D 3 HOH A 54 3054 5 HOH HOH . 
D 3 HOH A 55 3055 50 HOH HOH . 
D 3 HOH A 56 3056 42 HOH HOH . 
D 3 HOH A 57 3057 40 HOH HOH . 
D 3 HOH A 58 3058 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . B 2 -5.796 7.221 -47.936 1 74.19 ? C1 NAG 2901 A 1 
HETATM 2 C C2 NAG . . . B 2 -7.046 6.34 -48.145 1 77.11 ? C2 NAG 2901 A 1 
HETATM 3 C C3 NAG . . . B 2 -7.339 6.164 -49.639 1 82.15 ? C3 NAG 2901 A 1 
HETATM 4 C C4 NAG . . . B 2 -7.428 7.516 -50.333 1 85.54 ? C4 NAG 2901 A 1 
HETATM 5 C C5 NAG . . . B 2 -6.139 8.292 -50.1 1 85.15 ? C5 NAG 2901 A 1 
HETATM 6 C C6 NAG . . . B 2 -6.169 9.683 -50.694 1 83.62 ? C6 NAG 2901 A 1 
HETATM 7 C C7 NAG . . . B 2 -7.602 4.66 -46.436 1 76.72 ? C7 NAG 2901 A 1 
HETATM 8 C C8 NAG . . . B 2 -7.332 3.275 -45.931 1 75.29 ? C8 NAG 2901 A 1 
HETATM 9 N N2 NAG . . . B 2 -6.897 5.042 -47.507 1 75.59 ? N2 NAG 2901 A 1 
HETATM 10 O O3 NAG . . . B 2 -8.554 5.442 -49.812 1 82.88 ? O3 NAG 2901 A 1 
HETATM 11 O O4 NAG . . . B 2 -7.645 7.35 -51.73 1 85.93 ? O4 NAG 2901 A 1 
HETATM 12 O O5 NAG . . . B 2 -5.931 8.451 -48.69 1 82.55 ? O5 NAG 2901 A 1 
HETATM 13 O O6 NAG . . . B 2 -6.829 10.606 -49.837 1 83.46 ? O6 NAG 2901 A 1 
HETATM 14 O O7 NAG . . . B 2 -8.417 5.402 -45.895 1 77.18 ? O7 NAG 2901 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#