data_6MRE # _model_server_result.job_id naPbnIGXMt261wiHDgdbaw _model_server_result.datetime_utc '2024-10-19 20:08:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mre # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 6MRE # _exptl.entry_id 6MRE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MRE _cell.length_a 126.98 _cell.length_b 126.98 _cell.length_c 135.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MRE _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 377 A HIS 363 1_555 A N CSS 378 A CSS 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C CSS 378 A CSS 364 1_555 A N ALA 379 A ALA 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 274 n y N1 C6 PLP sing 275 n y C2 C2A PLP sing 276 n n C2 C3 PLP sing 277 n y C2A H2A1 PLP sing 278 n n C2A H2A2 PLP sing 279 n n C2A H2A3 PLP sing 280 n n C3 O3 PLP sing 281 n n C3 C4 PLP doub 282 n y O3 HO3 PLP sing 283 n n C4 C4A PLP sing 284 n n C4 C5 PLP sing 285 n y C4A O4A PLP doub 286 n n C4A H4A PLP sing 287 n n C5 C6 PLP doub 288 n y C5 C5A PLP sing 289 n n C6 H6 PLP sing 290 n n C5A O4P PLP sing 291 n n C5A H5A1 PLP sing 292 n n C5A H5A2 PLP sing 293 n n O4P P PLP sing 294 n n P O1P PLP doub 295 n n P O2P PLP sing 296 n n P O3P PLP sing 297 n n O2P HOP2 PLP sing 298 n n O3P HOP3 PLP sing 299 n n # _atom_sites.entry_id 6MRE _atom_sites.fract_transf_matrix[1][1] 0.007875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 500 500 PLP PLP . C 3 HOH A 1 601 695 HOH HOH . C 3 HOH A 2 602 608 HOH HOH . C 3 HOH A 3 603 532 HOH HOH . C 3 HOH A 4 604 563 HOH HOH . C 3 HOH A 5 605 682 HOH HOH . C 3 HOH A 6 606 689 HOH HOH . C 3 HOH A 7 607 513 HOH HOH . C 3 HOH A 8 608 704 HOH HOH . C 3 HOH A 9 609 556 HOH HOH . C 3 HOH A 10 610 693 HOH HOH . C 3 HOH A 11 611 688 HOH HOH . C 3 HOH A 12 612 687 HOH HOH . C 3 HOH A 13 613 572 HOH HOH . C 3 HOH A 14 614 520 HOH HOH . C 3 HOH A 15 615 694 HOH HOH . C 3 HOH A 16 616 555 HOH HOH . C 3 HOH A 17 617 514 HOH HOH . C 3 HOH A 18 618 707 HOH HOH . C 3 HOH A 19 619 714 HOH HOH . C 3 HOH A 20 620 591 HOH HOH . C 3 HOH A 21 621 726 HOH HOH . C 3 HOH A 22 622 705 HOH HOH . C 3 HOH A 23 623 547 HOH HOH . C 3 HOH A 24 624 527 HOH HOH . C 3 HOH A 25 625 706 HOH HOH . C 3 HOH A 26 626 650 HOH HOH . C 3 HOH A 27 627 678 HOH HOH . C 3 HOH A 28 628 680 HOH HOH . C 3 HOH A 29 629 675 HOH HOH . C 3 HOH A 30 630 712 HOH HOH . C 3 HOH A 31 631 524 HOH HOH . C 3 HOH A 32 632 592 HOH HOH . C 3 HOH A 33 633 504 HOH HOH . C 3 HOH A 34 634 510 HOH HOH . C 3 HOH A 35 635 596 HOH HOH . C 3 HOH A 36 636 681 HOH HOH . C 3 HOH A 37 637 677 HOH HOH . C 3 HOH A 38 638 551 HOH HOH . C 3 HOH A 39 639 674 HOH HOH . C 3 HOH A 40 640 685 HOH HOH . C 3 HOH A 41 641 715 HOH HOH . C 3 HOH A 42 642 518 HOH HOH . C 3 HOH A 43 643 696 HOH HOH . C 3 HOH A 44 644 692 HOH HOH . C 3 HOH A 45 645 544 HOH HOH . C 3 HOH A 46 646 567 HOH HOH . C 3 HOH A 47 647 656 HOH HOH . C 3 HOH A 48 648 702 HOH HOH . C 3 HOH A 49 649 709 HOH HOH . C 3 HOH A 50 650 541 HOH HOH . C 3 HOH A 51 651 618 HOH HOH . C 3 HOH A 52 652 652 HOH HOH . C 3 HOH A 53 653 587 HOH HOH . C 3 HOH A 54 654 684 HOH HOH . C 3 HOH A 55 655 549 HOH HOH . C 3 HOH A 56 656 523 HOH HOH . C 3 HOH A 57 657 721 HOH HOH . C 3 HOH A 58 658 517 HOH HOH . C 3 HOH A 59 659 719 HOH HOH . C 3 HOH A 60 660 565 HOH HOH . C 3 HOH A 61 661 522 HOH HOH . C 3 HOH A 62 662 512 HOH HOH . C 3 HOH A 63 663 503 HOH HOH . C 3 HOH A 64 664 502 HOH HOH . C 3 HOH A 65 665 561 HOH HOH . C 3 HOH A 66 666 528 HOH HOH . C 3 HOH A 67 667 590 HOH HOH . C 3 HOH A 68 668 558 HOH HOH . C 3 HOH A 69 669 699 HOH HOH . C 3 HOH A 70 670 516 HOH HOH . C 3 HOH A 71 671 534 HOH HOH . C 3 HOH A 72 672 597 HOH HOH . C 3 HOH A 73 673 579 HOH HOH . C 3 HOH A 74 674 542 HOH HOH . C 3 HOH A 75 675 557 HOH HOH . C 3 HOH A 76 676 529 HOH HOH . C 3 HOH A 77 677 713 HOH HOH . C 3 HOH A 78 678 578 HOH HOH . C 3 HOH A 79 679 665 HOH HOH . C 3 HOH A 80 680 610 HOH HOH . C 3 HOH A 81 681 606 HOH HOH . C 3 HOH A 82 682 506 HOH HOH . C 3 HOH A 83 683 533 HOH HOH . C 3 HOH A 84 684 530 HOH HOH . C 3 HOH A 85 685 521 HOH HOH . C 3 HOH A 86 686 626 HOH HOH . C 3 HOH A 87 687 723 HOH HOH . C 3 HOH A 88 688 582 HOH HOH . C 3 HOH A 89 689 607 HOH HOH . C 3 HOH A 90 690 683 HOH HOH . C 3 HOH A 91 691 535 HOH HOH . C 3 HOH A 92 692 508 HOH HOH . C 3 HOH A 93 693 570 HOH HOH . C 3 HOH A 94 694 725 HOH HOH . C 3 HOH A 95 695 703 HOH HOH . C 3 HOH A 96 696 553 HOH HOH . C 3 HOH A 97 697 716 HOH HOH . C 3 HOH A 98 698 571 HOH HOH . C 3 HOH A 99 699 708 HOH HOH . C 3 HOH A 100 700 717 HOH HOH . C 3 HOH A 101 701 552 HOH HOH . C 3 HOH A 102 702 538 HOH HOH . C 3 HOH A 103 703 519 HOH HOH . C 3 HOH A 104 704 710 HOH HOH . C 3 HOH A 105 705 576 HOH HOH . C 3 HOH A 106 706 525 HOH HOH . C 3 HOH A 107 707 697 HOH HOH . C 3 HOH A 108 708 691 HOH HOH . C 3 HOH A 109 709 698 HOH HOH . C 3 HOH A 110 710 690 HOH HOH . C 3 HOH A 111 711 718 HOH HOH . C 3 HOH A 112 712 724 HOH HOH . C 3 HOH A 113 713 676 HOH HOH . C 3 HOH A 114 714 722 HOH HOH . C 3 HOH A 115 715 679 HOH HOH . C 3 HOH A 116 716 569 HOH HOH . C 3 HOH A 117 717 511 HOH HOH . C 3 HOH A 118 718 611 HOH HOH . C 3 HOH A 119 719 720 HOH HOH . C 3 HOH A 120 720 701 HOH HOH . C 3 HOH A 121 721 686 HOH HOH . C 3 HOH A 122 722 711 HOH HOH . C 3 HOH A 123 723 700 HOH HOH . C 3 HOH A 124 724 627 HOH HOH . C 3 HOH A 125 725 617 HOH HOH . C 3 HOH A 126 726 641 HOH HOH . C 3 HOH A 127 727 559 HOH HOH . C 3 HOH A 128 728 531 HOH HOH . C 3 HOH A 129 729 672 HOH HOH . C 3 HOH A 130 730 661 HOH HOH . C 3 HOH A 131 731 593 HOH HOH . C 3 HOH A 132 732 536 HOH HOH . C 3 HOH A 133 733 546 HOH HOH . C 3 HOH A 134 734 727 HOH HOH . C 3 HOH A 135 735 673 HOH HOH . C 3 HOH A 136 736 662 HOH HOH . C 3 HOH A 137 737 663 HOH HOH . C 3 HOH A 138 738 671 HOH HOH . C 3 HOH A 139 739 669 HOH HOH . C 3 HOH A 140 740 660 HOH HOH . C 3 HOH A 141 741 664 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 26.138 45.877 7.573 1 42.12 ? N1 PLP 500 A 1 HETATM 2 C C2 PLP . . . B 2 26.172 47.222 7.859 1 46.96 ? C2 PLP 500 A 1 HETATM 3 C C2A PLP . . . B 2 25.377 47.696 9.043 1 43.47 ? C2A PLP 500 A 1 HETATM 4 C C3 PLP . . . B 2 26.944 48.095 7.081 1 47.87 ? C3 PLP 500 A 1 HETATM 5 O O3 PLP . . . B 2 27.005 49.436 7.361 1 46.45 ? O3 PLP 500 A 1 HETATM 6 C C4 PLP . . . B 2 27.683 47.591 6.016 1 48.86 ? C4 PLP 500 A 1 HETATM 7 C C4A PLP . . . B 2 28.556 48.492 5.189 1 41.76 ? C4A PLP 500 A 1 HETATM 8 C C5 PLP . . . B 2 27.628 46.229 5.739 1 46.03 ? C5 PLP 500 A 1 HETATM 9 C C6 PLP . . . B 2 26.86 45.383 6.523 1 46.65 ? C6 PLP 500 A 1 HETATM 10 C C5A PLP . . . B 2 28.39 45.65 4.574 1 47.96 ? C5A PLP 500 A 1 HETATM 11 O O4P PLP . . . B 2 29.689 45.228 4.909 1 52.2 ? O4P PLP 500 A 1 HETATM 12 P P PLP . . . B 2 30.773 45.019 3.73 1 44.37 ? P PLP 500 A 1 HETATM 13 O O1P PLP . . . B 2 30.332 45.759 2.485 1 47.18 ? O1P PLP 500 A 1 HETATM 14 O O2P PLP . . . B 2 30.925 43.534 3.451 1 48.77 ? O2P PLP 500 A 1 HETATM 15 O O3P PLP . . . B 2 32.064 45.626 4.214 1 50.29 ? O3P PLP 500 A 1 HETATM 16 H H2A1 PLP . . . B 2 25.489 48.775 9.147 1 52.18 ? H2A1 PLP 500 A 1 HETATM 17 H H2A2 PLP . . . B 2 25.742 47.205 9.946 1 52.18 ? H2A2 PLP 500 A 1 HETATM 18 H H2A3 PLP . . . B 2 24.325 47.451 8.897 1 52.18 ? H2A3 PLP 500 A 1 HETATM 19 H HO3 PLP . . . B 2 27.485 49.898 6.642 1 55.75 ? HO3 PLP 500 A 1 HETATM 20 H H4A PLP . . . B 2 29.527 48.14 4.841 1 50.12 ? H4A PLP 500 A 1 HETATM 21 H H6 PLP . . . B 2 26.832 44.316 6.301 1 55.98 ? H6 PLP 500 A 1 HETATM 22 H H5A1 PLP . . . B 2 27.835 44.799 4.18 1 57.56 ? H5A1 PLP 500 A 1 HETATM 23 H H5A2 PLP . . . B 2 28.455 46.401 3.788 1 57.56 ? H5A2 PLP 500 A 1 # _model_server_stats.io_time_ms 98 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 23 #