data_6MRO # _model_server_result.job_id j5QycFIkg6n1AszblcQZgw _model_server_result.datetime_utc '2024-10-19 01:46:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mro # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6MRO # _exptl.entry_id 6MRO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MRO _cell.length_a 40.99 _cell.length_b 40.99 _cell.length_c 104.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MRO _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 141 A ASP 141 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc2 A OD2 ASP 141 A ASP 141 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc3 A OD2 ASP 141 A ASP 141 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc4 A O GLU 143 A GLU 143 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc5 A O GLY 145 A GLY 145 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc6 A OE2 GLU 146 A GLU 146 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc7 A OE1 GLU 146 A GLU 146 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc8 A OE2 GLU 146 A GLU 146 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc9 A OE1 GLU 148 A GLU 148 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc10 A O ARG 152 A ARG 152 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc11 A OE1 GLU 157 A GLU 157 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc12 A OE2 GLU 157 A GLU 157 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc13 C CA CA . A CA 202 1_555 M O HOH . A HOH 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc14 D CA CA . A CA 203 1_555 M O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc15 D CA CA . A CA 203 1_555 M O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 6MRO _atom_sites.fract_transf_matrix[1][1] 0.024396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 201 201 SAH SAH . C 3 CA A 1 202 1 CA CA . D 3 CA A 1 203 2 CA CA . E 4 CL A 1 204 1 CL CL . F 4 CL A 1 205 2 CL CL . G 4 CL A 1 206 5 CL CL . H 4 CL A 1 207 8 CL CL . I 4 CL A 1 208 9 CL CL . J 4 CL A 1 209 10 CL CL . K 4 CL A 1 210 12 CL CL . L 4 CL A 1 211 13 CL CL . M 5 HOH A 1 301 106 HOH HOH . M 5 HOH A 2 302 133 HOH HOH . M 5 HOH A 3 303 141 HOH HOH . M 5 HOH A 4 304 87 HOH HOH . M 5 HOH A 5 305 18 HOH HOH . M 5 HOH A 6 306 112 HOH HOH . M 5 HOH A 7 307 48 HOH HOH . M 5 HOH A 8 308 82 HOH HOH . M 5 HOH A 9 309 31 HOH HOH . M 5 HOH A 10 310 111 HOH HOH . M 5 HOH A 11 311 15 HOH HOH . M 5 HOH A 12 312 70 HOH HOH . M 5 HOH A 13 313 54 HOH HOH . M 5 HOH A 14 314 100 HOH HOH . M 5 HOH A 15 315 102 HOH HOH . M 5 HOH A 16 316 52 HOH HOH . M 5 HOH A 17 317 57 HOH HOH . M 5 HOH A 18 318 5 HOH HOH . M 5 HOH A 19 319 34 HOH HOH . M 5 HOH A 20 320 14 HOH HOH . M 5 HOH A 21 321 93 HOH HOH . M 5 HOH A 22 322 110 HOH HOH . M 5 HOH A 23 323 97 HOH HOH . M 5 HOH A 24 324 40 HOH HOH . M 5 HOH A 25 325 12 HOH HOH . M 5 HOH A 26 326 61 HOH HOH . M 5 HOH A 27 327 2 HOH HOH . M 5 HOH A 28 328 109 HOH HOH . M 5 HOH A 29 329 24 HOH HOH . M 5 HOH A 30 330 69 HOH HOH . M 5 HOH A 31 331 29 HOH HOH . M 5 HOH A 32 332 75 HOH HOH . M 5 HOH A 33 333 49 HOH HOH . M 5 HOH A 34 334 13 HOH HOH . M 5 HOH A 35 335 72 HOH HOH . M 5 HOH A 36 336 105 HOH HOH . M 5 HOH A 37 337 50 HOH HOH . M 5 HOH A 38 338 143 HOH HOH . M 5 HOH A 39 339 64 HOH HOH . M 5 HOH A 40 340 59 HOH HOH . M 5 HOH A 41 341 9 HOH HOH . M 5 HOH A 42 342 32 HOH HOH . M 5 HOH A 43 343 16 HOH HOH . M 5 HOH A 44 344 71 HOH HOH . M 5 HOH A 45 345 154 HOH HOH . M 5 HOH A 46 346 85 HOH HOH . M 5 HOH A 47 347 11 HOH HOH . M 5 HOH A 48 348 1 HOH HOH . M 5 HOH A 49 349 117 HOH HOH . M 5 HOH A 50 350 22 HOH HOH . M 5 HOH A 51 351 137 HOH HOH . M 5 HOH A 52 352 21 HOH HOH . M 5 HOH A 53 353 144 HOH HOH . M 5 HOH A 54 354 56 HOH HOH . M 5 HOH A 55 355 45 HOH HOH . M 5 HOH A 56 356 30 HOH HOH . M 5 HOH A 57 357 36 HOH HOH . M 5 HOH A 58 358 86 HOH HOH . M 5 HOH A 59 359 6 HOH HOH . M 5 HOH A 60 360 123 HOH HOH . M 5 HOH A 61 361 20 HOH HOH . M 5 HOH A 62 362 63 HOH HOH . M 5 HOH A 63 363 25 HOH HOH . M 5 HOH A 64 364 66 HOH HOH . M 5 HOH A 65 365 96 HOH HOH . M 5 HOH A 66 366 95 HOH HOH . M 5 HOH A 67 367 43 HOH HOH . M 5 HOH A 68 368 60 HOH HOH . M 5 HOH A 69 369 55 HOH HOH . M 5 HOH A 70 370 3 HOH HOH . M 5 HOH A 71 371 68 HOH HOH . M 5 HOH A 72 372 94 HOH HOH . M 5 HOH A 73 373 116 HOH HOH . M 5 HOH A 74 374 42 HOH HOH . M 5 HOH A 75 375 46 HOH HOH . M 5 HOH A 76 376 99 HOH HOH . M 5 HOH A 77 377 79 HOH HOH . M 5 HOH A 78 378 74 HOH HOH . M 5 HOH A 79 379 53 HOH HOH . M 5 HOH A 80 380 101 HOH HOH . M 5 HOH A 81 381 17 HOH HOH . M 5 HOH A 82 382 140 HOH HOH . M 5 HOH A 83 383 26 HOH HOH . M 5 HOH A 84 384 84 HOH HOH . M 5 HOH A 85 385 77 HOH HOH . M 5 HOH A 86 386 132 HOH HOH . M 5 HOH A 87 387 73 HOH HOH . M 5 HOH A 88 388 148 HOH HOH . M 5 HOH A 89 389 47 HOH HOH . M 5 HOH A 90 390 28 HOH HOH . M 5 HOH A 91 391 39 HOH HOH . M 5 HOH A 92 392 119 HOH HOH . M 5 HOH A 93 393 104 HOH HOH . M 5 HOH A 94 394 19 HOH HOH . M 5 HOH A 95 395 90 HOH HOH . M 5 HOH A 96 396 8 HOH HOH . M 5 HOH A 97 397 44 HOH HOH . M 5 HOH A 98 398 33 HOH HOH . M 5 HOH A 99 399 35 HOH HOH . M 5 HOH A 100 400 38 HOH HOH . M 5 HOH A 101 401 62 HOH HOH . M 5 HOH A 102 402 4 HOH HOH . M 5 HOH A 103 403 37 HOH HOH . M 5 HOH A 104 404 135 HOH HOH . M 5 HOH A 105 405 103 HOH HOH . M 5 HOH A 106 406 121 HOH HOH . M 5 HOH A 107 407 128 HOH HOH . M 5 HOH A 108 408 23 HOH HOH . M 5 HOH A 109 409 83 HOH HOH . M 5 HOH A 110 410 130 HOH HOH . M 5 HOH A 111 411 155 HOH HOH . M 5 HOH A 112 412 7 HOH HOH . M 5 HOH A 113 413 10 HOH HOH . M 5 HOH A 114 414 127 HOH HOH . M 5 HOH A 115 415 145 HOH HOH . M 5 HOH A 116 416 51 HOH HOH . M 5 HOH A 117 417 27 HOH HOH . M 5 HOH A 118 418 122 HOH HOH . M 5 HOH A 119 419 113 HOH HOH . M 5 HOH A 120 420 149 HOH HOH . M 5 HOH A 121 421 92 HOH HOH . M 5 HOH A 122 422 118 HOH HOH . M 5 HOH A 123 423 58 HOH HOH . M 5 HOH A 124 424 139 HOH HOH . M 5 HOH A 125 425 124 HOH HOH . M 5 HOH A 126 426 136 HOH HOH . M 5 HOH A 127 427 89 HOH HOH . M 5 HOH A 128 428 153 HOH HOH . M 5 HOH A 129 429 125 HOH HOH . M 5 HOH A 130 430 67 HOH HOH . M 5 HOH A 131 431 41 HOH HOH . M 5 HOH A 132 432 108 HOH HOH . M 5 HOH A 133 433 115 HOH HOH . M 5 HOH A 134 434 129 HOH HOH . M 5 HOH A 135 435 120 HOH HOH . M 5 HOH A 136 436 150 HOH HOH . M 5 HOH A 137 437 126 HOH HOH . M 5 HOH A 138 438 147 HOH HOH . M 5 HOH A 139 439 98 HOH HOH . M 5 HOH A 140 440 142 HOH HOH . M 5 HOH A 141 441 146 HOH HOH . M 5 HOH A 142 442 81 HOH HOH . M 5 HOH A 143 443 76 HOH HOH . M 5 HOH A 144 444 88 HOH HOH . M 5 HOH A 145 445 80 HOH HOH . M 5 HOH A 146 446 78 HOH HOH . M 5 HOH A 147 447 65 HOH HOH . M 5 HOH A 148 448 107 HOH HOH . M 5 HOH A 149 449 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 23.898 -6.121 -1.429 1 14.59 ? N SAH 201 A 1 HETATM 2 C CA SAH . . . B 2 25.324 -6.472 -1.292 1 14.9 ? CA SAH 201 A 1 HETATM 3 C CB SAH . . . B 2 25.747 -6.428 0.171 1 15.24 ? CB SAH 201 A 1 HETATM 4 C CG SAH . . . B 2 24.845 -7.245 1.096 1 17.86 ? CG SAH 201 A 1 HETATM 5 S SD SAH . . . B 2 25.454 -7.35 2.795 1 18.28 ? SD SAH 201 A 1 HETATM 6 C C SAH . . . B 2 25.629 -7.845 -1.87 1 19.19 ? C SAH 201 A 1 HETATM 7 O O SAH . . . B 2 24.713 -8.589 -2.252 1 17.37 ? O SAH 201 A 1 HETATM 8 O OXT SAH . . . B 2 26.806 -8.229 -1.948 1 20.22 ? OXT SAH 201 A 1 HETATM 9 C C5' SAH . . . B 2 24.402 -6.041 3.496 1 18.96 ? C5' SAH 201 A 1 HETATM 10 C C4' SAH . . . B 2 24.92 -4.633 3.196 1 19.05 ? C4' SAH 201 A 1 HETATM 11 O O4' SAH . . . B 2 24.044 -3.684 3.791 1 22.38 ? O4' SAH 201 A 1 HETATM 12 C C3' SAH . . . B 2 26.327 -4.332 3.71 1 16.93 ? C3' SAH 201 A 1 HETATM 13 O O3' SAH . . . B 2 27.098 -3.873 2.61 1 16.83 ? O3' SAH 201 A 1 HETATM 14 C C2' SAH . . . B 2 26.104 -3.268 4.776 1 19.04 ? C2' SAH 201 A 1 HETATM 15 O O2' SAH . . . B 2 27.152 -2.318 4.899 1 20.99 ? O2' SAH 201 A 1 HETATM 16 C C1' SAH . . . B 2 24.81 -2.619 4.315 1 17.4 ? C1' SAH 201 A 1 HETATM 17 N N9 SAH . . . B 2 24.012 -1.973 5.363 1 22.07 ? N9 SAH 201 A 1 HETATM 18 C C8 SAH . . . B 2 23.663 -2.47 6.6 1 23 ? C8 SAH 201 A 1 HETATM 19 N N7 SAH . . . B 2 22.88 -1.565 7.213 1 22.27 ? N7 SAH 201 A 1 HETATM 20 C C5 SAH . . . B 2 22.708 -0.512 6.377 1 22.76 ? C5 SAH 201 A 1 HETATM 21 C C6 SAH . . . B 2 22.012 0.688 6.492 1 24.55 ? C6 SAH 201 A 1 HETATM 22 N N6 SAH . . . B 2 21.335 0.976 7.596 1 26.03 ? N6 SAH 201 A 1 HETATM 23 N N1 SAH . . . B 2 22.034 1.576 5.449 1 19.99 ? N1 SAH 201 A 1 HETATM 24 C C2 SAH . . . B 2 22.733 1.286 4.292 1 19.05 ? C2 SAH 201 A 1 HETATM 25 N N3 SAH . . . B 2 23.436 0.107 4.178 1 19.09 ? N3 SAH 201 A 1 HETATM 26 C C4 SAH . . . B 2 23.403 -0.774 5.207 1 19.76 ? C4 SAH 201 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #