data_6MP8
#
_model_server_result.job_id            yR6_Si3ss6YgtwElQXsRsQ 
_model_server_result.datetime_utc      '2024-11-24 23:44:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mp8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
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_entry.id    6MP8 
#
_exptl.entry_id    6MP8 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.15 
_cell.angle_gamma         90 
_cell.entry_id            6MP8 
_cell.length_a            79.957 
_cell.length_b            67.039 
_cell.length_c            62.13 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MP8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 148 A HIS 168 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc2 A OE1 GLU 150 A GLU 170 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc3 A NE2 HIS 296 A HIS 316 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc4 B O1 AKG . A AKG 401 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc5 B O5 AKG . A AKG 401 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 1 n n 
C1 O2 AKG sing 2 n n 
C1 C2 AKG sing 3 n n 
O2 HO2 AKG sing 4 n n 
C2 O5 AKG doub 5 n n 
C2 C3 AKG sing 6 n n 
C3 C4 AKG sing 7 n n 
C3 H31 AKG sing 8 n n 
C3 H32 AKG sing 9 n n 
C4 C5 AKG sing 10 n n 
C4 H41 AKG sing 11 n n 
C4 H42 AKG sing 12 n n 
C5 O3 AKG doub 13 n n 
C5 O4 AKG sing 14 n n 
O4 HO4 AKG sing 15 n n 
#
_atom_sites.entry_id                     6MP8 
_atom_sites.fract_transf_matrix[1][1]    0.012507 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0041 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014917 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016938 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AKG A 1 401 1 AKG AKG . 
C 3 FE2 A 1 402 1 FE2 FE2 . 
D 4 DAR A 1 403 1 DAR DAR . 
E 5 HOH A 1 501 20 HOH HOH . 
E 5 HOH A 2 502 27 HOH HOH . 
E 5 HOH A 3 503 60 HOH HOH . 
E 5 HOH A 4 504 14 HOH HOH . 
E 5 HOH A 5 505 1 HOH HOH . 
E 5 HOH A 6 506 64 HOH HOH . 
E 5 HOH A 7 507 12 HOH HOH . 
E 5 HOH A 8 508 58 HOH HOH . 
E 5 HOH A 9 509 55 HOH HOH . 
E 5 HOH A 10 510 3 HOH HOH . 
E 5 HOH A 11 511 19 HOH HOH . 
E 5 HOH A 12 512 61 HOH HOH . 
E 5 HOH A 13 513 56 HOH HOH . 
E 5 HOH A 14 514 10 HOH HOH . 
E 5 HOH A 15 515 36 HOH HOH . 
E 5 HOH A 16 516 17 HOH HOH . 
E 5 HOH A 17 517 24 HOH HOH . 
E 5 HOH A 18 518 49 HOH HOH . 
E 5 HOH A 19 519 32 HOH HOH . 
E 5 HOH A 20 520 5 HOH HOH . 
E 5 HOH A 21 521 7 HOH HOH . 
E 5 HOH A 22 522 68 HOH HOH . 
E 5 HOH A 23 523 40 HOH HOH . 
E 5 HOH A 24 524 30 HOH HOH . 
E 5 HOH A 25 525 21 HOH HOH . 
E 5 HOH A 26 526 26 HOH HOH . 
E 5 HOH A 27 527 18 HOH HOH . 
E 5 HOH A 28 528 9 HOH HOH . 
E 5 HOH A 29 529 62 HOH HOH . 
E 5 HOH A 30 530 13 HOH HOH . 
E 5 HOH A 31 531 4 HOH HOH . 
E 5 HOH A 32 532 31 HOH HOH . 
E 5 HOH A 33 533 70 HOH HOH . 
E 5 HOH A 34 534 65 HOH HOH . 
E 5 HOH A 35 535 57 HOH HOH . 
E 5 HOH A 36 536 15 HOH HOH . 
E 5 HOH A 37 537 6 HOH HOH . 
E 5 HOH A 38 538 48 HOH HOH . 
E 5 HOH A 39 539 63 HOH HOH . 
E 5 HOH A 40 540 25 HOH HOH . 
E 5 HOH A 41 541 69 HOH HOH . 
E 5 HOH A 42 542 8 HOH HOH . 
E 5 HOH A 43 543 35 HOH HOH . 
E 5 HOH A 44 544 29 HOH HOH . 
E 5 HOH A 45 545 72 HOH HOH . 
E 5 HOH A 46 546 53 HOH HOH . 
E 5 HOH A 47 547 16 HOH HOH . 
E 5 HOH A 48 548 22 HOH HOH . 
E 5 HOH A 49 549 2 HOH HOH . 
E 5 HOH A 50 550 54 HOH HOH . 
E 5 HOH A 51 551 11 HOH HOH . 
E 5 HOH A 52 552 73 HOH HOH . 
E 5 HOH A 53 553 23 HOH HOH . 
E 5 HOH A 54 554 67 HOH HOH . 
E 5 HOH A 55 555 37 HOH HOH . 
E 5 HOH A 56 556 39 HOH HOH . 
E 5 HOH A 57 557 33 HOH HOH . 
E 5 HOH A 58 558 66 HOH HOH . 
E 5 HOH A 59 559 44 HOH HOH . 
E 5 HOH A 60 560 28 HOH HOH . 
E 5 HOH A 61 561 71 HOH HOH . 
E 5 HOH A 62 562 43 HOH HOH . 
E 5 HOH A 63 563 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . B 2 -10.085 2.556 78.815 1 29.97 ? C1 AKG 401 A 1 
HETATM 2 O O1 AKG . . . B 2 -10.308 3.322 77.859 1 30.17 ? O1 AKG 401 A 1 
HETATM 3 O O2 AKG . . . B 2 -9.099 1.788 78.811 1 30.94 ? O2 AKG 401 A 1 
HETATM 4 C C2 AKG . . . B 2 -10.998 2.58 79.959 1 29.14 ? C2 AKG 401 A 1 
HETATM 5 O O5 AKG . . . B 2 -11.769 3.527 80.096 1 28.42 ? O5 AKG 401 A 1 
HETATM 6 C C3 AKG . . . B 2 -10.965 1.433 80.947 1 28.28 ? C3 AKG 401 A 1 
HETATM 7 C C4 AKG . . . B 2 -12.257 1.322 81.76 1 27.91 ? C4 AKG 401 A 1 
HETATM 8 C C5 AKG . . . B 2 -12.156 0.199 82.772 1 27.15 ? C5 AKG 401 A 1 
HETATM 9 O O3 AKG . . . B 2 -13.132 -0.574 82.942 1 26.62 ? O3 AKG 401 A 1 
HETATM 10 O O4 AKG . . . B 2 -11.096 0.074 83.419 1 26.77 ? O4 AKG 401 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
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