data_6MSJ # _model_server_result.job_id UYqNtt-VZXGRwoQpwPB3Gg _model_server_result.datetime_utc '2024-10-18 16:23:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6msj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"VA","auth_seq_id":401}' # _entry.id 6MSJ # _exptl.entry_id 6MSJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 65.409 _entity.id 35 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 47-meric _pdbx_struct_assembly.oligomeric_count 47 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 35 _struct_asym.id VA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 633 U CYS 633 1_555 A SG CYS 659 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 M SG CYS 236 A CYS 236 1_555 M SG CYS 270 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 Z SG CYS 41 M CYS 41 1_555 Z SG CYS 186 M CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 NA SG CYS 41 m CYS 41 1_555 NA SG CYS 186 m CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 I NE2 HIS 112 c HIS 113 1_555 VA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc2 I NE2 HIS 114 c HIS 115 1_555 VA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc3 I OD1 ASP 125 c ASP 126 1_555 VA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc4 I OD2 ASP 125 c ASP 126 1_555 VA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc5 M OG1 THR 223 A THR 223 1_555 XA MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc6 WA O1G ATP . A ATP 434 1_555 XA MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc7 WA O1B ATP . A ATP 434 1_555 XA MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc8 N OG1 THR 233 B THR 233 1_555 ZA MG MG . B MG 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc9 YA O1G ATP . B ATP 441 1_555 ZA MG MG . B MG 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc10 AB O1G ATP . C ATP 407 1_555 BB MG MG . C MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc11 AB O2B ATP . C ATP 407 1_555 BB MG MG . C MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc12 P OG1 THR 213 D THR 213 1_555 DB MG MG . D MG 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? metalc ? metalc13 CB O3G ATP . D ATP 440 1_555 DB MG MG . D MG 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6MSJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code VA 35 ZN c 1 401 401 ZN ZN . WA 36 ATP A 1 434 434 ATP ATP . XA 37 MG A 1 435 435 MG MG . YA 36 ATP B 1 441 441 ATP ATP . ZA 37 MG B 1 442 442 MG MG . AB 36 ATP C 1 407 407 ATP ATP . BB 37 MG C 1 408 408 MG MG . CB 36 ATP D 1 440 440 ATP ATP . DB 37 MG D 1 441 441 MG MG . EB 38 ADP E 1 419 419 ADP ADP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id VA _atom_site.label_entity_id 35 _atom_site.Cartn_x 302.516 _atom_site.Cartn_y 231.22 _atom_site.Cartn_z 192.347 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 163.1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id c _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 188 _model_server_stats.parse_time_ms 149 _model_server_stats.create_model_time_ms 132 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #