data_6MQ6
#
_model_server_result.job_id            b5dyoEOMYJ7nhCSsl2LhlA 
_model_server_result.datetime_utc      '2024-11-01 15:30:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mq6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":503}' 
#
_entry.id    6MQ6 
#
_exptl.entry_id    6MQ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MQ6 
_cell.length_a            85.327 
_cell.length_b            96.407 
_cell.length_c            129.931 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MQ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,K 1 1 
B,F,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 298 A CYS 308 1_555 B SG CYS 298 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A NE2 HIS 336 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc2 C FE HEM . A HEM 501 1_555 K O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6MQ6 
_atom_sites.fract_transf_matrix[1][1]    0.01172 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010373 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007696 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 501 1 HEM HEM . 
D 3 GOL A 1 502 1 GOL GOL . 
E 3 GOL A 1 503 4 GOL GOL . 
F 4 H7P B 1 501 1 H7P BMS . 
G 3 GOL B 1 502 2 GOL GOL . 
H 3 GOL B 1 503 5 GOL GOL . 
I 3 GOL B 1 504 7 GOL GOL . 
J 3 GOL B 1 505 8 GOL GOL . 
K 5 HOH A 1 601 173 HOH HOH . 
K 5 HOH A 2 602 93 HOH HOH . 
K 5 HOH A 3 603 205 HOH HOH . 
K 5 HOH A 4 604 31 HOH HOH . 
K 5 HOH A 5 605 102 HOH HOH . 
K 5 HOH A 6 606 44 HOH HOH . 
K 5 HOH A 7 607 104 HOH HOH . 
K 5 HOH A 8 608 110 HOH HOH . 
K 5 HOH A 9 609 50 HOH HOH . 
K 5 HOH A 10 610 51 HOH HOH . 
K 5 HOH A 11 611 121 HOH HOH . 
K 5 HOH A 12 612 25 HOH HOH . 
K 5 HOH A 13 613 29 HOH HOH . 
K 5 HOH A 14 614 182 HOH HOH . 
K 5 HOH A 15 615 172 HOH HOH . 
K 5 HOH A 16 616 95 HOH HOH . 
K 5 HOH A 17 617 23 HOH HOH . 
K 5 HOH A 18 618 47 HOH HOH . 
K 5 HOH A 19 619 54 HOH HOH . 
K 5 HOH A 20 620 26 HOH HOH . 
K 5 HOH A 21 621 56 HOH HOH . 
K 5 HOH A 22 622 45 HOH HOH . 
K 5 HOH A 23 623 207 HOH HOH . 
K 5 HOH A 24 624 158 HOH HOH . 
K 5 HOH A 25 625 24 HOH HOH . 
K 5 HOH A 26 626 83 HOH HOH . 
K 5 HOH A 27 627 107 HOH HOH . 
K 5 HOH A 28 628 49 HOH HOH . 
K 5 HOH A 29 629 52 HOH HOH . 
K 5 HOH A 30 630 163 HOH HOH . 
K 5 HOH A 31 631 204 HOH HOH . 
K 5 HOH A 32 632 48 HOH HOH . 
K 5 HOH A 33 633 27 HOH HOH . 
K 5 HOH A 34 634 197 HOH HOH . 
K 5 HOH A 35 635 206 HOH HOH . 
K 5 HOH A 36 636 46 HOH HOH . 
K 5 HOH A 37 637 85 HOH HOH . 
K 5 HOH A 38 638 96 HOH HOH . 
K 5 HOH A 39 639 135 HOH HOH . 
K 5 HOH A 40 640 53 HOH HOH . 
K 5 HOH A 41 641 68 HOH HOH . 
K 5 HOH A 42 642 187 HOH HOH . 
K 5 HOH A 43 643 146 HOH HOH . 
K 5 HOH A 44 644 181 HOH HOH . 
K 5 HOH A 45 645 75 HOH HOH . 
K 5 HOH A 46 646 55 HOH HOH . 
K 5 HOH A 47 647 43 HOH HOH . 
K 5 HOH A 48 648 63 HOH HOH . 
K 5 HOH A 49 649 108 HOH HOH . 
K 5 HOH A 50 650 97 HOH HOH . 
K 5 HOH A 51 651 103 HOH HOH . 
K 5 HOH A 52 652 186 HOH HOH . 
K 5 HOH A 53 653 118 HOH HOH . 
K 5 HOH A 54 654 127 HOH HOH . 
K 5 HOH A 55 655 136 HOH HOH . 
K 5 HOH A 56 656 20 HOH HOH . 
K 5 HOH A 57 657 111 HOH HOH . 
K 5 HOH A 58 658 21 HOH HOH . 
K 5 HOH A 59 659 99 HOH HOH . 
K 5 HOH A 60 660 106 HOH HOH . 
K 5 HOH A 61 661 84 HOH HOH . 
K 5 HOH A 62 662 92 HOH HOH . 
K 5 HOH A 63 663 171 HOH HOH . 
K 5 HOH A 64 664 109 HOH HOH . 
K 5 HOH A 65 665 126 HOH HOH . 
K 5 HOH A 66 666 208 HOH HOH . 
K 5 HOH A 67 667 91 HOH HOH . 
K 5 HOH A 68 668 22 HOH HOH . 
K 5 HOH A 69 669 125 HOH HOH . 
K 5 HOH A 70 670 134 HOH HOH . 
L 5 HOH B 1 601 35 HOH HOH . 
L 5 HOH B 2 602 59 HOH HOH . 
L 5 HOH B 3 603 36 HOH HOH . 
L 5 HOH B 4 604 199 HOH HOH . 
L 5 HOH B 5 605 60 HOH HOH . 
L 5 HOH B 6 606 200 HOH HOH . 
L 5 HOH B 7 607 201 HOH HOH . 
L 5 HOH B 8 608 2 HOH HOH . 
L 5 HOH B 9 609 76 HOH HOH . 
L 5 HOH B 10 610 112 HOH HOH . 
L 5 HOH B 11 611 167 HOH HOH . 
L 5 HOH B 12 612 203 HOH HOH . 
L 5 HOH B 13 613 177 HOH HOH . 
L 5 HOH B 14 614 33 HOH HOH . 
L 5 HOH B 15 615 202 HOH HOH . 
L 5 HOH B 16 616 3 HOH HOH . 
L 5 HOH B 17 617 69 HOH HOH . 
L 5 HOH B 18 618 88 HOH HOH . 
L 5 HOH B 19 619 131 HOH HOH . 
L 5 HOH B 20 620 40 HOH HOH . 
L 5 HOH B 21 621 4 HOH HOH . 
L 5 HOH B 22 622 194 HOH HOH . 
L 5 HOH B 23 623 198 HOH HOH . 
L 5 HOH B 24 624 64 HOH HOH . 
L 5 HOH B 25 625 16 HOH HOH . 
L 5 HOH B 26 626 38 HOH HOH . 
L 5 HOH B 27 627 11 HOH HOH . 
L 5 HOH B 28 628 155 HOH HOH . 
L 5 HOH B 29 629 130 HOH HOH . 
L 5 HOH B 30 630 73 HOH HOH . 
L 5 HOH B 31 631 195 HOH HOH . 
L 5 HOH B 32 632 74 HOH HOH . 
L 5 HOH B 33 633 15 HOH HOH . 
L 5 HOH B 34 634 114 HOH HOH . 
L 5 HOH B 35 635 132 HOH HOH . 
L 5 HOH B 36 636 124 HOH HOH . 
L 5 HOH B 37 637 152 HOH HOH . 
L 5 HOH B 38 638 113 HOH HOH . 
L 5 HOH B 39 639 66 HOH HOH . 
L 5 HOH B 40 640 37 HOH HOH . 
L 5 HOH B 41 641 161 HOH HOH . 
L 5 HOH B 42 642 9 HOH HOH . 
L 5 HOH B 43 643 129 HOH HOH . 
L 5 HOH B 44 644 65 HOH HOH . 
L 5 HOH B 45 645 13 HOH HOH . 
L 5 HOH B 46 646 196 HOH HOH . 
L 5 HOH B 47 647 123 HOH HOH . 
L 5 HOH B 48 648 14 HOH HOH . 
L 5 HOH B 49 649 133 HOH HOH . 
L 5 HOH B 50 650 159 HOH HOH . 
L 5 HOH B 51 651 78 HOH HOH . 
L 5 HOH B 52 652 89 HOH HOH . 
L 5 HOH B 53 653 170 HOH HOH . 
L 5 HOH B 54 654 176 HOH HOH . 
L 5 HOH B 55 655 34 HOH HOH . 
L 5 HOH B 56 656 6 HOH HOH . 
L 5 HOH B 57 657 70 HOH HOH . 
L 5 HOH B 58 658 18 HOH HOH . 
L 5 HOH B 59 659 57 HOH HOH . 
L 5 HOH B 60 660 86 HOH HOH . 
L 5 HOH B 61 661 58 HOH HOH . 
L 5 HOH B 62 662 87 HOH HOH . 
L 5 HOH B 63 663 39 HOH HOH . 
L 5 HOH B 64 664 188 HOH HOH . 
L 5 HOH B 65 665 90 HOH HOH . 
L 5 HOH B 66 666 178 HOH HOH . 
L 5 HOH B 67 667 116 HOH HOH . 
L 5 HOH B 68 668 157 HOH HOH . 
L 5 HOH B 69 669 19 HOH HOH . 
L 5 HOH B 70 670 10 HOH HOH . 
L 5 HOH B 71 671 61 HOH HOH . 
L 5 HOH B 72 672 120 HOH HOH . 
L 5 HOH B 73 673 128 HOH HOH . 
L 5 HOH B 74 674 8 HOH HOH . 
L 5 HOH B 75 675 80 HOH HOH . 
L 5 HOH B 76 676 142 HOH HOH . 
L 5 HOH B 77 677 119 HOH HOH . 
L 5 HOH B 78 678 139 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 3 64.654 21.481 7.593 1 119.36 ? C1 GOL 503 B 1 
HETATM 2 O O1 GOL . . . H 3 64.725 21.651 9.014 1 114.08 ? O1 GOL 503 B 1 
HETATM 3 C C2 GOL . . . H 3 64.437 20.013 7.232 1 120.78 ? C2 GOL 503 B 1 
HETATM 4 O O2 GOL . . . H 3 63.162 19.863 6.595 1 123.96 ? O2 GOL 503 B 1 
HETATM 5 C C3 GOL . . . H 3 64.507 19.13 8.475 1 116.18 ? C3 GOL 503 B 1 
HETATM 6 O O3 GOL . . . H 3 65.824 19.171 9.04 1 106.35 ? O3 GOL 503 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#