data_6MSE # _model_server_result.job_id oAhlhIrnUKdvNMnshErb9w _model_server_result.datetime_utc '2024-11-26 00:07:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mse # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"XA","auth_seq_id":501}' # _entry.id 6MSE # _exptl.entry_id 6MSE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 36 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 48-meric _pdbx_struct_assembly.oligomeric_count 48 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 36 XA N N ? 36 AB N N ? 36 DB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 AA SG CYS 41 M CYS 41 1_555 AA SG CYS 186 M CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 OA SG CYS 41 m CYS 41 1_555 OA SG CYS 186 m CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc1 I OE2 GLU 51 c GLU 52 1_555 WA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc2 I NE2 HIS 114 c HIS 115 1_555 WA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc3 I OG SER 122 c SER 123 1_555 WA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc4 I OD2 ASP 125 c ASP 126 1_555 WA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc5 WA ZN ZN . c ZN 401 1_555 S O GLY 76 u GLY 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc6 M OG1 THR 223 A THR 223 1_555 YA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc7 XA O2G ATP . A ATP 501 1_555 YA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc8 XA O1B ATP . A ATP 501 1_555 YA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc9 P OG1 THR 213 D THR 213 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc10 AB O3G ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc11 AB O1B ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc12 AB O3B ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc13 AB O3A ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc14 R OG1 THR 234 F THR 234 1_555 EB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc15 DB O2B ATP . F ATP 501 1_555 EB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc16 DB O3B ATP . F ATP 501 1_555 EB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6MSE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code WA 35 ZN c 1 401 401 ZN ZN . XA 36 ATP A 1 501 434 ATP ATP . YA 37 MG A 1 502 435 MG MG . ZA 38 ADP B 1 501 441 ADP ADP . AB 36 ATP D 1 501 419 ATP ATP . BB 37 MG D 1 502 420 MG MG . CB 38 ADP E 1 401 390 ADP ADP . DB 36 ATP F 1 501 440 ATP ATP . EB 37 MG F 1 502 441 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . XA 36 223.476 227.046 164.252 1 123.85 ? PG ATP 501 A 1 HETATM 2 O O1G ATP . . . XA 36 223.075 225.601 164.372 1 123.85 ? O1G ATP 501 A 1 HETATM 3 O O2G ATP . . . XA 36 224.913 227.33 164.599 1 123.85 ? O2G ATP 501 A 1 HETATM 4 O O3G ATP . . . XA 36 222.52 228.026 164.872 1 123.85 ? O3G ATP 501 A 1 HETATM 5 P PB ATP . . . XA 36 223.979 228.616 161.984 1 123.85 ? PB ATP 501 A 1 HETATM 6 O O1B ATP . . . XA 36 225.471 228.681 162.184 1 123.85 ? O1B ATP 501 A 1 HETATM 7 O O2B ATP . . . XA 36 223.107 229.792 162.317 1 123.85 ? O2B ATP 501 A 1 HETATM 8 O O3B ATP . . . XA 36 223.339 227.323 162.679 1 123.85 ? O3B ATP 501 A 1 HETATM 9 P PA ATP . . . XA 36 224.723 229.016 159.399 1 123.85 ? PA ATP 501 A 1 HETATM 10 O O1A ATP . . . XA 36 225.999 228.219 159.373 1 123.85 ? O1A ATP 501 A 1 HETATM 11 O O2A ATP . . . XA 36 224.743 230.485 159.725 1 123.85 ? O2A ATP 501 A 1 HETATM 12 O O3A ATP . . . XA 36 223.735 228.311 160.438 1 123.85 ? O3A ATP 501 A 1 HETATM 13 O O5' ATP . . . XA 36 223.984 228.768 158.002 1 123.85 ? O5' ATP 501 A 1 HETATM 14 C C5' ATP . . . XA 36 223.796 227.419 157.593 1 123.85 ? C5' ATP 501 A 1 HETATM 15 C C4' ATP . . . XA 36 223.83 227.357 156.078 1 123.85 ? C4' ATP 501 A 1 HETATM 16 O O4' ATP . . . XA 36 222.572 227.762 155.548 1 123.85 ? O4' ATP 501 A 1 HETATM 17 C C3' ATP . . . XA 36 224.879 228.298 155.523 1 123.85 ? C3' ATP 501 A 1 HETATM 18 O O3' ATP . . . XA 36 225.948 227.553 154.94 1 123.85 ? O3' ATP 501 A 1 HETATM 19 C C2' ATP . . . XA 36 224.178 229.097 154.451 1 123.85 ? C2' ATP 501 A 1 HETATM 20 O O2' ATP . . . XA 36 224.773 228.835 153.18 1 123.85 ? O2' ATP 501 A 1 HETATM 21 C C1' ATP . . . XA 36 222.729 228.652 154.451 1 123.85 ? C1' ATP 501 A 1 HETATM 22 N N9 ATP . . . XA 36 221.9 229.828 154.756 1 123.85 ? N9 ATP 501 A 1 HETATM 23 C C8 ATP . . . XA 36 221.17 229.966 155.871 1 123.85 ? C8 ATP 501 A 1 HETATM 24 N N7 ATP . . . XA 36 220.514 231.148 155.88 1 123.85 ? N7 ATP 501 A 1 HETATM 25 C C5 ATP . . . XA 36 220.836 231.79 154.748 1 123.85 ? C5 ATP 501 A 1 HETATM 26 C C6 ATP . . . XA 36 220.495 233.089 154.138 1 123.85 ? C6 ATP 501 A 1 HETATM 27 N N6 ATP . . . XA 36 219.657 233.947 154.76 1 123.85 ? N6 ATP 501 A 1 HETATM 28 N N1 ATP . . . XA 36 221.04 233.387 152.942 1 123.85 ? N1 ATP 501 A 1 HETATM 29 C C2 ATP . . . XA 36 221.871 232.534 152.32 1 123.85 ? C2 ATP 501 A 1 HETATM 30 N N3 ATP . . . XA 36 222.225 231.339 152.818 1 123.85 ? N3 ATP 501 A 1 HETATM 31 C C4 ATP . . . XA 36 221.741 230.911 154.004 1 123.85 ? C4 ATP 501 A 1 # _model_server_stats.io_time_ms 201 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 152 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 31 #