data_6MQX # _model_server_result.job_id 5qikopP4cMe4kUg_AcqaEg _model_server_result.datetime_utc '2024-11-24 14:07:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mqx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6MQX # _exptl.entry_id 6MQX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6MQX _cell.length_a 58.501 _cell.length_b 58.501 _cell.length_c 99.982 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MQX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_345 -x-2,-x+y-1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 -87.7515 -50.663352 33.327333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 111 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 111 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 203 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.259 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 269 n n C1 C6 RET sing 270 n n C1 C16 RET sing 271 n n C1 C17 RET sing 272 n n C2 C3 RET sing 273 n n C2 H21 RET sing 274 n n C2 H22 RET sing 275 n n C3 C4 RET sing 276 n n C3 H31 RET sing 277 n n C3 H32 RET sing 278 n n C4 C5 RET sing 279 n n C4 H41 RET sing 280 n n C4 H42 RET sing 281 n n C5 C6 RET doub 282 n n C5 C18 RET sing 283 n n C6 C7 RET sing 284 n n C7 C8 RET doub 285 e n C7 H7 RET sing 286 n n C8 C9 RET sing 287 n n C8 H8 RET sing 288 n n C9 C10 RET doub 289 e n C9 C19 RET sing 290 n n C10 C11 RET sing 291 n n C10 H10 RET sing 292 n n C11 C12 RET doub 293 e n C11 H11 RET sing 294 n n C12 C13 RET sing 295 n n C12 H12 RET sing 296 n n C13 C14 RET doub 297 e n C13 C20 RET sing 298 n n C14 C15 RET sing 299 n n C14 H14 RET sing 300 n n C15 O1 RET doub 301 n n C15 H15 RET sing 302 n n C16 H161 RET sing 303 n n C16 H162 RET sing 304 n n C16 H163 RET sing 305 n n C17 H171 RET sing 306 n n C17 H172 RET sing 307 n n C17 H173 RET sing 308 n n C18 H181 RET sing 309 n n C18 H182 RET sing 310 n n C18 H183 RET sing 311 n n C19 H191 RET sing 312 n n C19 H192 RET sing 313 n n C19 H193 RET sing 314 n n C20 H201 RET sing 315 n n C20 H202 RET sing 316 n n C20 H203 RET sing 317 n n # _atom_sites.entry_id 6MQX _atom_sites.fract_transf_matrix[1][1] 0.017094 _atom_sites.fract_transf_matrix[1][2] 0.009869 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 4 GOL GOL . C 2 GOL A 1 202 5 GOL GOL . D 3 RET A 1 203 1 RET RET . E 4 HOH A 1 301 59 HOH HOH . E 4 HOH A 2 302 69 HOH HOH . E 4 HOH A 3 303 3 HOH HOH . E 4 HOH A 4 304 41 HOH HOH . E 4 HOH A 5 305 28 HOH HOH . E 4 HOH A 6 306 37 HOH HOH . E 4 HOH A 7 307 45 HOH HOH . E 4 HOH A 8 308 51 HOH HOH . E 4 HOH A 9 309 70 HOH HOH . E 4 HOH A 10 310 44 HOH HOH . E 4 HOH A 11 311 64 HOH HOH . E 4 HOH A 12 312 7 HOH HOH . E 4 HOH A 13 313 14 HOH HOH . E 4 HOH A 14 314 23 HOH HOH . E 4 HOH A 15 315 49 HOH HOH . E 4 HOH A 16 316 11 HOH HOH . E 4 HOH A 17 317 5 HOH HOH . E 4 HOH A 18 318 12 HOH HOH . E 4 HOH A 19 319 42 HOH HOH . E 4 HOH A 20 320 4 HOH HOH . E 4 HOH A 21 321 58 HOH HOH . E 4 HOH A 22 322 46 HOH HOH . E 4 HOH A 23 323 8 HOH HOH . E 4 HOH A 24 324 17 HOH HOH . E 4 HOH A 25 325 32 HOH HOH . E 4 HOH A 26 326 18 HOH HOH . E 4 HOH A 27 327 16 HOH HOH . E 4 HOH A 28 328 62 HOH HOH . E 4 HOH A 29 329 9 HOH HOH . E 4 HOH A 30 330 10 HOH HOH . E 4 HOH A 31 331 24 HOH HOH . E 4 HOH A 32 332 6 HOH HOH . E 4 HOH A 33 333 54 HOH HOH . E 4 HOH A 34 334 50 HOH HOH . E 4 HOH A 35 335 67 HOH HOH . E 4 HOH A 36 336 13 HOH HOH . E 4 HOH A 37 337 21 HOH HOH . E 4 HOH A 38 338 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . D 3 -39.465 -19.104 9.988 1 65.33 ? C1 RET 203 A 1 HETATM 2 C C2 RET . . . D 3 -39.643 -20.054 11.174 1 61.39 ? C2 RET 203 A 1 HETATM 3 C C3 RET . . . D 3 -41.089 -20.443 11.418 1 66.08 ? C3 RET 203 A 1 HETATM 4 C C4 RET . . . D 3 -41.9 -19.2 11.721 1 66.07 ? C4 RET 203 A 1 HETATM 5 C C5 RET . . . D 3 -41.638 -18.069 10.771 1 65.1 ? C5 RET 203 A 1 HETATM 6 C C6 RET . . . D 3 -40.598 -18.06 9.921 1 66.59 ? C6 RET 203 A 1 HETATM 7 C C7 RET . . . D 3 -40.616 -17.145 8.793 1 69.78 ? C7 RET 203 A 1 HETATM 8 C C8 RET . . . D 3 -39.739 -16.956 7.855 1 68.58 ? C8 RET 203 A 1 HETATM 9 C C9 RET . . . D 3 -39.778 -16.042 6.75 1 73.81 ? C9 RET 203 A 1 HETATM 10 C C10 RET . . . D 3 -38.724 -16.044 5.904 1 68.91 ? C10 RET 203 A 1 HETATM 11 C C11 RET . . . D 3 -38.497 -15.235 4.744 1 70.96 ? C11 RET 203 A 1 HETATM 12 C C12 RET . . . D 3 -37.356 -15.392 4.082 1 64.85 ? C12 RET 203 A 1 HETATM 13 C C13 RET . . . D 3 -36.876 -14.696 2.912 1 61.33 ? C13 RET 203 A 1 HETATM 14 C C14 RET . . . D 3 -35.564 -14.815 2.605 1 52.5 ? C14 RET 203 A 1 HETATM 15 C C15 RET . . . D 3 -34.842 -14.23 1.511 1 60.05 ? C15 RET 203 A 1 HETATM 16 C C16 RET . . . D 3 -39.434 -19.98 8.728 1 67.49 ? C16 RET 203 A 1 HETATM 17 C C17 RET . . . D 3 -38.098 -18.426 10.164 1 65.7 ? C17 RET 203 A 1 HETATM 18 C C18 RET . . . D 3 -42.662 -16.97 10.855 1 67.1 ? C18 RET 203 A 1 HETATM 19 C C19 RET . . . D 3 -40.977 -15.147 6.602 1 63.88 ? C19 RET 203 A 1 HETATM 20 C C20 RET . . . D 3 -37.853 -13.876 2.115 1 65.91 ? C20 RET 203 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #