data_6MSG
#
_model_server_result.job_id            uM99SAvvCDGBJZEYcR1IkQ 
_model_server_result.datetime_utc      '2025-02-05 17:07:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6msg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AB","auth_seq_id":501}' 
#
_entry.id    6MSG 
#
_exptl.entry_id    6MSG 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          37 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    48-meric 
_pdbx_struct_assembly.oligomeric_count      48 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 37 YA N N 
? 37 AB N N 
? 37 CB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 633 U CYS 633 1_555 A SG CYS 659 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 M SG CYS 236 A CYS 236 1_555 M SG CYS 270 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 AA SG CYS 41 M CYS 41 1_555 AA SG CYS 186 M CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf4 GA SG CYS 70 S CYS 43 1_555 GA SG CYS 223 S CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 OA SG CYS 41 m CYS 41 1_555 OA SG CYS 186 m CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf6 UA SG CYS 70 s CYS 43 1_555 UA SG CYS 223 s CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 I NE2 HIS 112 c HIS 113 1_555 WA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc2 I NE2 HIS 114 c HIS 115 1_555 WA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc3 I OD2 ASP 125 c ASP 126 1_555 WA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc4 YA O1B ATP . C ATP 501 1_555 ZA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc5 YA O2B ATP . C ATP 501 1_555 ZA MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc6 AB O3G ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc7 AB O1B ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc8 AB O3B ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc9 Q OG1 THR 195 E THR 181 1_555 DB MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc10 CB O2G ATP . E ATP 401 1_555 DB MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc11 CB O1B ATP . E ATP 401 1_555 DB MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     6MSG 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
WA 35 ZN c 1 401 401 ZN ZN . 
XA 36 ADP A 1 501 434 ADP ADP . 
YA 37 ATP C 1 501 407 ATP ATP . 
ZA 38 MG C 1 502 408 MG MG . 
AB 37 ATP D 1 501 440 ATP ATP . 
BB 38 MG D 1 502 441 MG MG . 
CB 37 ATP E 1 401 390 ATP ATP . 
DB 38 MG E 1 402 391 MG MG . 
EB 36 ADP F 1 501 440 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . AB 37 247.156 198.097 220.809 1 143.96 ? PG ATP 501 D 1 
HETATM 2 O O1G ATP . . . AB 37 246.415 198.887 219.762 1 143.96 ? O1G ATP 501 D 1 
HETATM 3 O O2G ATP . . . AB 37 246.296 197.587 221.933 1 143.96 ? O2G ATP 501 D 1 
HETATM 4 O O3G ATP . . . AB 37 248.475 198.681 221.241 1 143.96 ? O3G ATP 501 D 1 
HETATM 5 P PB ATP . . . AB 37 248.402 195.588 220.771 1 143.96 ? PB ATP 501 D 1 
HETATM 6 O O1B ATP . . . AB 37 249.737 195.495 220.081 1 143.96 ? O1B ATP 501 D 1 
HETATM 7 O O2B ATP . . . AB 37 247.477 194.412 220.856 1 143.96 ? O2B ATP 501 D 1 
HETATM 8 O O3B ATP . . . AB 37 247.576 196.757 220.047 1 143.96 ? O3B ATP 501 D 1 
HETATM 9 P PA ATP . . . AB 37 249.768 195.091 223.077 1 143.96 ? PA ATP 501 D 1 
HETATM 10 O O1A ATP . . . AB 37 249.939 193.777 222.356 1 143.96 ? O1A ATP 501 D 1 
HETATM 11 O O2A ATP . . . AB 37 250.985 195.933 223.361 1 143.96 ? O2A ATP 501 D 1 
HETATM 12 O O3A ATP . . . AB 37 248.697 195.999 222.289 1 143.96 ? O3A ATP 501 D 1 
HETATM 13 O O5' ATP . . . AB 37 249.065 194.77 224.484 1 143.96 ? O5' ATP 501 D 1 
HETATM 14 C C5' ATP . . . AB 37 248.911 195.813 225.437 1 143.96 ? C5' ATP 501 D 1 
HETATM 15 C C4' ATP . . . AB 37 249.415 195.334 226.788 1 143.96 ? C4' ATP 501 D 1 
HETATM 16 O O4' ATP . . . AB 37 248.415 194.573 227.46 1 143.96 ? O4' ATP 501 D 1 
HETATM 17 C C3' ATP . . . AB 37 250.629 194.444 226.618 1 143.96 ? C3' ATP 501 D 1 
HETATM 18 O O3' ATP . . . AB 37 251.801 195.115 227.083 1 143.96 ? O3' ATP 501 D 1 
HETATM 19 C C2' ATP . . . AB 37 250.347 193.224 227.464 1 143.96 ? C2' ATP 501 D 1 
HETATM 20 O O2' ATP . . . AB 37 251.306 193.129 228.52 1 143.96 ? O2' ATP 501 D 1 
HETATM 21 C C1' ATP . . . AB 37 248.96 193.396 228.046 1 143.96 ? C1' ATP 501 D 1 
HETATM 22 N N9 ATP . . . AB 37 248.108 192.265 227.626 1 143.96 ? N9 ATP 501 D 1 
HETATM 23 C C8 ATP . . . AB 37 247.021 192.393 226.851 1 143.96 ? C8 ATP 501 D 1 
HETATM 24 N N7 ATP . . . AB 37 246.432 191.194 226.631 1 143.96 ? N7 ATP 501 D 1 
HETATM 25 C C5 ATP . . . AB 37 247.155 190.268 227.279 1 143.96 ? C5 ATP 501 D 1 
HETATM 26 C C6 ATP . . . AB 37 247.08 188.803 227.455 1 143.96 ? C6 ATP 501 D 1 
HETATM 27 N N6 ATP . . . AB 37 246.087 188.093 226.875 1 143.96 ? N6 ATP 501 D 1 
HETATM 28 N N1 ATP . . . AB 37 248.028 188.205 228.206 1 143.96 ? N1 ATP 501 D 1 
HETATM 29 C C2 ATP . . . AB 37 249.014 188.917 228.782 1 143.96 ? C2 ATP 501 D 1 
HETATM 30 N N3 ATP . . . AB 37 249.143 190.251 228.662 1 143.96 ? N3 ATP 501 D 1 
HETATM 31 C C4 ATP . . . AB 37 248.26 190.976 227.937 1 143.96 ? C4 ATP 501 D 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    159 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#