data_6MS4 # _model_server_result.job_id tZ4kIPkl60iM_Ab1ETN2zg _model_server_result.datetime_utc '2025-08-31 04:08:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ms4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":103}' # _entry.id 6MS4 # _exptl.entry_id 6MS4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MS4 _cell.length_a 67.81 _cell.length_b 67.81 _cell.length_c 124.75 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MS4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 55 A CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc1 B SG CYS 10 B CYS 34 1_555 G ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc2 B SG CYS 13 B CYS 37 1_555 G ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc3 B SG CYS 20 B CYS 44 1_555 G ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc4 B SG CYS 29 B CYS 53 1_555 G ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6MS4 _atom_sites.fract_transf_matrix[1][1] 0.014747 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014747 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PGE A 1 201 2 PGE PGE . D 3 PGE A 1 202 3 PGE PGE . E 4 GOL A 1 203 2 GOL GOL . F 5 NA A 1 204 1 NA NA . G 6 ZN B 1 101 1 ZN ZN . H 3 PGE B 1 102 1 PGE PGE . I 4 GOL B 1 103 1 GOL GOL . J 7 HOH A 1 301 22 HOH HOH . J 7 HOH A 2 302 33 HOH HOH . J 7 HOH A 3 303 19 HOH HOH . J 7 HOH A 4 304 10 HOH HOH . J 7 HOH A 5 305 2 HOH HOH . J 7 HOH A 6 306 32 HOH HOH . J 7 HOH A 7 307 18 HOH HOH . J 7 HOH A 8 308 29 HOH HOH . J 7 HOH A 9 309 11 HOH HOH . J 7 HOH A 10 310 20 HOH HOH . J 7 HOH A 11 311 1 HOH HOH . J 7 HOH A 12 312 24 HOH HOH . J 7 HOH A 13 313 4 HOH HOH . J 7 HOH A 14 314 5 HOH HOH . J 7 HOH A 15 315 28 HOH HOH . J 7 HOH A 16 316 21 HOH HOH . J 7 HOH A 17 317 17 HOH HOH . K 7 HOH B 1 201 16 HOH HOH . K 7 HOH B 2 202 26 HOH HOH . K 7 HOH B 3 203 9 HOH HOH . K 7 HOH B 4 204 25 HOH HOH . K 7 HOH B 5 205 31 HOH HOH . K 7 HOH B 6 206 7 HOH HOH . K 7 HOH B 7 207 34 HOH HOH . K 7 HOH B 8 208 3 HOH HOH . K 7 HOH B 9 209 23 HOH HOH . K 7 HOH B 10 210 30 HOH HOH . K 7 HOH B 11 211 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 -5.97 -37.598 -6.637 1 139.48 ? C1 GOL 103 B 1 HETATM 2 O O1 GOL . . . I 4 -6.749 -37.876 -7.761 1 136.98 ? O1 GOL 103 B 1 HETATM 3 C C2 GOL . . . I 4 -6.125 -36.084 -6.332 1 139.39 ? C2 GOL 103 B 1 HETATM 4 O O2 GOL . . . I 4 -7.457 -35.722 -6.15 1 141.18 ? O2 GOL 103 B 1 HETATM 5 C C3 GOL . . . I 4 -5.266 -35.841 -5.058 1 132.88 ? C3 GOL 103 B 1 HETATM 6 O O3 GOL . . . I 4 -3.977 -36.307 -5.332 1 125.96 ? O3 GOL 103 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #