data_6MQY # _model_server_result.job_id oiyGywpb6mTOcZ_5ICKliw _model_server_result.datetime_utc '2024-11-22 06:22:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mqy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6MQY # _exptl.entry_id 6MQY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6MQY _cell.length_a 58.343 _cell.length_b 58.343 _cell.length_c 99.865 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MQY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_465 y-1,x+1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -87.5145 50.52652 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 111 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 111 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 204 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.25 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6MQY _atom_sites.fract_transf_matrix[1][1] 0.01714 _atom_sites.fract_transf_matrix[1][2] 0.009896 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL GOL . C 2 GOL A 1 202 2 GOL GOL . D 2 GOL A 1 203 4 GOL GOL . E 3 RET A 1 204 1 RET RET . F 4 HOH A 1 301 13 HOH HOH . F 4 HOH A 2 302 6 HOH HOH . F 4 HOH A 3 303 2 HOH HOH . F 4 HOH A 4 304 44 HOH HOH . F 4 HOH A 5 305 8 HOH HOH . F 4 HOH A 6 306 4 HOH HOH . F 4 HOH A 7 307 36 HOH HOH . F 4 HOH A 8 308 18 HOH HOH . F 4 HOH A 9 309 7 HOH HOH . F 4 HOH A 10 310 19 HOH HOH . F 4 HOH A 11 311 43 HOH HOH . F 4 HOH A 12 312 45 HOH HOH . F 4 HOH A 13 313 3 HOH HOH . F 4 HOH A 14 314 24 HOH HOH . F 4 HOH A 15 315 32 HOH HOH . F 4 HOH A 16 316 22 HOH HOH . F 4 HOH A 17 317 21 HOH HOH . F 4 HOH A 18 318 26 HOH HOH . F 4 HOH A 19 319 28 HOH HOH . F 4 HOH A 20 320 30 HOH HOH . F 4 HOH A 21 321 5 HOH HOH . F 4 HOH A 22 322 17 HOH HOH . F 4 HOH A 23 323 10 HOH HOH . F 4 HOH A 24 324 12 HOH HOH . F 4 HOH A 25 325 9 HOH HOH . F 4 HOH A 26 326 25 HOH HOH . F 4 HOH A 27 327 33 HOH HOH . F 4 HOH A 28 328 31 HOH HOH . F 4 HOH A 29 329 27 HOH HOH . F 4 HOH A 30 330 15 HOH HOH . F 4 HOH A 31 331 35 HOH HOH . F 4 HOH A 32 332 41 HOH HOH . F 4 HOH A 33 333 16 HOH HOH . F 4 HOH A 34 334 11 HOH HOH . F 4 HOH A 35 335 23 HOH HOH . F 4 HOH A 36 336 34 HOH HOH . F 4 HOH A 37 337 39 HOH HOH . F 4 HOH A 38 338 40 HOH HOH . F 4 HOH A 39 339 42 HOH HOH . F 4 HOH A 40 340 47 HOH HOH . F 4 HOH A 41 341 46 HOH HOH . F 4 HOH A 42 342 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -26.759 13.808 -28.021 1 39.8 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 -25.635 14.174 -28.808 1 42.23 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 -27.979 13.79 -28.94 1 37.74 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 -28.199 15.079 -29.448 1 37.04 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 -29.262 13.304 -28.271 1 50.35 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 -30.341 13.525 -29.169 1 38.85 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #