data_6MPK
#
_model_server_result.job_id            6_cKJl8d4IT7UwQVAMhvwQ 
_model_server_result.datetime_utc      '2024-11-28 09:25:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mpk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    6MPK 
#
_exptl.entry_id    6MPK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6MPK 
_cell.length_a            58.761 
_cell.length_b            58.761 
_cell.length_c            99.174 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MPK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             111 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              111 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              201 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.264 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 269 n n 
C1 C6 RET sing 270 n n 
C1 C16 RET sing 271 n n 
C1 C17 RET sing 272 n n 
C2 C3 RET sing 273 n n 
C2 H21 RET sing 274 n n 
C2 H22 RET sing 275 n n 
C3 C4 RET sing 276 n n 
C3 H31 RET sing 277 n n 
C3 H32 RET sing 278 n n 
C4 C5 RET sing 279 n n 
C4 H41 RET sing 280 n n 
C4 H42 RET sing 281 n n 
C5 C6 RET doub 282 n n 
C5 C18 RET sing 283 n n 
C6 C7 RET sing 284 n n 
C7 C8 RET doub 285 e n 
C7 H7 RET sing 286 n n 
C8 C9 RET sing 287 n n 
C8 H8 RET sing 288 n n 
C9 C10 RET doub 289 e n 
C9 C19 RET sing 290 n n 
C10 C11 RET sing 291 n n 
C10 H10 RET sing 292 n n 
C11 C12 RET doub 293 e n 
C11 H11 RET sing 294 n n 
C12 C13 RET sing 295 n n 
C12 H12 RET sing 296 n n 
C13 C14 RET doub 297 e n 
C13 C20 RET sing 298 n n 
C14 C15 RET sing 299 n n 
C14 H14 RET sing 300 n n 
C15 O1 RET doub 301 n n 
C15 H15 RET sing 302 n n 
C16 H161 RET sing 303 n n 
C16 H162 RET sing 304 n n 
C16 H163 RET sing 305 n n 
C17 H171 RET sing 306 n n 
C17 H172 RET sing 307 n n 
C17 H173 RET sing 308 n n 
C18 H181 RET sing 309 n n 
C18 H182 RET sing 310 n n 
C18 H183 RET sing 311 n n 
C19 H191 RET sing 312 n n 
C19 H192 RET sing 313 n n 
C19 H193 RET sing 314 n n 
C20 H201 RET sing 315 n n 
C20 H202 RET sing 316 n n 
C20 H203 RET sing 317 n n 
#
_atom_sites.entry_id                     6MPK 
_atom_sites.fract_transf_matrix[1][1]    0.017018 
_atom_sites.fract_transf_matrix[1][2]    0.009825 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019651 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010083 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 201 1 RET RET . 
C 3 GOL A 1 202 3 GOL GOL . 
D 3 GOL A 1 203 4 GOL GOL . 
E 4 HOH A 1 301 49 HOH HOH . 
E 4 HOH A 2 302 39 HOH HOH . 
E 4 HOH A 3 303 128 HOH HOH . 
E 4 HOH A 4 304 125 HOH HOH . 
E 4 HOH A 5 305 79 HOH HOH . 
E 4 HOH A 6 306 89 HOH HOH . 
E 4 HOH A 7 307 130 HOH HOH . 
E 4 HOH A 8 308 117 HOH HOH . 
E 4 HOH A 9 309 38 HOH HOH . 
E 4 HOH A 10 310 76 HOH HOH . 
E 4 HOH A 11 311 119 HOH HOH . 
E 4 HOH A 12 312 120 HOH HOH . 
E 4 HOH A 13 313 112 HOH HOH . 
E 4 HOH A 14 314 104 HOH HOH . 
E 4 HOH A 15 315 57 HOH HOH . 
E 4 HOH A 16 316 46 HOH HOH . 
E 4 HOH A 17 317 25 HOH HOH . 
E 4 HOH A 18 318 7 HOH HOH . 
E 4 HOH A 19 319 10 HOH HOH . 
E 4 HOH A 20 320 30 HOH HOH . 
E 4 HOH A 21 321 20 HOH HOH . 
E 4 HOH A 22 322 14 HOH HOH . 
E 4 HOH A 23 323 11 HOH HOH . 
E 4 HOH A 24 324 133 HOH HOH . 
E 4 HOH A 25 325 37 HOH HOH . 
E 4 HOH A 26 326 134 HOH HOH . 
E 4 HOH A 27 327 92 HOH HOH . 
E 4 HOH A 28 328 45 HOH HOH . 
E 4 HOH A 29 329 19 HOH HOH . 
E 4 HOH A 30 330 2 HOH HOH . 
E 4 HOH A 31 331 127 HOH HOH . 
E 4 HOH A 32 332 78 HOH HOH . 
E 4 HOH A 33 333 122 HOH HOH . 
E 4 HOH A 34 334 95 HOH HOH . 
E 4 HOH A 35 335 5 HOH HOH . 
E 4 HOH A 36 336 116 HOH HOH . 
E 4 HOH A 37 337 98 HOH HOH . 
E 4 HOH A 38 338 26 HOH HOH . 
E 4 HOH A 39 339 136 HOH HOH . 
E 4 HOH A 40 340 53 HOH HOH . 
E 4 HOH A 41 341 36 HOH HOH . 
E 4 HOH A 42 342 59 HOH HOH . 
E 4 HOH A 43 343 42 HOH HOH . 
E 4 HOH A 44 344 131 HOH HOH . 
E 4 HOH A 45 345 22 HOH HOH . 
E 4 HOH A 46 346 43 HOH HOH . 
E 4 HOH A 47 347 82 HOH HOH . 
E 4 HOH A 48 348 21 HOH HOH . 
E 4 HOH A 49 349 129 HOH HOH . 
E 4 HOH A 50 350 13 HOH HOH . 
E 4 HOH A 51 351 60 HOH HOH . 
E 4 HOH A 52 352 12 HOH HOH . 
E 4 HOH A 53 353 44 HOH HOH . 
E 4 HOH A 54 354 9 HOH HOH . 
E 4 HOH A 55 355 58 HOH HOH . 
E 4 HOH A 56 356 3 HOH HOH . 
E 4 HOH A 57 357 33 HOH HOH . 
E 4 HOH A 58 358 24 HOH HOH . 
E 4 HOH A 59 359 50 HOH HOH . 
E 4 HOH A 60 360 52 HOH HOH . 
E 4 HOH A 61 361 16 HOH HOH . 
E 4 HOH A 62 362 123 HOH HOH . 
E 4 HOH A 63 363 47 HOH HOH . 
E 4 HOH A 64 364 114 HOH HOH . 
E 4 HOH A 65 365 8 HOH HOH . 
E 4 HOH A 66 366 41 HOH HOH . 
E 4 HOH A 67 367 18 HOH HOH . 
E 4 HOH A 68 368 31 HOH HOH . 
E 4 HOH A 69 369 84 HOH HOH . 
E 4 HOH A 70 370 54 HOH HOH . 
E 4 HOH A 71 371 106 HOH HOH . 
E 4 HOH A 72 372 4 HOH HOH . 
E 4 HOH A 73 373 56 HOH HOH . 
E 4 HOH A 74 374 87 HOH HOH . 
E 4 HOH A 75 375 23 HOH HOH . 
E 4 HOH A 76 376 6 HOH HOH . 
E 4 HOH A 77 377 68 HOH HOH . 
E 4 HOH A 78 378 28 HOH HOH . 
E 4 HOH A 79 379 103 HOH HOH . 
E 4 HOH A 80 380 27 HOH HOH . 
E 4 HOH A 81 381 17 HOH HOH . 
E 4 HOH A 82 382 108 HOH HOH . 
E 4 HOH A 83 383 48 HOH HOH . 
E 4 HOH A 84 384 113 HOH HOH . 
E 4 HOH A 85 385 86 HOH HOH . 
E 4 HOH A 86 386 132 HOH HOH . 
E 4 HOH A 87 387 110 HOH HOH . 
E 4 HOH A 88 388 40 HOH HOH . 
E 4 HOH A 89 389 121 HOH HOH . 
E 4 HOH A 90 390 15 HOH HOH . 
E 4 HOH A 91 391 32 HOH HOH . 
E 4 HOH A 92 392 88 HOH HOH . 
E 4 HOH A 93 393 55 HOH HOH . 
E 4 HOH A 94 394 61 HOH HOH . 
E 4 HOH A 95 395 135 HOH HOH . 
E 4 HOH A 96 396 107 HOH HOH . 
E 4 HOH A 97 397 67 HOH HOH . 
E 4 HOH A 98 398 29 HOH HOH . 
E 4 HOH A 99 399 126 HOH HOH . 
E 4 HOH A 100 400 74 HOH HOH . 
E 4 HOH A 101 401 101 HOH HOH . 
E 4 HOH A 102 402 124 HOH HOH . 
E 4 HOH A 103 403 81 HOH HOH . 
E 4 HOH A 104 404 83 HOH HOH . 
E 4 HOH A 105 405 80 HOH HOH . 
E 4 HOH A 106 406 64 HOH HOH . 
E 4 HOH A 107 407 100 HOH HOH . 
E 4 HOH A 108 408 109 HOH HOH . 
E 4 HOH A 109 409 63 HOH HOH . 
E 4 HOH A 110 410 35 HOH HOH . 
E 4 HOH A 111 411 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . B 2 -38.433 25.868 -7.431 1 39.37 ? C1 RET 201 A 1 
HETATM 2 C C2 RET . . . B 2 -38.92 25.305 -6.091 1 36.91 ? C2 RET 201 A 1 
HETATM 3 C C3 RET . . . B 2 -38.286 23.979 -5.69 1 38.37 ? C3 RET 201 A 1 
HETATM 4 C C4 RET . . . B 2 -36.771 23.958 -5.792 1 37.44 ? C4 RET 201 A 1 
HETATM 5 C C5 RET . . . B 2 -36.181 25.053 -6.645 1 34.12 ? C5 RET 201 A 1 
HETATM 6 C C6 RET . . . B 2 -36.913 25.763 -7.523 1 29.15 ? C6 RET 201 A 1 
HETATM 7 C C7 RET . . . B 2 -36.325 26.411 -8.68 1 35.36 ? C7 RET 201 A 1 
HETATM 8 C C8 RET . . . B 2 -35.62 25.777 -9.59 1 33.57 ? C8 RET 201 A 1 
HETATM 9 C C9 RET . . . B 2 -34.981 26.312 -10.78 1 37.01 ? C9 RET 201 A 1 
HETATM 10 C C10 RET . . . B 2 -34.131 25.508 -11.464 1 29.86 ? C10 RET 201 A 1 
HETATM 11 C C11 RET . . . B 2 -33.402 25.789 -12.671 1 33.69 ? C11 RET 201 A 1 
HETATM 12 C C12 RET . . . B 2 -32.683 24.829 -13.274 1 29.06 ? C12 RET 201 A 1 
HETATM 13 C C13 RET . . . B 2 -31.906 24.936 -14.493 1 29.02 ? C13 RET 201 A 1 
HETATM 14 C C14 RET . . . B 2 -31.184 23.866 -14.912 1 27.46 ? C14 RET 201 A 1 
HETATM 15 C C15 RET . . . B 2 -31.069 22.581 -14.276 1 31.79 ? C15 RET 201 A 1 
HETATM 16 C C16 RET . . . B 2 -38.871 27.331 -7.514 1 33.32 ? C16 RET 201 A 1 
HETATM 17 C C17 RET . . . B 2 -39.087 25.097 -8.586 1 38.14 ? C17 RET 201 A 1 
HETATM 18 C C18 RET . . . B 2 -34.683 25.122 -6.537 1 31.98 ? C18 RET 201 A 1 
HETATM 19 C C19 RET . . . B 2 -35.297 27.726 -11.182 1 38.21 ? C19 RET 201 A 1 
HETATM 20 C C20 RET . . . B 2 -31.945 26.239 -15.238 1 28.94 ? C20 RET 201 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           20 
#