data_6MP5
#
_model_server_result.job_id            VC0EF4GESTwtarRdb_6PnQ 
_model_server_result.datetime_utc      '2024-11-24 13:33:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mp5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    6MP5 
#
_exptl.entry_id    6MP5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6MP5 
_cell.length_a            119.39 
_cell.length_b            119.39 
_cell.length_c            551.858 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MP5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 161 A CYS 201 1_555 A SD CSS 339 A CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
disulf ? disulf2 B SG CYS 161 B CYS 201 1_555 B SD CSS 339 B CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
disulf ? disulf3 C SG CYS 161 C CYS 201 1_555 C SD CSS 339 C CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
disulf ? disulf4 D SG CYS 161 D CYS 201 1_555 D SD CSS 339 D CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
covale ? covale1 A C SER 338 A SER 378 1_555 A N CSS 339 A CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C CSS 339 A CSS 379 1_555 A N PRO 340 A PRO 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale3 B C SER 338 B SER 378 1_555 B N CSS 339 B CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 B C CSS 339 B CSS 379 1_555 B N PRO 340 B PRO 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale5 C C SER 338 C SER 378 1_555 C N CSS 339 C CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 C C CSS 339 C CSS 379 1_555 C N PRO 340 C PRO 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale7 D C SER 338 D SER 378 1_555 D N CSS 339 D CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale8 D C CSS 339 D CSS 379 1_555 D N PRO 340 D PRO 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 97 n n 
PA O2A FAD sing 98 n n 
PA O5B FAD sing 99 n n 
PA O3P FAD sing 100 n n 
O2A HOA2 FAD sing 101 n n 
O5B C5B FAD sing 102 n n 
C5B C4B FAD sing 103 n n 
C5B H51A FAD sing 104 n n 
C5B H52A FAD sing 105 n n 
C4B O4B FAD sing 106 n n 
C4B C3B FAD sing 107 n n 
C4B H4B FAD sing 108 n n 
O4B C1B FAD sing 109 n n 
C3B O3B FAD sing 110 n n 
C3B C2B FAD sing 111 n n 
C3B H3B FAD sing 112 n n 
O3B HO3A FAD sing 113 n n 
C2B O2B FAD sing 114 n n 
C2B C1B FAD sing 115 n n 
C2B H2B FAD sing 116 n n 
O2B HO2A FAD sing 117 n n 
C1B N9A FAD sing 118 n n 
C1B H1B FAD sing 119 n n 
N9A C8A FAD sing 120 n y 
N9A C4A FAD sing 121 n y 
C8A N7A FAD doub 122 n y 
C8A H8A FAD sing 123 n n 
N7A C5A FAD sing 124 n y 
C5A C6A FAD sing 125 n y 
C5A C4A FAD doub 126 n y 
C6A N6A FAD sing 127 n n 
C6A N1A FAD doub 128 n y 
N6A H61A FAD sing 129 n n 
N6A H62A FAD sing 130 n n 
N1A C2A FAD sing 131 n y 
C2A N3A FAD doub 132 n y 
C2A H2A FAD sing 133 n n 
N3A C4A FAD sing 134 n y 
N1 C2 FAD sing 135 n n 
N1 C10 FAD doub 136 n n 
C2 O2 FAD doub 137 n n 
C2 N3 FAD sing 138 n n 
N3 C4 FAD sing 139 n n 
N3 HN3 FAD sing 140 n n 
C4 O4 FAD doub 141 n n 
C4 C4X FAD sing 142 n n 
C4X N5 FAD doub 143 n n 
C4X C10 FAD sing 144 n n 
N5 C5X FAD sing 145 n n 
C5X C6 FAD doub 146 n y 
C5X C9A FAD sing 147 n y 
C6 C7 FAD sing 148 n y 
C6 H6 FAD sing 149 n n 
C7 C7M FAD sing 150 n n 
C7 C8 FAD doub 151 n y 
C7M HM71 FAD sing 152 n n 
C7M HM72 FAD sing 153 n n 
C7M HM73 FAD sing 154 n n 
C8 C8M FAD sing 155 n n 
C8 C9 FAD sing 156 n y 
C8M HM81 FAD sing 157 n n 
C8M HM82 FAD sing 158 n n 
C8M HM83 FAD sing 159 n n 
C9 C9A FAD doub 160 n y 
C9 H9 FAD sing 161 n n 
C9A N10 FAD sing 162 n n 
N10 C10 FAD sing 163 n n 
N10 C1' FAD sing 164 n n 
C1' C2' FAD sing 165 n n 
C1' "H1'1" FAD sing 166 n n 
C1' "H1'2" FAD sing 167 n n 
C2' O2' FAD sing 168 n n 
C2' C3' FAD sing 169 n n 
C2' H2' FAD sing 170 n n 
O2' HO2' FAD sing 171 n n 
C3' O3' FAD sing 172 n n 
C3' C4' FAD sing 173 n n 
C3' H3' FAD sing 174 n n 
O3' HO3' FAD sing 175 n n 
C4' O4' FAD sing 176 n n 
C4' C5' FAD sing 177 n n 
C4' H4' FAD sing 178 n n 
O4' HO4' FAD sing 179 n n 
C5' O5' FAD sing 180 n n 
C5' "H5'1" FAD sing 181 n n 
C5' "H5'2" FAD sing 182 n n 
O5' P FAD sing 183 n n 
P O1P FAD doub 184 n n 
P O2P FAD sing 185 n n 
P O3P FAD sing 186 n n 
O2P HOP2 FAD sing 187 n n 
#
_atom_sites.entry_id                     6MP5 
_atom_sites.fract_transf_matrix[1][1]    0.008376 
_atom_sites.fract_transf_matrix[1][2]    0.004836 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009672 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001812 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 501 501 FAD FAD . 
F 2 FAD B 1 501 501 FAD FAD . 
G 2 FAD C 1 501 501 FAD FAD . 
H 2 FAD D 1 501 501 FAD FAD . 
I 3 HOH A 1 601 1003 HOH HOH . 
I 3 HOH A 2 602 1004 HOH HOH . 
I 3 HOH A 3 603 1005 HOH HOH . 
I 3 HOH A 4 604 1002 HOH HOH . 
I 3 HOH A 5 605 1006 HOH HOH . 
I 3 HOH A 6 606 1001 HOH HOH . 
J 3 HOH B 1 601 1003 HOH HOH . 
J 3 HOH B 2 602 1005 HOH HOH . 
J 3 HOH B 3 603 1001 HOH HOH . 
J 3 HOH B 4 604 1004 HOH HOH . 
J 3 HOH B 5 605 1002 HOH HOH . 
K 3 HOH C 1 601 1002 HOH HOH . 
K 3 HOH C 2 602 1001 HOH HOH . 
K 3 HOH C 3 603 1003 HOH HOH . 
K 3 HOH C 4 604 1004 HOH HOH . 
K 3 HOH C 5 605 1005 HOH HOH . 
K 3 HOH C 6 606 1006 HOH HOH . 
L 3 HOH D 1 601 1006 HOH HOH . 
L 3 HOH D 2 602 1011 HOH HOH . 
L 3 HOH D 3 603 1007 HOH HOH . 
L 3 HOH D 4 604 1010 HOH HOH . 
L 3 HOH D 5 605 1004 HOH HOH . 
L 3 HOH D 6 606 1009 HOH HOH . 
L 3 HOH D 7 607 1003 HOH HOH . 
L 3 HOH D 8 608 1002 HOH HOH . 
L 3 HOH D 9 609 1001 HOH HOH . 
L 3 HOH D 10 610 1005 HOH HOH . 
L 3 HOH D 11 611 1008 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . F 2 65.298 -13.34 -23.247 1 71.82 ? PA FAD 501 B 1 
HETATM 2 O O1A FAD . . . F 2 65.92 -12.066 -23.693 1 62.62 ? O1A FAD 501 B 1 
HETATM 3 O O2A FAD . . . F 2 65.945 -13.956 -22 1 73.76 ? O2A FAD 501 B 1 
HETATM 4 O O5B FAD . . . F 2 63.735 -13.157 -23.003 1 73.71 ? O5B FAD 501 B 1 
HETATM 5 C C5B FAD . . . F 2 63.059 -13.839 -21.924 1 76.69 ? C5B FAD 501 B 1 
HETATM 6 C C4B FAD . . . F 2 62.134 -12.885 -21.21 1 72 ? C4B FAD 501 B 1 
HETATM 7 O O4B FAD . . . F 2 60.956 -13.59 -20.748 1 76.2 ? O4B FAD 501 B 1 
HETATM 8 C C3B FAD . . . F 2 62.732 -12.197 -19.983 1 76.91 ? C3B FAD 501 B 1 
HETATM 9 O O3B FAD . . . F 2 62.358 -10.825 -19.966 1 74.71 ? O3B FAD 501 B 1 
HETATM 10 C C2B FAD . . . F 2 62.11 -12.97 -18.816 1 75.27 ? C2B FAD 501 B 1 
HETATM 11 O O2B FAD . . . F 2 61.971 -12.174 -17.646 1 81.79 ? O2B FAD 501 B 1 
HETATM 12 C C1B FAD . . . F 2 60.733 -13.277 -19.39 1 75.02 ? C1B FAD 501 B 1 
HETATM 13 N N9A FAD . . . F 2 60.041 -14.39 -18.746 1 77.51 ? N9A FAD 501 B 1 
HETATM 14 C C8A FAD . . . F 2 60.588 -15.572 -18.322 1 75.78 ? C8A FAD 501 B 1 
HETATM 15 N N7A FAD . . . F 2 59.726 -16.393 -17.771 1 80.24 ? N7A FAD 501 B 1 
HETATM 16 C C5A FAD . . . F 2 58.527 -15.699 -17.83 1 79.15 ? C5A FAD 501 B 1 
HETATM 17 C C6A FAD . . . F 2 57.22 -16.019 -17.41 1 80.64 ? C6A FAD 501 B 1 
HETATM 18 N N6A FAD . . . F 2 56.89 -17.172 -16.821 1 83.47 ? N6A FAD 501 B 1 
HETATM 19 N N1A FAD . . . F 2 56.249 -15.101 -17.62 1 78.06 ? N1A FAD 501 B 1 
HETATM 20 C C2A FAD . . . F 2 56.571 -13.947 -18.208 1 73.61 ? C2A FAD 501 B 1 
HETATM 21 N N3A FAD . . . F 2 57.764 -13.537 -18.647 1 77.67 ? N3A FAD 501 B 1 
HETATM 22 C C4A FAD . . . F 2 58.706 -14.462 -18.425 1 79.87 ? C4A FAD 501 B 1 
HETATM 23 N N1 FAD . . . F 2 73.47 -13.559 -27.985 1 67.57 ? N1 FAD 501 B 1 
HETATM 24 C C2 FAD . . . F 2 74.099 -13.113 -29.111 1 69.82 ? C2 FAD 501 B 1 
HETATM 25 O O2 FAD . . . F 2 73.543 -13.138 -30.218 1 70 ? O2 FAD 501 B 1 
HETATM 26 N N3 FAD . . . F 2 75.388 -12.616 -29.023 1 64.36 ? N3 FAD 501 B 1 
HETATM 27 C C4 FAD . . . F 2 76.145 -12.515 -27.876 1 61.11 ? C4 FAD 501 B 1 
HETATM 28 O O4 FAD . . . F 2 77.284 -12.053 -27.924 1 62.73 ? O4 FAD 501 B 1 
HETATM 29 C C4X FAD . . . F 2 75.467 -12.992 -26.685 1 64.45 ? C4X FAD 501 B 1 
HETATM 30 N N5 FAD . . . F 2 76.108 -12.935 -25.548 1 61.69 ? N5 FAD 501 B 1 
HETATM 31 C C5X FAD . . . F 2 75.459 -13.391 -24.412 1 58.78 ? C5X FAD 501 B 1 
HETATM 32 C C6 FAD . . . F 2 76.127 -13.341 -23.19 1 61.3 ? C6 FAD 501 B 1 
HETATM 33 C C7 FAD . . . F 2 75.518 -13.785 -22.021 1 64.33 ? C7 FAD 501 B 1 
HETATM 34 C C7M FAD . . . F 2 76.269 -13.714 -20.717 1 55.67 ? C7M FAD 501 B 1 
HETATM 35 C C8 FAD . . . F 2 74.21 -14.293 -22.073 1 70.24 ? C8 FAD 501 B 1 
HETATM 36 C C8M FAD . . . F 2 73.519 -14.78 -20.826 1 68.72 ? C8M FAD 501 B 1 
HETATM 37 C C9 FAD . . . F 2 73.54 -14.347 -23.292 1 63.19 ? C9 FAD 501 B 1 
HETATM 38 C C9A FAD . . . F 2 74.153 -13.902 -24.456 1 60.99 ? C9A FAD 501 B 1 
HETATM 39 N N10 FAD . . . F 2 73.495 -13.932 -25.703 1 64.21 ? N10 FAD 501 B 1 
HETATM 40 C C10 FAD . . . F 2 74.128 -13.497 -26.841 1 63.87 ? C10 FAD 501 B 1 
HETATM 41 C C1' FAD . . . F 2 72.138 -14.483 -25.825 1 65.38 ? C1' FAD 501 B 1 
HETATM 42 C C2' FAD . . . F 2 71.037 -13.438 -25.711 1 59.94 ? C2' FAD 501 B 1 
HETATM 43 O O2' FAD . . . F 2 71.238 -12.636 -24.548 1 60.36 ? O2' FAD 501 B 1 
HETATM 44 C C3' FAD . . . F 2 69.692 -14.154 -25.592 1 63.1 ? C3' FAD 501 B 1 
HETATM 45 O O3' FAD . . . F 2 69.734 -15.346 -26.37 1 64.81 ? O3' FAD 501 B 1 
HETATM 46 C C4' FAD . . . F 2 68.481 -13.322 -26.015 1 64.56 ? C4' FAD 501 B 1 
HETATM 47 O O4' FAD . . . F 2 67.98 -12.625 -24.873 1 62.51 ? O4' FAD 501 B 1 
HETATM 48 C C5' FAD . . . F 2 67.398 -14.168 -26.652 1 66.07 ? C5' FAD 501 B 1 
HETATM 49 O O5' FAD . . . F 2 66.137 -13.472 -26.56 1 70.82 ? O5' FAD 501 B 1 
HETATM 50 P P FAD . . . F 2 64.877 -14.147 -25.897 1 69.8 ? P FAD 501 B 1 
HETATM 51 O O1P FAD . . . F 2 63.703 -13.165 -25.838 1 65.2 ? O1P FAD 501 B 1 
HETATM 52 O O2P FAD . . . F 2 64.578 -15.43 -26.569 1 68.41 ? O2P FAD 501 B 1 
HETATM 53 O O3P FAD . . . F 2 65.369 -14.414 -24.411 1 68.12 ? O3P FAD 501 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#