data_6MP8
#
_model_server_result.job_id            W3lIbP0Ty5hM7UMkNHkh7w 
_model_server_result.datetime_utc      '2024-11-24 23:52:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mp8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    6MP8 
#
_exptl.entry_id    6MP8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.209 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-ARGININE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.15 
_cell.angle_gamma         90 
_cell.entry_id            6MP8 
_cell.length_a            79.957 
_cell.length_b            67.039 
_cell.length_c            62.13 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MP8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 148 A HIS 168 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc2 A OE1 GLU 150 A GLU 170 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc3 A NE2 HIS 296 A HIS 316 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc4 B O1 AKG . A AKG 401 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc5 B O5 AKG . A AKG 401 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
#
_chem_comp.formula           'C6 H15 N4 O2 1' 
_chem_comp.formula_weight    175.209 
_chem_comp.id                DAR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-ARGININE 
_chem_comp.type              'd-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA DAR sing 98 n n 
N H DAR sing 99 n n 
N H2 DAR sing 100 n n 
CA CB DAR sing 101 n n 
CA C DAR sing 102 n n 
CA HA DAR sing 103 n n 
CB CG DAR sing 104 n n 
CB HB2 DAR sing 105 n n 
CB HB3 DAR sing 106 n n 
CG CD DAR sing 107 n n 
CG HG2 DAR sing 108 n n 
CG HG3 DAR sing 109 n n 
CD NE DAR sing 110 n n 
CD HD2 DAR sing 111 n n 
CD HD3 DAR sing 112 n n 
NE CZ DAR sing 113 n n 
NE HE DAR sing 114 n n 
CZ NH1 DAR sing 115 n n 
CZ NH2 DAR doub 116 n n 
NH1 HH11 DAR sing 117 n n 
NH1 HH12 DAR sing 118 n n 
NH2 HH21 DAR sing 119 n n 
NH2 HH22 DAR sing 120 n n 
C O DAR doub 121 n n 
C OXT DAR sing 122 n n 
OXT HXT DAR sing 123 n n 
#
_atom_sites.entry_id                     6MP8 
_atom_sites.fract_transf_matrix[1][1]    0.012507 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0041 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014917 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016938 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AKG A 1 401 1 AKG AKG . 
C 3 FE2 A 1 402 1 FE2 FE2 . 
D 4 DAR A 1 403 1 DAR DAR . 
E 5 HOH A 1 501 20 HOH HOH . 
E 5 HOH A 2 502 27 HOH HOH . 
E 5 HOH A 3 503 60 HOH HOH . 
E 5 HOH A 4 504 14 HOH HOH . 
E 5 HOH A 5 505 1 HOH HOH . 
E 5 HOH A 6 506 64 HOH HOH . 
E 5 HOH A 7 507 12 HOH HOH . 
E 5 HOH A 8 508 58 HOH HOH . 
E 5 HOH A 9 509 55 HOH HOH . 
E 5 HOH A 10 510 3 HOH HOH . 
E 5 HOH A 11 511 19 HOH HOH . 
E 5 HOH A 12 512 61 HOH HOH . 
E 5 HOH A 13 513 56 HOH HOH . 
E 5 HOH A 14 514 10 HOH HOH . 
E 5 HOH A 15 515 36 HOH HOH . 
E 5 HOH A 16 516 17 HOH HOH . 
E 5 HOH A 17 517 24 HOH HOH . 
E 5 HOH A 18 518 49 HOH HOH . 
E 5 HOH A 19 519 32 HOH HOH . 
E 5 HOH A 20 520 5 HOH HOH . 
E 5 HOH A 21 521 7 HOH HOH . 
E 5 HOH A 22 522 68 HOH HOH . 
E 5 HOH A 23 523 40 HOH HOH . 
E 5 HOH A 24 524 30 HOH HOH . 
E 5 HOH A 25 525 21 HOH HOH . 
E 5 HOH A 26 526 26 HOH HOH . 
E 5 HOH A 27 527 18 HOH HOH . 
E 5 HOH A 28 528 9 HOH HOH . 
E 5 HOH A 29 529 62 HOH HOH . 
E 5 HOH A 30 530 13 HOH HOH . 
E 5 HOH A 31 531 4 HOH HOH . 
E 5 HOH A 32 532 31 HOH HOH . 
E 5 HOH A 33 533 70 HOH HOH . 
E 5 HOH A 34 534 65 HOH HOH . 
E 5 HOH A 35 535 57 HOH HOH . 
E 5 HOH A 36 536 15 HOH HOH . 
E 5 HOH A 37 537 6 HOH HOH . 
E 5 HOH A 38 538 48 HOH HOH . 
E 5 HOH A 39 539 63 HOH HOH . 
E 5 HOH A 40 540 25 HOH HOH . 
E 5 HOH A 41 541 69 HOH HOH . 
E 5 HOH A 42 542 8 HOH HOH . 
E 5 HOH A 43 543 35 HOH HOH . 
E 5 HOH A 44 544 29 HOH HOH . 
E 5 HOH A 45 545 72 HOH HOH . 
E 5 HOH A 46 546 53 HOH HOH . 
E 5 HOH A 47 547 16 HOH HOH . 
E 5 HOH A 48 548 22 HOH HOH . 
E 5 HOH A 49 549 2 HOH HOH . 
E 5 HOH A 50 550 54 HOH HOH . 
E 5 HOH A 51 551 11 HOH HOH . 
E 5 HOH A 52 552 73 HOH HOH . 
E 5 HOH A 53 553 23 HOH HOH . 
E 5 HOH A 54 554 67 HOH HOH . 
E 5 HOH A 55 555 37 HOH HOH . 
E 5 HOH A 56 556 39 HOH HOH . 
E 5 HOH A 57 557 33 HOH HOH . 
E 5 HOH A 58 558 66 HOH HOH . 
E 5 HOH A 59 559 44 HOH HOH . 
E 5 HOH A 60 560 28 HOH HOH . 
E 5 HOH A 61 561 71 HOH HOH . 
E 5 HOH A 62 562 43 HOH HOH . 
E 5 HOH A 63 563 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N DAR . . . D 4 -8.913 6.172 77.223 1 37.55 ? N DAR 403 A 1 
HETATM 2 C CA DAR . . . D 4 -8.014 6.506 78.374 1 37.1 ? CA DAR 403 A 1 
HETATM 3 C CB DAR . . . D 4 -7.722 8.006 78.407 1 36.71 ? CB DAR 403 A 1 
HETATM 4 C CG DAR . . . D 4 -8.893 8.767 79.023 1 35.9 ? CG DAR 403 A 1 
HETATM 5 C CD DAR . . . D 4 -8.663 10.273 79.016 1 35.55 ? CD DAR 403 A 1 
HETATM 6 N NE DAR . . . D 4 -9.806 10.982 79.568 1 34.72 ? NE DAR 403 A 1 
HETATM 7 C CZ DAR . . . D 4 -10.079 11.082 80.877 1 33.86 ? CZ DAR 403 A 1 
HETATM 8 N NH1 DAR . . . D 4 -9.305 10.534 81.821 1 33.51 ? NH1 DAR 403 A 1 
HETATM 9 N NH2 DAR . . . D 4 -11.167 11.757 81.261 1 33.11 ? NH2 DAR 403 A 1 
HETATM 10 C C DAR . . . D 4 -6.73 5.728 78.27 1 36.96 ? C DAR 403 A 1 
HETATM 11 O O DAR . . . D 4 -6.45 5.06 77.272 1 37.3 ? O DAR 403 A 1 
HETATM 12 O OXT DAR . . . D 4 -5.922 5.739 79.194 1 35.59 ? OXT DAR 403 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#