data_6MQY # _model_server_result.job_id XDo9qUaOqOAIXeMOIC-JRg _model_server_result.datetime_utc '2024-10-24 18:19:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mqy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 6MQY # _exptl.entry_id 6MQY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6MQY _cell.length_a 58.343 _cell.length_b 58.343 _cell.length_c 99.865 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MQY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_465 y-1,x+1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -87.5145 50.52652 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 111 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 111 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 204 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.25 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 269 n n C1 C6 RET sing 270 n n C1 C16 RET sing 271 n n C1 C17 RET sing 272 n n C2 C3 RET sing 273 n n C2 H21 RET sing 274 n n C2 H22 RET sing 275 n n C3 C4 RET sing 276 n n C3 H31 RET sing 277 n n C3 H32 RET sing 278 n n C4 C5 RET sing 279 n n C4 H41 RET sing 280 n n C4 H42 RET sing 281 n n C5 C6 RET doub 282 n n C5 C18 RET sing 283 n n C6 C7 RET sing 284 n n C7 C8 RET doub 285 e n C7 H7 RET sing 286 n n C8 C9 RET sing 287 n n C8 H8 RET sing 288 n n C9 C10 RET doub 289 e n C9 C19 RET sing 290 n n C10 C11 RET sing 291 n n C10 H10 RET sing 292 n n C11 C12 RET doub 293 e n C11 H11 RET sing 294 n n C12 C13 RET sing 295 n n C12 H12 RET sing 296 n n C13 C14 RET doub 297 e n C13 C20 RET sing 298 n n C14 C15 RET sing 299 n n C14 H14 RET sing 300 n n C15 O1 RET doub 301 n n C15 H15 RET sing 302 n n C16 H161 RET sing 303 n n C16 H162 RET sing 304 n n C16 H163 RET sing 305 n n C17 H171 RET sing 306 n n C17 H172 RET sing 307 n n C17 H173 RET sing 308 n n C18 H181 RET sing 309 n n C18 H182 RET sing 310 n n C18 H183 RET sing 311 n n C19 H191 RET sing 312 n n C19 H192 RET sing 313 n n C19 H193 RET sing 314 n n C20 H201 RET sing 315 n n C20 H202 RET sing 316 n n C20 H203 RET sing 317 n n # _atom_sites.entry_id 6MQY _atom_sites.fract_transf_matrix[1][1] 0.01714 _atom_sites.fract_transf_matrix[1][2] 0.009896 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL GOL . C 2 GOL A 1 202 2 GOL GOL . D 2 GOL A 1 203 4 GOL GOL . E 3 RET A 1 204 1 RET RET . F 4 HOH A 1 301 13 HOH HOH . F 4 HOH A 2 302 6 HOH HOH . F 4 HOH A 3 303 2 HOH HOH . F 4 HOH A 4 304 44 HOH HOH . F 4 HOH A 5 305 8 HOH HOH . F 4 HOH A 6 306 4 HOH HOH . F 4 HOH A 7 307 36 HOH HOH . F 4 HOH A 8 308 18 HOH HOH . F 4 HOH A 9 309 7 HOH HOH . F 4 HOH A 10 310 19 HOH HOH . F 4 HOH A 11 311 43 HOH HOH . F 4 HOH A 12 312 45 HOH HOH . F 4 HOH A 13 313 3 HOH HOH . F 4 HOH A 14 314 24 HOH HOH . F 4 HOH A 15 315 32 HOH HOH . F 4 HOH A 16 316 22 HOH HOH . F 4 HOH A 17 317 21 HOH HOH . F 4 HOH A 18 318 26 HOH HOH . F 4 HOH A 19 319 28 HOH HOH . F 4 HOH A 20 320 30 HOH HOH . F 4 HOH A 21 321 5 HOH HOH . F 4 HOH A 22 322 17 HOH HOH . F 4 HOH A 23 323 10 HOH HOH . F 4 HOH A 24 324 12 HOH HOH . F 4 HOH A 25 325 9 HOH HOH . F 4 HOH A 26 326 25 HOH HOH . F 4 HOH A 27 327 33 HOH HOH . F 4 HOH A 28 328 31 HOH HOH . F 4 HOH A 29 329 27 HOH HOH . F 4 HOH A 30 330 15 HOH HOH . F 4 HOH A 31 331 35 HOH HOH . F 4 HOH A 32 332 41 HOH HOH . F 4 HOH A 33 333 16 HOH HOH . F 4 HOH A 34 334 11 HOH HOH . F 4 HOH A 35 335 23 HOH HOH . F 4 HOH A 36 336 34 HOH HOH . F 4 HOH A 37 337 39 HOH HOH . F 4 HOH A 38 338 40 HOH HOH . F 4 HOH A 39 339 42 HOH HOH . F 4 HOH A 40 340 47 HOH HOH . F 4 HOH A 41 341 46 HOH HOH . F 4 HOH A 42 342 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . E 3 -37.647 25.24 -8.065 1 50.91 ? C1 RET 204 A 1 HETATM 2 C C2 RET . . . E 3 -38.376 24.808 -6.791 1 43.63 ? C2 RET 204 A 1 HETATM 3 C C3 RET . . . E 3 -37.798 23.546 -6.17 1 42.65 ? C3 RET 204 A 1 HETATM 4 C C4 RET . . . E 3 -36.318 23.687 -5.865 1 44.7 ? C4 RET 204 A 1 HETATM 5 C C5 RET . . . E 3 -35.54 24.469 -6.892 1 47.35 ? C5 RET 204 A 1 HETATM 6 C C6 RET . . . E 3 -36.131 25.195 -7.858 1 54.96 ? C6 RET 204 A 1 HETATM 7 C C7 RET . . . E 3 -35.349 25.939 -8.822 1 52.76 ? C7 RET 204 A 1 HETATM 8 C C8 RET . . . E 3 -34.861 25.374 -9.875 1 46.04 ? C8 RET 204 A 1 HETATM 9 C C9 RET . . . E 3 -34.051 25.957 -10.909 1 54.28 ? C9 RET 204 A 1 HETATM 10 C C10 RET . . . E 3 -33.323 25.124 -11.681 1 51.57 ? C10 RET 204 A 1 HETATM 11 C C11 RET . . . E 3 -32.451 25.456 -12.766 1 52 ? C11 RET 204 A 1 HETATM 12 C C12 RET . . . E 3 -31.873 24.492 -13.451 1 46.13 ? C12 RET 204 A 1 HETATM 13 C C13 RET . . . E 3 -30.981 24.624 -14.567 1 45.27 ? C13 RET 204 A 1 HETATM 14 C C14 RET . . . E 3 -30.432 23.503 -15.066 1 48.95 ? C14 RET 204 A 1 HETATM 15 C C15 RET . . . E 3 -30.643 22.162 -14.594 1 43.04 ? C15 RET 204 A 1 HETATM 16 C C16 RET . . . E 3 -38.061 24.294 -9.201 1 46.2 ? C16 RET 204 A 1 HETATM 17 C C17 RET . . . E 3 -38.089 26.662 -8.433 1 54.2 ? C17 RET 204 A 1 HETATM 18 C C18 RET . . . E 3 -34.068 24.17 -6.85 1 47.24 ? C18 RET 204 A 1 HETATM 19 C C19 RET . . . E 3 -34.053 27.452 -11.066 1 54.24 ? C19 RET 204 A 1 HETATM 20 C C20 RET . . . E 3 -30.728 25.998 -15.119 1 49.79 ? C20 RET 204 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #