data_6MSE
#
_model_server_result.job_id            lwhYFFTqbJ6AV04WCkJkDw 
_model_server_result.datetime_utc      '2024-11-22 15:55:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mse 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CB","auth_seq_id":401}' 
#
_entry.id    6MSE 
#
_exptl.entry_id    6MSE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          38 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    48-meric 
_pdbx_struct_assembly.oligomeric_count      48 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 38 ZA N N 
? 38 CB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 AA SG CYS 41 M CYS 41 1_555 AA SG CYS 186 M CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 OA SG CYS 41 m CYS 41 1_555 OA SG CYS 186 m CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc1 I OE2 GLU 51 c GLU 52 1_555 WA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc2 I NE2 HIS 114 c HIS 115 1_555 WA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc3 I OG SER 122 c SER 123 1_555 WA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc4 I OD2 ASP 125 c ASP 126 1_555 WA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc5 WA ZN ZN . c ZN 401 1_555 S O GLY 76 u GLY 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc6 M OG1 THR 223 A THR 223 1_555 YA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc7 XA O2G ATP . A ATP 501 1_555 YA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc8 XA O1B ATP . A ATP 501 1_555 YA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc9 P OG1 THR 213 D THR 213 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc10 AB O3G ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc11 AB O1B ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc12 AB O3B ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? 
metalc ? metalc13 AB O3A ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc14 R OG1 THR 234 F THR 234 1_555 EB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc15 DB O2B ATP . F ATP 501 1_555 EB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc16 DB O3B ATP . F ATP 501 1_555 EB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6MSE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
WA 35 ZN c 1 401 401 ZN ZN . 
XA 36 ATP A 1 501 434 ATP ATP . 
YA 37 MG A 1 502 435 MG MG . 
ZA 38 ADP B 1 501 441 ADP ADP . 
AB 36 ATP D 1 501 419 ATP ATP . 
BB 37 MG D 1 502 420 MG MG . 
CB 38 ADP E 1 401 390 ADP ADP . 
DB 36 ATP F 1 501 440 ATP ATP . 
EB 37 MG F 1 502 441 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . CB 38 239.452 233.995 215.865 1 108.49 ? PB ADP 401 E 1 
HETATM 2 O O1B ADP . . . CB 38 239.27 234.358 214.416 1 108.49 ? O1B ADP 401 E 1 
HETATM 3 O O2B ADP . . . CB 38 240.841 233.539 216.224 1 108.49 ? O2B ADP 401 E 1 
HETATM 4 O O3B ADP . . . CB 38 238.339 233.162 216.441 1 108.49 ? O3B ADP 401 E 1 
HETATM 5 P PA ADP . . . CB 38 240.564 236.389 216.625 1 108.49 ? PA ADP 401 E 1 
HETATM 6 O O1A ADP . . . CB 38 241.099 236.487 215.223 1 108.49 ? O1A ADP 401 E 1 
HETATM 7 O O2A ADP . . . CB 38 241.495 236.018 217.745 1 108.49 ? O2A ADP 401 E 1 
HETATM 8 O O3A ADP . . . CB 38 239.314 235.389 216.639 1 108.49 ? O3A ADP 401 E 1 
HETATM 9 O O5' ADP . . . CB 38 239.889 237.788 217.001 1 108.49 ? O5' ADP 401 E 1 
HETATM 10 C C5' ADP . . . CB 38 240.749 238.861 217.339 1 108.49 ? C5' ADP 401 E 1 
HETATM 11 C C4' ADP . . . CB 38 239.941 240.111 217.639 1 108.49 ? C4' ADP 401 E 1 
HETATM 12 O O4' ADP . . . CB 38 238.75 239.804 218.362 1 108.49 ? O4' ADP 401 E 1 
HETATM 13 C C3' ADP . . . CB 38 240.769 241.037 218.499 1 108.49 ? C3' ADP 401 E 1 
HETATM 14 O O3' ADP . . . CB 38 241.116 242.202 217.76 1 108.49 ? O3' ADP 401 E 1 
HETATM 15 C C2' ADP . . . CB 38 239.881 241.428 219.651 1 108.49 ? C2' ADP 401 E 1 
HETATM 16 O O2' ADP . . . CB 38 239.633 242.832 219.61 1 108.49 ? O2' ADP 401 E 1 
HETATM 17 C C1' ADP . . . CB 38 238.577 240.677 219.477 1 108.49 ? C1' ADP 401 E 1 
HETATM 18 N N9 ADP . . . CB 38 238.292 239.817 220.647 1 108.49 ? N9 ADP 401 E 1 
HETATM 19 C C8 ADP . . . CB 38 237.937 238.531 220.528 1 108.49 ? C8 ADP 401 E 1 
HETATM 20 N N7 ADP . . . CB 38 237.726 237.96 221.734 1 108.49 ? N7 ADP 401 E 1 
HETATM 21 C C5 ADP . . . CB 38 237.942 238.901 222.66 1 108.49 ? C5 ADP 401 E 1 
HETATM 22 C C6 ADP . . . CB 38 237.89 238.953 224.133 1 108.49 ? C6 ADP 401 E 1 
HETATM 23 N N6 ADP . . . CB 38 237.557 237.863 224.856 1 108.49 ? N6 ADP 401 E 1 
HETATM 24 N N1 ADP . . . CB 38 238.181 240.117 224.736 1 108.49 ? N1 ADP 401 E 1 
HETATM 25 C C2 ADP . . . CB 38 238.512 241.203 224.025 1 108.49 ? C2 ADP 401 E 1 
HETATM 26 N N3 ADP . . . CB 38 238.576 241.227 222.687 1 108.49 ? N3 ADP 401 E 1 
HETATM 27 C C4 ADP . . . CB 38 238.305 240.129 221.947 1 108.49 ? C4 ADP 401 E 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    141 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           27 
#