data_6MP5 # _model_server_result.job_id Y8N259xde47XIuma9-aw-Q _model_server_result.datetime_utc '2024-11-24 13:51:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mp5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6MP5 # _exptl.entry_id 6MP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6MP5 _cell.length_a 119.39 _cell.length_b 119.39 _cell.length_c 551.858 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 161 A CYS 201 1_555 A SD CSS 339 A CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? disulf ? disulf2 B SG CYS 161 B CYS 201 1_555 B SD CSS 339 B CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? disulf ? disulf3 C SG CYS 161 C CYS 201 1_555 C SD CSS 339 C CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? disulf ? disulf4 D SG CYS 161 D CYS 201 1_555 D SD CSS 339 D CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? covale ? covale1 A C SER 338 A SER 378 1_555 A N CSS 339 A CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C CSS 339 A CSS 379 1_555 A N PRO 340 A PRO 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale3 B C SER 338 B SER 378 1_555 B N CSS 339 B CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C CSS 339 B CSS 379 1_555 B N PRO 340 B PRO 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 C C SER 338 C SER 378 1_555 C N CSS 339 C CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 C C CSS 339 C CSS 379 1_555 C N PRO 340 C PRO 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale7 D C SER 338 D SER 378 1_555 D N CSS 339 D CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 D C CSS 339 D CSS 379 1_555 D N PRO 340 D PRO 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 97 n n PA O2A FAD sing 98 n n PA O5B FAD sing 99 n n PA O3P FAD sing 100 n n O2A HOA2 FAD sing 101 n n O5B C5B FAD sing 102 n n C5B C4B FAD sing 103 n n C5B H51A FAD sing 104 n n C5B H52A FAD sing 105 n n C4B O4B FAD sing 106 n n C4B C3B FAD sing 107 n n C4B H4B FAD sing 108 n n O4B C1B FAD sing 109 n n C3B O3B FAD sing 110 n n C3B C2B FAD sing 111 n n C3B H3B FAD sing 112 n n O3B HO3A FAD sing 113 n n C2B O2B FAD sing 114 n n C2B C1B FAD sing 115 n n C2B H2B FAD sing 116 n n O2B HO2A FAD sing 117 n n C1B N9A FAD sing 118 n n C1B H1B FAD sing 119 n n N9A C8A FAD sing 120 n y N9A C4A FAD sing 121 n y C8A N7A FAD doub 122 n y C8A H8A FAD sing 123 n n N7A C5A FAD sing 124 n y C5A C6A FAD sing 125 n y C5A C4A FAD doub 126 n y C6A N6A FAD sing 127 n n C6A N1A FAD doub 128 n y N6A H61A FAD sing 129 n n N6A H62A FAD sing 130 n n N1A C2A FAD sing 131 n y C2A N3A FAD doub 132 n y C2A H2A FAD sing 133 n n N3A C4A FAD sing 134 n y N1 C2 FAD sing 135 n n N1 C10 FAD doub 136 n n C2 O2 FAD doub 137 n n C2 N3 FAD sing 138 n n N3 C4 FAD sing 139 n n N3 HN3 FAD sing 140 n n C4 O4 FAD doub 141 n n C4 C4X FAD sing 142 n n C4X N5 FAD doub 143 n n C4X C10 FAD sing 144 n n N5 C5X FAD sing 145 n n C5X C6 FAD doub 146 n y C5X C9A FAD sing 147 n y C6 C7 FAD sing 148 n y C6 H6 FAD sing 149 n n C7 C7M FAD sing 150 n n C7 C8 FAD doub 151 n y C7M HM71 FAD sing 152 n n C7M HM72 FAD sing 153 n n C7M HM73 FAD sing 154 n n C8 C8M FAD sing 155 n n C8 C9 FAD sing 156 n y C8M HM81 FAD sing 157 n n C8M HM82 FAD sing 158 n n C8M HM83 FAD sing 159 n n C9 C9A FAD doub 160 n y C9 H9 FAD sing 161 n n C9A N10 FAD sing 162 n n N10 C10 FAD sing 163 n n N10 C1' FAD sing 164 n n C1' C2' FAD sing 165 n n C1' "H1'1" FAD sing 166 n n C1' "H1'2" FAD sing 167 n n C2' O2' FAD sing 168 n n C2' C3' FAD sing 169 n n C2' H2' FAD sing 170 n n O2' HO2' FAD sing 171 n n C3' O3' FAD sing 172 n n C3' C4' FAD sing 173 n n C3' H3' FAD sing 174 n n O3' HO3' FAD sing 175 n n C4' O4' FAD sing 176 n n C4' C5' FAD sing 177 n n C4' H4' FAD sing 178 n n O4' HO4' FAD sing 179 n n C5' O5' FAD sing 180 n n C5' "H5'1" FAD sing 181 n n C5' "H5'2" FAD sing 182 n n O5' P FAD sing 183 n n P O1P FAD doub 184 n n P O2P FAD sing 185 n n P O3P FAD sing 186 n n O2P HOP2 FAD sing 187 n n # _atom_sites.entry_id 6MP5 _atom_sites.fract_transf_matrix[1][1] 0.008376 _atom_sites.fract_transf_matrix[1][2] 0.004836 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 501 501 FAD FAD . F 2 FAD B 1 501 501 FAD FAD . G 2 FAD C 1 501 501 FAD FAD . H 2 FAD D 1 501 501 FAD FAD . I 3 HOH A 1 601 1003 HOH HOH . I 3 HOH A 2 602 1004 HOH HOH . I 3 HOH A 3 603 1005 HOH HOH . I 3 HOH A 4 604 1002 HOH HOH . I 3 HOH A 5 605 1006 HOH HOH . I 3 HOH A 6 606 1001 HOH HOH . J 3 HOH B 1 601 1003 HOH HOH . J 3 HOH B 2 602 1005 HOH HOH . J 3 HOH B 3 603 1001 HOH HOH . J 3 HOH B 4 604 1004 HOH HOH . J 3 HOH B 5 605 1002 HOH HOH . K 3 HOH C 1 601 1002 HOH HOH . K 3 HOH C 2 602 1001 HOH HOH . K 3 HOH C 3 603 1003 HOH HOH . K 3 HOH C 4 604 1004 HOH HOH . K 3 HOH C 5 605 1005 HOH HOH . K 3 HOH C 6 606 1006 HOH HOH . L 3 HOH D 1 601 1006 HOH HOH . L 3 HOH D 2 602 1011 HOH HOH . L 3 HOH D 3 603 1007 HOH HOH . L 3 HOH D 4 604 1010 HOH HOH . L 3 HOH D 5 605 1004 HOH HOH . L 3 HOH D 6 606 1009 HOH HOH . L 3 HOH D 7 607 1003 HOH HOH . L 3 HOH D 8 608 1002 HOH HOH . L 3 HOH D 9 609 1001 HOH HOH . L 3 HOH D 10 610 1005 HOH HOH . L 3 HOH D 11 611 1008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 2 47.022 -35.345 19.843 1 62.75 ? PA FAD 501 A 1 HETATM 2 O O1A FAD . . . E 2 48.312 -34.952 20.458 1 59.54 ? O1A FAD 501 A 1 HETATM 3 O O2A FAD . . . E 2 46.602 -34.416 18.699 1 58.75 ? O2A FAD 501 A 1 HETATM 4 O O5B FAD . . . E 2 47.045 -36.87 19.393 1 62.29 ? O5B FAD 501 A 1 HETATM 5 C C5B FAD . . . E 2 46.28 -37.332 18.26 1 59.9 ? C5B FAD 501 A 1 HETATM 6 C C4B FAD . . . E 2 47.167 -38.194 17.393 1 62.84 ? C4B FAD 501 A 1 HETATM 7 O O4B FAD . . . E 2 46.377 -39.221 16.748 1 63.72 ? O4B FAD 501 A 1 HETATM 8 C C3B FAD . . . E 2 47.914 -37.447 16.285 1 59.93 ? C3B FAD 501 A 1 HETATM 9 O O3B FAD . . . E 2 49.302 -37.765 16.288 1 57.75 ? O3B FAD 501 A 1 HETATM 10 C C2B FAD . . . E 2 47.219 -37.916 15.002 1 60.66 ? C2B FAD 501 A 1 HETATM 11 O O2B FAD . . . E 2 48.125 -37.98 13.907 1 65.55 ? O2B FAD 501 A 1 HETATM 12 C C1B FAD . . . E 2 46.77 -39.318 15.398 1 62.88 ? C1B FAD 501 A 1 HETATM 13 N N9A FAD . . . E 2 45.651 -39.837 14.615 1 64.56 ? N9A FAD 501 A 1 HETATM 14 C C8A FAD . . . E 2 44.557 -39.142 14.169 1 64.4 ? C8A FAD 501 A 1 HETATM 15 N N7A FAD . . . E 2 43.71 -39.865 13.476 1 68.96 ? N7A FAD 501 A 1 HETATM 16 C C5A FAD . . . E 2 44.29 -41.125 13.46 1 71.94 ? C5A FAD 501 A 1 HETATM 17 C C6A FAD . . . E 2 43.891 -42.35 12.887 1 65.61 ? C6A FAD 501 A 1 HETATM 18 N N6A FAD . . . E 2 42.764 -42.511 12.19 1 66.39 ? N6A FAD 501 A 1 HETATM 19 N N1A FAD . . . E 2 44.7 -43.418 13.062 1 63.33 ? N1A FAD 501 A 1 HETATM 20 C C2A FAD . . . E 2 45.83 -43.263 13.758 1 64.49 ? C2A FAD 501 A 1 HETATM 21 N N3A FAD . . . E 2 46.31 -42.162 14.342 1 65.76 ? N3A FAD 501 A 1 HETATM 22 C C4A FAD . . . E 2 45.488 -41.121 14.156 1 69.95 ? C4A FAD 501 A 1 HETATM 23 N N1 FAD . . . E 2 46.777 -27.826 25.802 1 63.56 ? N1 FAD 501 A 1 HETATM 24 C C2 FAD . . . E 2 47.232 -27.398 27.015 1 60.33 ? C2 FAD 501 A 1 HETATM 25 O O2 FAD . . . E 2 47.132 -28.099 28.028 1 61.77 ? O2 FAD 501 A 1 HETATM 26 N N3 FAD . . . E 2 47.822 -26.152 27.126 1 55.44 ? N3 FAD 501 A 1 HETATM 27 C C4 FAD . . . E 2 48.014 -25.253 26.107 1 54.11 ? C4 FAD 501 A 1 HETATM 28 O O4 FAD . . . E 2 48.555 -24.171 26.33 1 55.61 ? O4 FAD 501 A 1 HETATM 29 C C4X FAD . . . E 2 47.529 -25.715 24.821 1 67.62 ? C4X FAD 501 A 1 HETATM 30 N N5 FAD . . . E 2 47.67 -24.924 23.792 1 68.27 ? N5 FAD 501 A 1 HETATM 31 C C5X FAD . . . E 2 47.207 -25.368 22.563 1 59.89 ? C5X FAD 501 A 1 HETATM 32 C C6 FAD . . . E 2 47.352 -24.538 21.454 1 61.22 ? C6 FAD 501 A 1 HETATM 33 C C7 FAD . . . E 2 46.905 -24.938 20.199 1 63.1 ? C7 FAD 501 A 1 HETATM 34 C C7M FAD . . . E 2 47.076 -24.013 19.023 1 54.13 ? C7M FAD 501 A 1 HETATM 35 C C8 FAD . . . E 2 46.301 -26.197 20.046 1 61.58 ? C8 FAD 501 A 1 HETATM 36 C C8M FAD . . . E 2 45.809 -26.661 18.703 1 59.4 ? C8M FAD 501 A 1 HETATM 37 C C9 FAD . . . E 2 46.155 -27.029 21.152 1 59.9 ? C9 FAD 501 A 1 HETATM 38 C C9A FAD . . . E 2 46.602 -26.625 22.404 1 59.35 ? C9A FAD 501 A 1 HETATM 39 N N10 FAD . . . E 2 46.481 -27.449 23.542 1 57.23 ? N10 FAD 501 A 1 HETATM 40 C C10 FAD . . . E 2 46.924 -27.021 24.769 1 62.37 ? C10 FAD 501 A 1 HETATM 41 C C1' FAD . . . E 2 45.833 -28.764 23.45 1 57.29 ? C1' FAD 501 A 1 HETATM 42 C C2' FAD . . . E 2 46.808 -29.92 23.27 1 54.65 ? C2' FAD 501 A 1 HETATM 43 O O2' FAD . . . E 2 47.641 -29.698 22.132 1 55.78 ? O2' FAD 501 A 1 HETATM 44 C C3' FAD . . . E 2 46.008 -31.206 23.061 1 55.76 ? C3' FAD 501 A 1 HETATM 45 O O3' FAD . . . E 2 44.856 -31.153 23.895 1 52.76 ? O3' FAD 501 A 1 HETATM 46 C C4' FAD . . . E 2 46.771 -32.499 23.35 1 57.11 ? C4' FAD 501 A 1 HETATM 47 O O4' FAD . . . E 2 47.718 -32.739 22.308 1 58.08 ? O4' FAD 501 A 1 HETATM 48 C C5' FAD . . . E 2 45.842 -33.685 23.504 1 54.68 ? C5' FAD 501 A 1 HETATM 49 O O5' FAD . . . E 2 46.576 -34.899 23.245 1 51.18 ? O5' FAD 501 A 1 HETATM 50 P P FAD . . . E 2 45.969 -36.044 22.351 1 54.4 ? P FAD 501 A 1 HETATM 51 O O1P FAD . . . E 2 46.947 -37.218 22.233 1 54.34 ? O1P FAD 501 A 1 HETATM 52 O O2P FAD . . . E 2 44.613 -36.428 22.819 1 53.55 ? O2P FAD 501 A 1 HETATM 53 O O3P FAD . . . E 2 45.873 -35.328 20.935 1 62.19 ? O3P FAD 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 53 #