data_6MQB
#
_model_server_result.job_id            w2QWiajhLcDbaF5cRquUBw 
_model_server_result.datetime_utc      '2025-07-31 06:21:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mqb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    6MQB 
#
_exptl.entry_id    6MQB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MQB 
_cell.length_a            41.02 
_cell.length_b            91.86 
_cell.length_c            151.68 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MQB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 75.84 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 38 A SER 63 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc2 A OG1 THR 64 A THR 89 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc3 B O1G GNP . A GNP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc4 B O1B GNP . A GNP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc5 C MG MG . A MG 402 1_555 D O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc6 C MG MG . A MG 402 1_555 D O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     6MQB 
_atom_sites.fract_transf_matrix[1][1]    0.024378 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010886 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006593 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GNP A 1 401 1 GNP GNP . 
C 3 MG A 1 402 2 MG MG . 
D 4 HOH A 1 501 100 HOH HOH . 
D 4 HOH A 2 502 75 HOH HOH . 
D 4 HOH A 3 503 26 HOH HOH . 
D 4 HOH A 4 504 14 HOH HOH . 
D 4 HOH A 5 505 29 HOH HOH . 
D 4 HOH A 6 506 60 HOH HOH . 
D 4 HOH A 7 507 89 HOH HOH . 
D 4 HOH A 8 508 82 HOH HOH . 
D 4 HOH A 9 509 11 HOH HOH . 
D 4 HOH A 10 510 15 HOH HOH . 
D 4 HOH A 11 511 97 HOH HOH . 
D 4 HOH A 12 512 21 HOH HOH . 
D 4 HOH A 13 513 87 HOH HOH . 
D 4 HOH A 14 514 1 HOH HOH . 
D 4 HOH A 15 515 93 HOH HOH . 
D 4 HOH A 16 516 57 HOH HOH . 
D 4 HOH A 17 517 94 HOH HOH . 
D 4 HOH A 18 518 22 HOH HOH . 
D 4 HOH A 19 519 95 HOH HOH . 
D 4 HOH A 20 520 19 HOH HOH . 
D 4 HOH A 21 521 2 HOH HOH . 
D 4 HOH A 22 522 80 HOH HOH . 
D 4 HOH A 23 523 44 HOH HOH . 
D 4 HOH A 24 524 40 HOH HOH . 
D 4 HOH A 25 525 59 HOH HOH . 
D 4 HOH A 26 526 25 HOH HOH . 
D 4 HOH A 27 527 33 HOH HOH . 
D 4 HOH A 28 528 51 HOH HOH . 
D 4 HOH A 29 529 39 HOH HOH . 
D 4 HOH A 30 530 35 HOH HOH . 
D 4 HOH A 31 531 5 HOH HOH . 
D 4 HOH A 32 532 6 HOH HOH . 
D 4 HOH A 33 533 46 HOH HOH . 
D 4 HOH A 34 534 71 HOH HOH . 
D 4 HOH A 35 535 7 HOH HOH . 
D 4 HOH A 36 536 16 HOH HOH . 
D 4 HOH A 37 537 49 HOH HOH . 
D 4 HOH A 38 538 61 HOH HOH . 
D 4 HOH A 39 539 47 HOH HOH . 
D 4 HOH A 40 540 18 HOH HOH . 
D 4 HOH A 41 541 67 HOH HOH . 
D 4 HOH A 42 542 74 HOH HOH . 
D 4 HOH A 43 543 62 HOH HOH . 
D 4 HOH A 44 544 83 HOH HOH . 
D 4 HOH A 45 545 43 HOH HOH . 
D 4 HOH A 46 546 4 HOH HOH . 
D 4 HOH A 47 547 38 HOH HOH . 
D 4 HOH A 48 548 55 HOH HOH . 
D 4 HOH A 49 549 24 HOH HOH . 
D 4 HOH A 50 550 10 HOH HOH . 
D 4 HOH A 51 551 98 HOH HOH . 
D 4 HOH A 52 552 8 HOH HOH . 
D 4 HOH A 53 553 23 HOH HOH . 
D 4 HOH A 54 554 30 HOH HOH . 
D 4 HOH A 55 555 41 HOH HOH . 
D 4 HOH A 56 556 13 HOH HOH . 
D 4 HOH A 57 557 32 HOH HOH . 
D 4 HOH A 58 558 28 HOH HOH . 
D 4 HOH A 59 559 36 HOH HOH . 
D 4 HOH A 60 560 17 HOH HOH . 
D 4 HOH A 61 561 86 HOH HOH . 
D 4 HOH A 62 562 9 HOH HOH . 
D 4 HOH A 63 563 96 HOH HOH . 
D 4 HOH A 64 564 37 HOH HOH . 
D 4 HOH A 65 565 3 HOH HOH . 
D 4 HOH A 66 566 53 HOH HOH . 
D 4 HOH A 67 567 12 HOH HOH . 
D 4 HOH A 68 568 52 HOH HOH . 
D 4 HOH A 69 569 27 HOH HOH . 
D 4 HOH A 70 570 72 HOH HOH . 
D 4 HOH A 71 571 78 HOH HOH . 
D 4 HOH A 72 572 56 HOH HOH . 
D 4 HOH A 73 573 76 HOH HOH . 
D 4 HOH A 74 574 54 HOH HOH . 
D 4 HOH A 75 575 34 HOH HOH . 
D 4 HOH A 76 576 77 HOH HOH . 
D 4 HOH A 77 577 69 HOH HOH . 
D 4 HOH A 78 578 63 HOH HOH . 
D 4 HOH A 79 579 79 HOH HOH . 
D 4 HOH A 80 580 84 HOH HOH . 
D 4 HOH A 81 581 50 HOH HOH . 
D 4 HOH A 82 582 58 HOH HOH . 
D 4 HOH A 83 583 99 HOH HOH . 
D 4 HOH A 84 584 31 HOH HOH . 
D 4 HOH A 85 585 85 HOH HOH . 
D 4 HOH A 86 586 48 HOH HOH . 
D 4 HOH A 87 587 91 HOH HOH . 
D 4 HOH A 88 588 68 HOH HOH . 
D 4 HOH A 89 589 66 HOH HOH . 
D 4 HOH A 90 590 20 HOH HOH . 
D 4 HOH A 91 591 92 HOH HOH . 
D 4 HOH A 92 592 70 HOH HOH . 
D 4 HOH A 93 593 73 HOH HOH . 
D 4 HOH A 94 594 45 HOH HOH . 
D 4 HOH A 95 595 65 HOH HOH . 
D 4 HOH A 96 596 42 HOH HOH . 
D 4 HOH A 97 597 90 HOH HOH . 
D 4 HOH A 98 598 64 HOH HOH . 
D 4 HOH A 99 599 81 HOH HOH . 
D 4 HOH A 100 600 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . B 2 6.794 -20.445 28.899 1 32.14 ? PG GNP 401 A 1 
HETATM 2 O O1G GNP . . . B 2 7.818 -20.739 27.83 1 32.11 ? O1G GNP 401 A 1 
HETATM 3 O O2G GNP . . . B 2 7.279 -19.576 30.033 1 27.83 ? O2G GNP 401 A 1 
HETATM 4 O O3G GNP . . . B 2 5.514 -19.8 28.423 1 30.75 ? O3G GNP 401 A 1 
HETATM 5 N N3B GNP . . . B 2 6.398 -21.861 29.488 1 29.68 ? N3B GNP 401 A 1 
HETATM 6 P PB GNP . . . B 2 5.559 -22.914 28.655 1 26.04 ? PB GNP 401 A 1 
HETATM 7 O O1B GNP . . . B 2 6.146 -23.108 27.312 1 27.03 ? O1B GNP 401 A 1 
HETATM 8 O O2B GNP . . . B 2 4.146 -22.476 28.736 1 26.24 ? O2B GNP 401 A 1 
HETATM 9 O O3A GNP . . . B 2 5.653 -24.244 29.395 1 29.03 ? O3A GNP 401 A 1 
HETATM 10 P PA GNP . . . B 2 6.556 -25.379 28.926 1 29.7 ? PA GNP 401 A 1 
HETATM 11 O O1A GNP . . . B 2 6.007 -26.006 27.704 1 29 ? O1A GNP 401 A 1 
HETATM 12 O O2A GNP . . . B 2 7.937 -24.85 28.862 1 33.26 ? O2A GNP 401 A 1 
HETATM 13 O O5' GNP . . . B 2 6.544 -26.492 30.051 1 30.7 ? O5' GNP 401 A 1 
HETATM 14 C C5' GNP . . . B 2 6.69 -26.15 31.429 1 24.43 ? C5' GNP 401 A 1 
HETATM 15 C C4' GNP . . . B 2 6.86 -27.386 32.302 1 27.21 ? C4' GNP 401 A 1 
HETATM 16 O O4' GNP . . . B 2 5.612 -28.123 32.373 1 26.59 ? O4' GNP 401 A 1 
HETATM 17 C C3' GNP . . . B 2 7.906 -28.391 31.829 1 30.32 ? C3' GNP 401 A 1 
HETATM 18 O O3' GNP . . . B 2 8.545 -28.978 32.953 1 29.85 ? O3' GNP 401 A 1 
HETATM 19 C C2' GNP . . . B 2 7.07 -29.417 31.072 1 31.62 ? C2' GNP 401 A 1 
HETATM 20 O O2' GNP . . . B 2 7.677 -30.693 31.032 1 34.52 ? O2' GNP 401 A 1 
HETATM 21 C C1' GNP . . . B 2 5.812 -29.45 31.93 1 26.24 ? C1' GNP 401 A 1 
HETATM 22 N N9 GNP . . . B 2 4.611 -29.861 31.21 1 26.18 ? N9 GNP 401 A 1 
HETATM 23 C C8 GNP . . . B 2 4.298 -29.61 29.896 1 28.15 ? C8 GNP 401 A 1 
HETATM 24 N N7 GNP . . . B 2 3.144 -30.102 29.537 1 28.83 ? N7 GNP 401 A 1 
HETATM 25 C C5 GNP . . . B 2 2.661 -30.714 30.687 1 29.21 ? C5 GNP 401 A 1 
HETATM 26 C C6 GNP . . . B 2 1.454 -31.416 30.912 1 29.69 ? C6 GNP 401 A 1 
HETATM 27 O O6 GNP . . . B 2 0.539 -31.643 30.108 1 28.77 ? O6 GNP 401 A 1 
HETATM 28 N N1 GNP . . . B 2 1.36 -31.876 32.224 1 29.5 ? N1 GNP 401 A 1 
HETATM 29 C C2 GNP . . . B 2 2.313 -31.681 33.197 1 27.88 ? C2 GNP 401 A 1 
HETATM 30 N N2 GNP . . . B 2 2.048 -32.198 34.406 1 24.46 ? N2 GNP 401 A 1 
HETATM 31 N N3 GNP . . . B 2 3.448 -31.024 32.999 1 30.29 ? N3 GNP 401 A 1 
HETATM 32 C C4 GNP . . . B 2 3.553 -30.572 31.726 1 28.26 ? C4 GNP 401 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#