data_6MP4 # _model_server_result.job_id hffFAACUv0M4UG857ak0rA _model_server_result.datetime_utc '2024-11-22 21:13:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mp4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 6MP4 # _exptl.entry_id 6MP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MP4 _cell.length_a 79.185 _cell.length_b 79.291 _cell.length_c 234.621 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I,J,O 1 1 F,M,T 1 3 B,E,L,P,S 2 1 C,Q 3 1 G,U 3 2 D,K,R 4 1 H,N,V 4 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_544 -x,y-1/2,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 -39.6455 -117.3105 3 'crystal symmetry operation' 4_545 x+1/2,-y-1/2,-z 1 0 0 0 -1 0 0 0 -1 39.5925 -39.6455 0 4 'crystal symmetry operation' 4_445 x-1/2,-y-1/2,-z 1 0 0 0 -1 0 0 0 -1 -39.5925 -39.6455 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 M N N # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 237 n n C1 C3 MLI sing 238 n n C1 H11 MLI sing 239 n n C1 H12 MLI sing 240 n n C2 O6 MLI doub 241 n n C2 O7 MLI sing 242 n n C3 O8 MLI doub 243 n n C3 O9 MLI sing 244 n n # _atom_sites.entry_id 6MP4 _atom_sites.fract_transf_matrix[1][1] 0.012629 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 MLI A 1 201 6 MLI MLI . J 3 TCI A 1 202 2 TCI XXT . K 2 MLI D 1 201 1 MLI MLI . L 3 TCI E 1 201 1 TCI XXT . M 2 MLI F 1 201 2 MLI MLI . N 3 TCI H 1 201 3 TCI XXT . O 4 HOH A 1 301 166 HOH HOH . O 4 HOH A 2 302 84 HOH HOH . O 4 HOH A 3 303 247 HOH HOH . O 4 HOH A 4 304 33 HOH HOH . O 4 HOH A 5 305 148 HOH HOH . O 4 HOH A 6 306 196 HOH HOH . O 4 HOH A 7 307 14 HOH HOH . O 4 HOH A 8 308 8 HOH HOH . O 4 HOH A 9 309 230 HOH HOH . O 4 HOH A 10 310 110 HOH HOH . O 4 HOH A 11 311 31 HOH HOH . O 4 HOH A 12 312 23 HOH HOH . O 4 HOH A 13 313 100 HOH HOH . O 4 HOH A 14 314 270 HOH HOH . O 4 HOH A 15 315 22 HOH HOH . O 4 HOH A 16 316 44 HOH HOH . O 4 HOH A 17 317 143 HOH HOH . O 4 HOH A 18 318 113 HOH HOH . O 4 HOH A 19 319 6 HOH HOH . O 4 HOH A 20 320 134 HOH HOH . O 4 HOH A 21 321 64 HOH HOH . O 4 HOH A 22 322 186 HOH HOH . O 4 HOH A 23 323 87 HOH HOH . O 4 HOH A 24 324 293 HOH HOH . O 4 HOH A 25 325 132 HOH HOH . O 4 HOH A 26 326 82 HOH HOH . O 4 HOH A 27 327 51 HOH HOH . O 4 HOH A 28 328 140 HOH HOH . O 4 HOH A 29 329 34 HOH HOH . O 4 HOH A 30 330 32 HOH HOH . O 4 HOH A 31 331 147 HOH HOH . O 4 HOH A 32 332 277 HOH HOH . O 4 HOH A 33 333 281 HOH HOH . O 4 HOH A 34 334 276 HOH HOH . O 4 HOH A 35 335 275 HOH HOH . O 4 HOH A 36 336 235 HOH HOH . P 4 HOH B 1 201 9 HOH HOH . P 4 HOH B 2 202 214 HOH HOH . P 4 HOH B 3 203 7 HOH HOH . P 4 HOH B 4 204 239 HOH HOH . P 4 HOH B 5 205 63 HOH HOH . P 4 HOH B 6 206 35 HOH HOH . P 4 HOH B 7 207 27 HOH HOH . P 4 HOH B 8 208 99 HOH HOH . P 4 HOH B 9 209 162 HOH HOH . P 4 HOH B 10 210 74 HOH HOH . P 4 HOH B 11 211 257 HOH HOH . P 4 HOH B 12 212 218 HOH HOH . P 4 HOH B 13 213 3 HOH HOH . P 4 HOH B 14 214 124 HOH HOH . P 4 HOH B 15 215 136 HOH HOH . P 4 HOH B 16 216 89 HOH HOH . P 4 HOH B 17 217 178 HOH HOH . P 4 HOH B 18 218 153 HOH HOH . P 4 HOH B 19 219 303 HOH HOH . P 4 HOH B 20 220 36 HOH HOH . P 4 HOH B 21 221 174 HOH HOH . P 4 HOH B 22 222 163 HOH HOH . P 4 HOH B 23 223 240 HOH HOH . P 4 HOH B 24 224 197 HOH HOH . P 4 HOH B 25 225 171 HOH HOH . P 4 HOH B 26 226 79 HOH HOH . P 4 HOH B 27 227 131 HOH HOH . P 4 HOH B 28 228 105 HOH HOH . P 4 HOH B 29 229 78 HOH HOH . P 4 HOH B 30 230 188 HOH HOH . P 4 HOH B 31 231 70 HOH HOH . P 4 HOH B 32 232 278 HOH HOH . P 4 HOH B 33 233 206 HOH HOH . P 4 HOH B 34 234 48 HOH HOH . P 4 HOH B 35 235 37 HOH HOH . P 4 HOH B 36 236 66 HOH HOH . P 4 HOH B 37 237 118 HOH HOH . P 4 HOH B 38 238 234 HOH HOH . P 4 HOH B 39 239 182 HOH HOH . P 4 HOH B 40 240 20 HOH HOH . P 4 HOH B 41 241 21 HOH HOH . P 4 HOH B 42 242 194 HOH HOH . P 4 HOH B 43 243 104 HOH HOH . P 4 HOH B 44 244 250 HOH HOH . P 4 HOH B 45 245 151 HOH HOH . P 4 HOH B 46 246 127 HOH HOH . P 4 HOH B 47 247 161 HOH HOH . P 4 HOH B 48 248 91 HOH HOH . P 4 HOH B 49 249 68 HOH HOH . Q 4 HOH C 1 201 40 HOH HOH . Q 4 HOH C 2 202 122 HOH HOH . Q 4 HOH C 3 203 18 HOH HOH . Q 4 HOH C 4 204 160 HOH HOH . Q 4 HOH C 5 205 288 HOH HOH . Q 4 HOH C 6 206 284 HOH HOH . Q 4 HOH C 7 207 80 HOH HOH . Q 4 HOH C 8 208 38 HOH HOH . Q 4 HOH C 9 209 98 HOH HOH . Q 4 HOH C 10 210 26 HOH HOH . Q 4 HOH C 11 211 12 HOH HOH . Q 4 HOH C 12 212 10 HOH HOH . Q 4 HOH C 13 213 112 HOH HOH . Q 4 HOH C 14 214 217 HOH HOH . Q 4 HOH C 15 215 165 HOH HOH . Q 4 HOH C 16 216 45 HOH HOH . Q 4 HOH C 17 217 254 HOH HOH . Q 4 HOH C 18 218 103 HOH HOH . Q 4 HOH C 19 219 13 HOH HOH . Q 4 HOH C 20 220 149 HOH HOH . Q 4 HOH C 21 221 19 HOH HOH . Q 4 HOH C 22 222 128 HOH HOH . Q 4 HOH C 23 223 125 HOH HOH . Q 4 HOH C 24 224 245 HOH HOH . Q 4 HOH C 25 225 39 HOH HOH . Q 4 HOH C 26 226 58 HOH HOH . Q 4 HOH C 27 227 56 HOH HOH . Q 4 HOH C 28 228 41 HOH HOH . Q 4 HOH C 29 229 202 HOH HOH . Q 4 HOH C 30 230 157 HOH HOH . Q 4 HOH C 31 231 185 HOH HOH . Q 4 HOH C 32 232 294 HOH HOH . Q 4 HOH C 33 233 130 HOH HOH . Q 4 HOH C 34 234 298 HOH HOH . Q 4 HOH C 35 235 139 HOH HOH . Q 4 HOH C 36 236 216 HOH HOH . Q 4 HOH C 37 237 126 HOH HOH . Q 4 HOH C 38 238 193 HOH HOH . Q 4 HOH C 39 239 249 HOH HOH . Q 4 HOH C 40 240 222 HOH HOH . Q 4 HOH C 41 241 47 HOH HOH . Q 4 HOH C 42 242 255 HOH HOH . Q 4 HOH C 43 243 172 HOH HOH . Q 4 HOH C 44 244 229 HOH HOH . Q 4 HOH C 45 245 57 HOH HOH . Q 4 HOH C 46 246 226 HOH HOH . Q 4 HOH C 47 247 290 HOH HOH . Q 4 HOH C 48 248 135 HOH HOH . Q 4 HOH C 49 249 210 HOH HOH . Q 4 HOH C 50 250 111 HOH HOH . Q 4 HOH C 51 251 71 HOH HOH . Q 4 HOH C 52 252 283 HOH HOH . Q 4 HOH C 53 253 259 HOH HOH . R 4 HOH D 1 301 133 HOH HOH . R 4 HOH D 2 302 72 HOH HOH . R 4 HOH D 3 303 59 HOH HOH . R 4 HOH D 4 304 144 HOH HOH . R 4 HOH D 5 305 2 HOH HOH . R 4 HOH D 6 306 141 HOH HOH . R 4 HOH D 7 307 81 HOH HOH . R 4 HOH D 8 308 263 HOH HOH . R 4 HOH D 9 309 272 HOH HOH . R 4 HOH D 10 310 4 HOH HOH . R 4 HOH D 11 311 184 HOH HOH . R 4 HOH D 12 312 30 HOH HOH . R 4 HOH D 13 313 43 HOH HOH . R 4 HOH D 14 314 224 HOH HOH . R 4 HOH D 15 315 67 HOH HOH . R 4 HOH D 16 316 29 HOH HOH . R 4 HOH D 17 317 24 HOH HOH . R 4 HOH D 18 318 242 HOH HOH . R 4 HOH D 19 319 241 HOH HOH . R 4 HOH D 20 320 55 HOH HOH . R 4 HOH D 21 321 169 HOH HOH . R 4 HOH D 22 322 279 HOH HOH . R 4 HOH D 23 323 204 HOH HOH . R 4 HOH D 24 324 256 HOH HOH . R 4 HOH D 25 325 190 HOH HOH . R 4 HOH D 26 326 177 HOH HOH . R 4 HOH D 27 327 156 HOH HOH . R 4 HOH D 28 328 237 HOH HOH . R 4 HOH D 29 329 231 HOH HOH . R 4 HOH D 30 330 212 HOH HOH . R 4 HOH D 31 331 280 HOH HOH . R 4 HOH D 32 332 114 HOH HOH . R 4 HOH D 33 333 253 HOH HOH . R 4 HOH D 34 334 158 HOH HOH . R 4 HOH D 35 335 232 HOH HOH . R 4 HOH D 36 336 198 HOH HOH . R 4 HOH D 37 337 200 HOH HOH . R 4 HOH D 38 338 243 HOH HOH . R 4 HOH D 39 339 152 HOH HOH . S 4 HOH E 1 301 261 HOH HOH . S 4 HOH E 2 302 274 HOH HOH . S 4 HOH E 3 303 258 HOH HOH . S 4 HOH E 4 304 11 HOH HOH . S 4 HOH E 5 305 46 HOH HOH . S 4 HOH E 6 306 53 HOH HOH . S 4 HOH E 7 307 54 HOH HOH . S 4 HOH E 8 308 213 HOH HOH . S 4 HOH E 9 309 292 HOH HOH . S 4 HOH E 10 310 77 HOH HOH . S 4 HOH E 11 311 102 HOH HOH . S 4 HOH E 12 312 49 HOH HOH . S 4 HOH E 13 313 170 HOH HOH . S 4 HOH E 14 314 176 HOH HOH . S 4 HOH E 15 315 221 HOH HOH . S 4 HOH E 16 316 142 HOH HOH . S 4 HOH E 17 317 116 HOH HOH . S 4 HOH E 18 318 167 HOH HOH . S 4 HOH E 19 319 65 HOH HOH . S 4 HOH E 20 320 181 HOH HOH . S 4 HOH E 21 321 251 HOH HOH . S 4 HOH E 22 322 209 HOH HOH . S 4 HOH E 23 323 155 HOH HOH . S 4 HOH E 24 324 220 HOH HOH . S 4 HOH E 25 325 264 HOH HOH . S 4 HOH E 26 326 101 HOH HOH . S 4 HOH E 27 327 15 HOH HOH . S 4 HOH E 28 328 252 HOH HOH . S 4 HOH E 29 329 145 HOH HOH . S 4 HOH E 30 330 205 HOH HOH . S 4 HOH E 31 331 299 HOH HOH . S 4 HOH E 32 332 93 HOH HOH . S 4 HOH E 33 333 291 HOH HOH . S 4 HOH E 34 334 180 HOH HOH . S 4 HOH E 35 335 236 HOH HOH . S 4 HOH E 36 336 207 HOH HOH . S 4 HOH E 37 337 183 HOH HOH . S 4 HOH E 38 338 168 HOH HOH . S 4 HOH E 39 339 191 HOH HOH . T 4 HOH F 1 301 150 HOH HOH . T 4 HOH F 2 302 238 HOH HOH . T 4 HOH F 3 303 228 HOH HOH . T 4 HOH F 4 304 60 HOH HOH . T 4 HOH F 5 305 85 HOH HOH . T 4 HOH F 6 306 86 HOH HOH . T 4 HOH F 7 307 138 HOH HOH . T 4 HOH F 8 308 106 HOH HOH . T 4 HOH F 9 309 52 HOH HOH . T 4 HOH F 10 310 42 HOH HOH . T 4 HOH F 11 311 266 HOH HOH . T 4 HOH F 12 312 187 HOH HOH . T 4 HOH F 13 313 16 HOH HOH . T 4 HOH F 14 314 25 HOH HOH . T 4 HOH F 15 315 129 HOH HOH . T 4 HOH F 16 316 137 HOH HOH . T 4 HOH F 17 317 88 HOH HOH . T 4 HOH F 18 318 146 HOH HOH . T 4 HOH F 19 319 227 HOH HOH . T 4 HOH F 20 320 262 HOH HOH . T 4 HOH F 21 321 83 HOH HOH . T 4 HOH F 22 322 223 HOH HOH . T 4 HOH F 23 323 233 HOH HOH . T 4 HOH F 24 324 296 HOH HOH . T 4 HOH F 25 325 302 HOH HOH . T 4 HOH F 26 326 300 HOH HOH . T 4 HOH F 27 327 287 HOH HOH . T 4 HOH F 28 328 203 HOH HOH . U 4 HOH G 1 201 76 HOH HOH . U 4 HOH G 2 202 225 HOH HOH . U 4 HOH G 3 203 115 HOH HOH . U 4 HOH G 4 204 211 HOH HOH . U 4 HOH G 5 205 208 HOH HOH . U 4 HOH G 6 206 1 HOH HOH . U 4 HOH G 7 207 96 HOH HOH . U 4 HOH G 8 208 265 HOH HOH . U 4 HOH G 9 209 273 HOH HOH . U 4 HOH G 10 210 92 HOH HOH . U 4 HOH G 11 211 28 HOH HOH . U 4 HOH G 12 212 154 HOH HOH . U 4 HOH G 13 213 97 HOH HOH . U 4 HOH G 14 214 123 HOH HOH . U 4 HOH G 15 215 260 HOH HOH . U 4 HOH G 16 216 179 HOH HOH . U 4 HOH G 17 217 199 HOH HOH . U 4 HOH G 18 218 62 HOH HOH . U 4 HOH G 19 219 17 HOH HOH . U 4 HOH G 20 220 164 HOH HOH . U 4 HOH G 21 221 119 HOH HOH . U 4 HOH G 22 222 50 HOH HOH . U 4 HOH G 23 223 219 HOH HOH . U 4 HOH G 24 224 121 HOH HOH . U 4 HOH G 25 225 201 HOH HOH . U 4 HOH G 26 226 282 HOH HOH . U 4 HOH G 27 227 173 HOH HOH . U 4 HOH G 28 228 295 HOH HOH . U 4 HOH G 29 229 269 HOH HOH . U 4 HOH G 30 230 285 HOH HOH . V 4 HOH H 1 301 195 HOH HOH . V 4 HOH H 2 302 73 HOH HOH . V 4 HOH H 3 303 248 HOH HOH . V 4 HOH H 4 304 159 HOH HOH . V 4 HOH H 5 305 192 HOH HOH . V 4 HOH H 6 306 246 HOH HOH . V 4 HOH H 7 307 297 HOH HOH . V 4 HOH H 8 308 75 HOH HOH . V 4 HOH H 9 309 301 HOH HOH . V 4 HOH H 10 310 5 HOH HOH . V 4 HOH H 11 311 95 HOH HOH . V 4 HOH H 12 312 244 HOH HOH . V 4 HOH H 13 313 69 HOH HOH . V 4 HOH H 14 314 90 HOH HOH . V 4 HOH H 15 315 175 HOH HOH . V 4 HOH H 16 316 120 HOH HOH . V 4 HOH H 17 317 108 HOH HOH . V 4 HOH H 18 318 189 HOH HOH . V 4 HOH H 19 319 117 HOH HOH . V 4 HOH H 20 320 271 HOH HOH . V 4 HOH H 21 321 215 HOH HOH . V 4 HOH H 22 322 61 HOH HOH . V 4 HOH H 23 323 268 HOH HOH . V 4 HOH H 24 324 94 HOH HOH . V 4 HOH H 25 325 109 HOH HOH . V 4 HOH H 26 326 107 HOH HOH . V 4 HOH H 27 327 289 HOH HOH . V 4 HOH H 28 328 286 HOH HOH . V 4 HOH H 29 329 304 HOH HOH . V 4 HOH H 30 330 267 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . I 2 11.527 -40.765 -0.283 1 94.46 ? C1 MLI 201 A 1 HETATM 2 C C2 MLI . . . I 2 10.921 -39.426 -0.699 1 97.14 ? C2 MLI 201 A 1 HETATM 3 C C3 MLI . . . I 2 12.216 -40.612 1.071 1 92.01 ? C3 MLI 201 A 1 HETATM 4 O O6 MLI . . . I 2 11.574 -38.642 -1.435 1 97.07 ? O6 MLI 201 A 1 HETATM 5 O O7 MLI . . . I 2 9.768 -39.109 -0.306 1 98.95 ? O7 MLI 201 A 1 HETATM 6 O O8 MLI . . . I 2 12.532 -39.468 1.491 1 93.65 ? O8 MLI 201 A 1 HETATM 7 O O9 MLI . . . I 2 12.473 -41.631 1.765 1 91.22 ? O9 MLI 201 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #