data_6MP5 # _model_server_result.job_id x0YnBUSA5msYO-YyXTIyTw _model_server_result.datetime_utc '2024-11-24 13:59:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mp5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 6MP5 # _exptl.entry_id 6MP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6MP5 _cell.length_a 119.39 _cell.length_b 119.39 _cell.length_c 551.858 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 161 A CYS 201 1_555 A SD CSS 339 A CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? disulf ? disulf2 B SG CYS 161 B CYS 201 1_555 B SD CSS 339 B CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? disulf ? disulf3 C SG CYS 161 C CYS 201 1_555 C SD CSS 339 C CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? disulf ? disulf4 D SG CYS 161 D CYS 201 1_555 D SD CSS 339 D CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? covale ? covale1 A C SER 338 A SER 378 1_555 A N CSS 339 A CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C CSS 339 A CSS 379 1_555 A N PRO 340 A PRO 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale3 B C SER 338 B SER 378 1_555 B N CSS 339 B CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C CSS 339 B CSS 379 1_555 B N PRO 340 B PRO 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 C C SER 338 C SER 378 1_555 C N CSS 339 C CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 C C CSS 339 C CSS 379 1_555 C N PRO 340 C PRO 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale7 D C SER 338 D SER 378 1_555 D N CSS 339 D CSS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 D C CSS 339 D CSS 379 1_555 D N PRO 340 D PRO 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 97 n n PA O2A FAD sing 98 n n PA O5B FAD sing 99 n n PA O3P FAD sing 100 n n O2A HOA2 FAD sing 101 n n O5B C5B FAD sing 102 n n C5B C4B FAD sing 103 n n C5B H51A FAD sing 104 n n C5B H52A FAD sing 105 n n C4B O4B FAD sing 106 n n C4B C3B FAD sing 107 n n C4B H4B FAD sing 108 n n O4B C1B FAD sing 109 n n C3B O3B FAD sing 110 n n C3B C2B FAD sing 111 n n C3B H3B FAD sing 112 n n O3B HO3A FAD sing 113 n n C2B O2B FAD sing 114 n n C2B C1B FAD sing 115 n n C2B H2B FAD sing 116 n n O2B HO2A FAD sing 117 n n C1B N9A FAD sing 118 n n C1B H1B FAD sing 119 n n N9A C8A FAD sing 120 n y N9A C4A FAD sing 121 n y C8A N7A FAD doub 122 n y C8A H8A FAD sing 123 n n N7A C5A FAD sing 124 n y C5A C6A FAD sing 125 n y C5A C4A FAD doub 126 n y C6A N6A FAD sing 127 n n C6A N1A FAD doub 128 n y N6A H61A FAD sing 129 n n N6A H62A FAD sing 130 n n N1A C2A FAD sing 131 n y C2A N3A FAD doub 132 n y C2A H2A FAD sing 133 n n N3A C4A FAD sing 134 n y N1 C2 FAD sing 135 n n N1 C10 FAD doub 136 n n C2 O2 FAD doub 137 n n C2 N3 FAD sing 138 n n N3 C4 FAD sing 139 n n N3 HN3 FAD sing 140 n n C4 O4 FAD doub 141 n n C4 C4X FAD sing 142 n n C4X N5 FAD doub 143 n n C4X C10 FAD sing 144 n n N5 C5X FAD sing 145 n n C5X C6 FAD doub 146 n y C5X C9A FAD sing 147 n y C6 C7 FAD sing 148 n y C6 H6 FAD sing 149 n n C7 C7M FAD sing 150 n n C7 C8 FAD doub 151 n y C7M HM71 FAD sing 152 n n C7M HM72 FAD sing 153 n n C7M HM73 FAD sing 154 n n C8 C8M FAD sing 155 n n C8 C9 FAD sing 156 n y C8M HM81 FAD sing 157 n n C8M HM82 FAD sing 158 n n C8M HM83 FAD sing 159 n n C9 C9A FAD doub 160 n y C9 H9 FAD sing 161 n n C9A N10 FAD sing 162 n n N10 C10 FAD sing 163 n n N10 C1' FAD sing 164 n n C1' C2' FAD sing 165 n n C1' "H1'1" FAD sing 166 n n C1' "H1'2" FAD sing 167 n n C2' O2' FAD sing 168 n n C2' C3' FAD sing 169 n n C2' H2' FAD sing 170 n n O2' HO2' FAD sing 171 n n C3' O3' FAD sing 172 n n C3' C4' FAD sing 173 n n C3' H3' FAD sing 174 n n O3' HO3' FAD sing 175 n n C4' O4' FAD sing 176 n n C4' C5' FAD sing 177 n n C4' H4' FAD sing 178 n n O4' HO4' FAD sing 179 n n C5' O5' FAD sing 180 n n C5' "H5'1" FAD sing 181 n n C5' "H5'2" FAD sing 182 n n O5' P FAD sing 183 n n P O1P FAD doub 184 n n P O2P FAD sing 185 n n P O3P FAD sing 186 n n O2P HOP2 FAD sing 187 n n # _atom_sites.entry_id 6MP5 _atom_sites.fract_transf_matrix[1][1] 0.008376 _atom_sites.fract_transf_matrix[1][2] 0.004836 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 501 501 FAD FAD . F 2 FAD B 1 501 501 FAD FAD . G 2 FAD C 1 501 501 FAD FAD . H 2 FAD D 1 501 501 FAD FAD . I 3 HOH A 1 601 1003 HOH HOH . I 3 HOH A 2 602 1004 HOH HOH . I 3 HOH A 3 603 1005 HOH HOH . I 3 HOH A 4 604 1002 HOH HOH . I 3 HOH A 5 605 1006 HOH HOH . I 3 HOH A 6 606 1001 HOH HOH . J 3 HOH B 1 601 1003 HOH HOH . J 3 HOH B 2 602 1005 HOH HOH . J 3 HOH B 3 603 1001 HOH HOH . J 3 HOH B 4 604 1004 HOH HOH . J 3 HOH B 5 605 1002 HOH HOH . K 3 HOH C 1 601 1002 HOH HOH . K 3 HOH C 2 602 1001 HOH HOH . K 3 HOH C 3 603 1003 HOH HOH . K 3 HOH C 4 604 1004 HOH HOH . K 3 HOH C 5 605 1005 HOH HOH . K 3 HOH C 6 606 1006 HOH HOH . L 3 HOH D 1 601 1006 HOH HOH . L 3 HOH D 2 602 1011 HOH HOH . L 3 HOH D 3 603 1007 HOH HOH . L 3 HOH D 4 604 1010 HOH HOH . L 3 HOH D 5 605 1004 HOH HOH . L 3 HOH D 6 606 1009 HOH HOH . L 3 HOH D 7 607 1003 HOH HOH . L 3 HOH D 8 608 1002 HOH HOH . L 3 HOH D 9 609 1001 HOH HOH . L 3 HOH D 10 610 1005 HOH HOH . L 3 HOH D 11 611 1008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . G 2 -6.084 -4.221 19.308 1 54.84 ? PA FAD 501 C 1 HETATM 2 O O1A FAD . . . G 2 -7.26 -4.713 20.067 1 46.04 ? O1A FAD 501 C 1 HETATM 3 O O2A FAD . . . G 2 -5.786 -4.969 17.999 1 69.39 ? O2A FAD 501 C 1 HETATM 4 O O5B FAD . . . G 2 -6.216 -2.7 18.979 1 56.64 ? O5B FAD 501 C 1 HETATM 5 C C5B FAD . . . G 2 -5.767 -2.166 17.716 1 58.93 ? C5B FAD 501 C 1 HETATM 6 C C4B FAD . . . G 2 -6.666 -1.025 17.322 1 51.6 ? C4B FAD 501 C 1 HETATM 7 O O4B FAD . . . G 2 -5.864 0.104 16.903 1 58.41 ? O4B FAD 501 C 1 HETATM 8 C C3B FAD . . . G 2 -7.634 -1.322 16.177 1 55 ? C3B FAD 501 C 1 HETATM 9 O O3B FAD . . . G 2 -8.94 -0.859 16.498 1 54.15 ? O3B FAD 501 C 1 HETATM 10 C C2B FAD . . . G 2 -7.025 -0.561 14.993 1 63.84 ? C2B FAD 501 C 1 HETATM 11 O O2B FAD . . . G 2 -8.013 -0.108 14.074 1 64.84 ? O2B FAD 501 C 1 HETATM 12 C C1B FAD . . . G 2 -6.394 0.627 15.708 1 64.13 ? C1B FAD 501 C 1 HETATM 13 N N9A FAD . . . G 2 -5.32 1.283 14.969 1 64.62 ? N9A FAD 501 C 1 HETATM 14 C C8A FAD . . . G 2 -4.167 0.713 14.5 1 63.06 ? C8A FAD 501 C 1 HETATM 15 N N7A FAD . . . G 2 -3.372 1.549 13.875 1 68.57 ? N7A FAD 501 C 1 HETATM 16 C C5A FAD . . . G 2 -4.051 2.757 13.938 1 68.06 ? C5A FAD 501 C 1 HETATM 17 C C6A FAD . . . G 2 -3.745 4.047 13.461 1 69.46 ? C6A FAD 501 C 1 HETATM 18 N N6A FAD . . . G 2 -2.628 4.35 12.795 1 66.1 ? N6A FAD 501 C 1 HETATM 19 N N1A FAD . . . G 2 -4.642 5.032 13.696 1 73.17 ? N1A FAD 501 C 1 HETATM 20 C C2A FAD . . . G 2 -5.761 4.738 14.363 1 70.81 ? C2A FAD 501 C 1 HETATM 21 N N3A FAD . . . G 2 -6.154 3.563 14.862 1 65.24 ? N3A FAD 501 C 1 HETATM 22 C C4A FAD . . . G 2 -5.252 2.607 14.612 1 64.97 ? C4A FAD 501 C 1 HETATM 23 N N1 FAD . . . G 2 -5.213 -12.629 23.938 1 63.75 ? N1 FAD 501 C 1 HETATM 24 C C2 FAD . . . G 2 -5.535 -13.263 25.103 1 58.24 ? C2 FAD 501 C 1 HETATM 25 O O2 FAD . . . G 2 -5.27 -12.77 26.203 1 56.08 ? O2 FAD 501 C 1 HETATM 26 N N3 FAD . . . G 2 -6.173 -14.491 25.06 1 63.25 ? N3 FAD 501 C 1 HETATM 27 C C4 FAD . . . G 2 -6.539 -15.179 23.92 1 63.86 ? C4 FAD 501 C 1 HETATM 28 O O4 FAD . . . G 2 -7.106 -16.269 24.005 1 62.98 ? O4 FAD 501 C 1 HETATM 29 C C4X FAD . . . G 2 -6.194 -14.495 22.689 1 64.64 ? C4X FAD 501 C 1 HETATM 30 N N5 FAD . . . G 2 -6.5 -15.074 21.559 1 63.86 ? N5 FAD 501 C 1 HETATM 31 C C5X FAD . . . G 2 -6.171 -14.42 20.384 1 56.78 ? C5X FAD 501 C 1 HETATM 32 C C6 FAD . . . G 2 -6.494 -15.021 19.17 1 54.25 ? C6 FAD 501 C 1 HETATM 33 C C7 FAD . . . G 2 -6.184 -14.405 17.961 1 59.72 ? C7 FAD 501 C 1 HETATM 34 C C7M FAD . . . G 2 -6.548 -15.084 16.666 1 55.31 ? C7M FAD 501 C 1 HETATM 35 C C8 FAD . . . G 2 -5.536 -13.159 17.964 1 60.78 ? C8 FAD 501 C 1 HETATM 36 C C8M FAD . . . G 2 -5.188 -12.466 16.675 1 57.74 ? C8M FAD 501 C 1 HETATM 37 C C9 FAD . . . G 2 -5.211 -12.557 19.175 1 62.48 ? C9 FAD 501 C 1 HETATM 38 C C9A FAD . . . G 2 -5.523 -13.176 20.38 1 62.41 ? C9A FAD 501 C 1 HETATM 39 N N10 FAD . . . G 2 -5.215 -12.585 21.622 1 60.63 ? N10 FAD 501 C 1 HETATM 40 C C10 FAD . . . G 2 -5.53 -13.222 22.8 1 62.53 ? C10 FAD 501 C 1 HETATM 41 C C1' FAD . . . G 2 -4.516 -11.292 21.685 1 54.39 ? C1' FAD 501 C 1 HETATM 42 C C2' FAD . . . G 2 -5.441 -10.113 21.954 1 57.33 ? C2' FAD 501 C 1 HETATM 43 O O2' FAD . . . G 2 -6.579 -10.16 21.094 1 60.58 ? O2' FAD 501 C 1 HETATM 44 C C3' FAD . . . G 2 -4.673 -8.814 21.711 1 59 ? C3' FAD 501 C 1 HETATM 45 O O3' FAD . . . G 2 -3.432 -8.874 22.406 1 56.95 ? O3' FAD 501 C 1 HETATM 46 C C4' FAD . . . G 2 -5.423 -7.561 22.162 1 58.92 ? C4' FAD 501 C 1 HETATM 47 O O4' FAD . . . G 2 -6.396 -7.203 21.178 1 52.26 ? O4' FAD 501 C 1 HETATM 48 C C5' FAD . . . G 2 -4.488 -6.406 22.45 1 53.64 ? C5' FAD 501 C 1 HETATM 49 O O5' FAD . . . G 2 -5.246 -5.18 22.464 1 56.26 ? O5' FAD 501 C 1 HETATM 50 P P FAD . . . G 2 -4.712 -3.883 21.749 1 57.25 ? P FAD 501 C 1 HETATM 51 O O1P FAD . . . G 2 -5.667 -2.703 21.958 1 56.62 ? O1P FAD 501 C 1 HETATM 52 O O2P FAD . . . G 2 -3.295 -3.643 22.153 1 51.81 ? O2P FAD 501 C 1 HETATM 53 O O3P FAD . . . G 2 -4.782 -4.291 20.211 1 62.79 ? O3P FAD 501 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #