data_6MP9 # _model_server_result.job_id PdNotC1JzrN3kYbgXXIc-Q _model_server_result.datetime_utc '2025-06-23 05:22:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6MP9 # _exptl.entry_id 6MP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.12 _cell.angle_gamma 90 _cell.entry_id 6MP9 _cell.length_a 80.676 _cell.length_b 66.94 _cell.length_c 62.856 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 147 A HIS 168 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc2 A OE1 GLU 149 A GLU 170 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc3 A NE2 HIS 295 A HIS 316 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc4 B O10 JX7 . A JX7 401 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc5 C O3 SIN . A SIN 402 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc6 C O4 SIN . A SIN 402 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id SIN _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SIN doub 312 n n C1 O2 SIN sing 313 n n C1 C2 SIN sing 314 n n O2 HO2 SIN sing 315 n n C2 C3 SIN sing 316 n n C2 H21 SIN sing 317 n n C2 H22 SIN sing 318 n n C3 C4 SIN sing 319 n n C3 H31 SIN sing 320 n n C3 H32 SIN sing 321 n n C4 O3 SIN doub 322 n n C4 O4 SIN sing 323 n n O4 HO4 SIN sing 324 n n # _atom_sites.entry_id 6MP9 _atom_sites.fract_transf_matrix[1][1] 0.012395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004296 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JX7 A 1 401 1 JX7 KAR . C 3 SIN A 1 402 1 SIN SIN . D 4 FE2 A 1 403 1 FE2 FE2 . E 5 HOH A 1 501 41 HOH HOH . E 5 HOH A 2 502 17 HOH HOH . E 5 HOH A 3 503 3 HOH HOH . E 5 HOH A 4 504 102 HOH HOH . E 5 HOH A 5 505 40 HOH HOH . E 5 HOH A 6 506 4 HOH HOH . E 5 HOH A 7 507 13 HOH HOH . E 5 HOH A 8 508 80 HOH HOH . E 5 HOH A 9 509 83 HOH HOH . E 5 HOH A 10 510 8 HOH HOH . E 5 HOH A 11 511 34 HOH HOH . E 5 HOH A 12 512 1 HOH HOH . E 5 HOH A 13 513 7 HOH HOH . E 5 HOH A 14 514 93 HOH HOH . E 5 HOH A 15 515 60 HOH HOH . E 5 HOH A 16 516 6 HOH HOH . E 5 HOH A 17 517 62 HOH HOH . E 5 HOH A 18 518 101 HOH HOH . E 5 HOH A 19 519 98 HOH HOH . E 5 HOH A 20 520 10 HOH HOH . E 5 HOH A 21 521 48 HOH HOH . E 5 HOH A 22 522 36 HOH HOH . E 5 HOH A 23 523 64 HOH HOH . E 5 HOH A 24 524 69 HOH HOH . E 5 HOH A 25 525 57 HOH HOH . E 5 HOH A 26 526 39 HOH HOH . E 5 HOH A 27 527 23 HOH HOH . E 5 HOH A 28 528 19 HOH HOH . E 5 HOH A 29 529 22 HOH HOH . E 5 HOH A 30 530 84 HOH HOH . E 5 HOH A 31 531 35 HOH HOH . E 5 HOH A 32 532 38 HOH HOH . E 5 HOH A 33 533 16 HOH HOH . E 5 HOH A 34 534 18 HOH HOH . E 5 HOH A 35 535 79 HOH HOH . E 5 HOH A 36 536 78 HOH HOH . E 5 HOH A 37 537 49 HOH HOH . E 5 HOH A 38 538 15 HOH HOH . E 5 HOH A 39 539 30 HOH HOH . E 5 HOH A 40 540 11 HOH HOH . E 5 HOH A 41 541 52 HOH HOH . E 5 HOH A 42 542 77 HOH HOH . E 5 HOH A 43 543 89 HOH HOH . E 5 HOH A 44 544 28 HOH HOH . E 5 HOH A 45 545 92 HOH HOH . E 5 HOH A 46 546 29 HOH HOH . E 5 HOH A 47 547 73 HOH HOH . E 5 HOH A 48 548 33 HOH HOH . E 5 HOH A 49 549 59 HOH HOH . E 5 HOH A 50 550 20 HOH HOH . E 5 HOH A 51 551 26 HOH HOH . E 5 HOH A 52 552 46 HOH HOH . E 5 HOH A 53 553 25 HOH HOH . E 5 HOH A 54 554 63 HOH HOH . E 5 HOH A 55 555 5 HOH HOH . E 5 HOH A 56 556 100 HOH HOH . E 5 HOH A 57 557 68 HOH HOH . E 5 HOH A 58 558 58 HOH HOH . E 5 HOH A 59 559 31 HOH HOH . E 5 HOH A 60 560 76 HOH HOH . E 5 HOH A 61 561 27 HOH HOH . E 5 HOH A 62 562 44 HOH HOH . E 5 HOH A 63 563 53 HOH HOH . E 5 HOH A 64 564 55 HOH HOH . E 5 HOH A 65 565 9 HOH HOH . E 5 HOH A 66 566 65 HOH HOH . E 5 HOH A 67 567 24 HOH HOH . E 5 HOH A 68 568 37 HOH HOH . E 5 HOH A 69 569 2 HOH HOH . E 5 HOH A 70 570 99 HOH HOH . E 5 HOH A 71 571 42 HOH HOH . E 5 HOH A 72 572 45 HOH HOH . E 5 HOH A 73 573 96 HOH HOH . E 5 HOH A 74 574 66 HOH HOH . E 5 HOH A 75 575 12 HOH HOH . E 5 HOH A 76 576 43 HOH HOH . E 5 HOH A 77 577 21 HOH HOH . E 5 HOH A 78 578 104 HOH HOH . E 5 HOH A 79 579 88 HOH HOH . E 5 HOH A 80 580 90 HOH HOH . E 5 HOH A 81 581 97 HOH HOH . E 5 HOH A 82 582 81 HOH HOH . E 5 HOH A 83 583 75 HOH HOH . E 5 HOH A 84 584 50 HOH HOH . E 5 HOH A 85 585 47 HOH HOH . E 5 HOH A 86 586 87 HOH HOH . E 5 HOH A 87 587 67 HOH HOH . E 5 HOH A 88 588 54 HOH HOH . E 5 HOH A 89 589 91 HOH HOH . E 5 HOH A 90 590 14 HOH HOH . E 5 HOH A 91 591 86 HOH HOH . E 5 HOH A 92 592 72 HOH HOH . E 5 HOH A 93 593 74 HOH HOH . E 5 HOH A 94 594 56 HOH HOH . E 5 HOH A 95 595 71 HOH HOH . E 5 HOH A 96 596 85 HOH HOH . E 5 HOH A 97 597 103 HOH HOH . E 5 HOH A 98 598 94 HOH HOH . E 5 HOH A 99 599 51 HOH HOH . E 5 HOH A 100 600 82 HOH HOH . E 5 HOH A 101 601 70 HOH HOH . E 5 HOH A 102 602 95 HOH HOH . E 5 HOH A 103 603 32 HOH HOH . E 5 HOH A 104 604 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIN . . . C 3 6.809 0.464 23.632 1 17.88 ? C1 SIN 402 A 1 HETATM 2 O O1 SIN . . . C 3 5.819 -0.287 23.833 1 17.87 ? O1 SIN 402 A 1 HETATM 3 O O2 SIN . . . C 3 7.879 0.354 24.272 1 17 ? O2 SIN 402 A 1 HETATM 4 C C2 SIN . . . C 3 6.688 1.545 22.58 1 18.18 ? C2 SIN 402 A 1 HETATM 5 C C3 SIN . . . C 3 7.986 1.711 21.786 1 18.48 ? C3 SIN 402 A 1 HETATM 6 C C4 SIN . . . C 3 7.835 2.802 20.743 1 18.86 ? C4 SIN 402 A 1 HETATM 7 O O3 SIN . . . C 3 8.247 2.584 19.578 1 19.04 ? O3 SIN 402 A 1 HETATM 8 O O4 SIN . . . C 3 7.303 3.892 21.065 1 18.14 ? O4 SIN 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 398 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #