data_6MSJ # _model_server_result.job_id x98GkOJUxVSyB_Ic6DS_Rw _model_server_result.datetime_utc '2024-10-18 16:20:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6msj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"WA","auth_seq_id":434}' # _entry.id 6MSJ # _exptl.entry_id 6MSJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 36 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 47-meric _pdbx_struct_assembly.oligomeric_count 47 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 36 WA N N ? 36 YA N N ? 36 AB N N ? 36 CB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 633 U CYS 633 1_555 A SG CYS 659 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 M SG CYS 236 A CYS 236 1_555 M SG CYS 270 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 Z SG CYS 41 M CYS 41 1_555 Z SG CYS 186 M CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 NA SG CYS 41 m CYS 41 1_555 NA SG CYS 186 m CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 I NE2 HIS 112 c HIS 113 1_555 VA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc2 I NE2 HIS 114 c HIS 115 1_555 VA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc3 I OD1 ASP 125 c ASP 126 1_555 VA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc4 I OD2 ASP 125 c ASP 126 1_555 VA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc5 M OG1 THR 223 A THR 223 1_555 XA MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc6 WA O1G ATP . A ATP 434 1_555 XA MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc7 WA O1B ATP . A ATP 434 1_555 XA MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc8 N OG1 THR 233 B THR 233 1_555 ZA MG MG . B MG 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc9 YA O1G ATP . B ATP 441 1_555 ZA MG MG . B MG 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc10 AB O1G ATP . C ATP 407 1_555 BB MG MG . C MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc11 AB O2B ATP . C ATP 407 1_555 BB MG MG . C MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc12 P OG1 THR 213 D THR 213 1_555 DB MG MG . D MG 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? metalc ? metalc13 CB O3G ATP . D ATP 440 1_555 DB MG MG . D MG 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6MSJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code VA 35 ZN c 1 401 401 ZN ZN . WA 36 ATP A 1 434 434 ATP ATP . XA 37 MG A 1 435 435 MG MG . YA 36 ATP B 1 441 441 ATP ATP . ZA 37 MG B 1 442 442 MG MG . AB 36 ATP C 1 407 407 ATP ATP . BB 37 MG C 1 408 408 MG MG . CB 36 ATP D 1 440 440 ATP ATP . DB 37 MG D 1 441 441 MG MG . EB 38 ADP E 1 419 419 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . WA 36 243.168 241.917 181.462 1 203.28 ? PG ATP 434 A 1 HETATM 2 O O1G ATP . . . WA 36 244.607 242.089 181.05 1 203.28 ? O1G ATP 434 A 1 HETATM 3 O O2G ATP . . . WA 36 242.767 242.703 182.683 1 203.28 ? O2G ATP 434 A 1 HETATM 4 O O3G ATP . . . WA 36 242.668 240.496 181.413 1 203.28 ? O3G ATP 434 A 1 HETATM 5 P PB ATP . . . WA 36 242.399 244.23 180.157 1 203.28 ? PB ATP 434 A 1 HETATM 6 O O1B ATP . . . WA 36 243.827 244.7 180.049 1 203.28 ? O1B ATP 434 A 1 HETATM 7 O O2B ATP . . . WA 36 241.467 244.821 181.18 1 203.28 ? O2B ATP 434 A 1 HETATM 8 O O3B ATP . . . WA 36 242.35 242.636 180.295 1 203.28 ? O3B ATP 434 A 1 HETATM 9 P PA ATP . . . WA 36 241.459 245.805 178.093 1 203.28 ? PA ATP 434 A 1 HETATM 10 O O1A ATP . . . WA 36 242.775 246.378 177.651 1 203.28 ? O1A ATP 434 A 1 HETATM 11 O O2A ATP . . . WA 36 240.595 246.567 179.059 1 203.28 ? O2A ATP 434 A 1 HETATM 12 O O3A ATP . . . WA 36 241.732 244.36 178.712 1 203.28 ? O3A ATP 434 A 1 HETATM 13 O O5' ATP . . . WA 36 240.624 245.466 176.767 1 203.28 ? O5' ATP 434 A 1 HETATM 14 C C5' ATP . . . WA 36 240.494 246.501 175.805 1 203.28 ? C5' ATP 434 A 1 HETATM 15 C C4' ATP . . . WA 36 240.064 245.995 174.439 1 203.28 ? C4' ATP 434 A 1 HETATM 16 O O4' ATP . . . WA 36 238.68 245.653 174.456 1 203.28 ? O4' ATP 434 A 1 HETATM 17 C C3' ATP . . . WA 36 240.243 247.112 173.436 1 203.28 ? C3' ATP 434 A 1 HETATM 18 O O3' ATP . . . WA 36 240.926 246.619 172.286 1 203.28 ? O3' ATP 434 A 1 HETATM 19 C C2' ATP . . . WA 36 238.855 247.538 173.039 1 203.28 ? C2' ATP 434 A 1 HETATM 20 O O2' ATP . . . WA 36 238.706 247.356 171.632 1 203.28 ? O2' ATP 434 A 1 HETATM 21 C C1' ATP . . . WA 36 237.894 246.622 173.77 1 203.28 ? C1' ATP 434 A 1 HETATM 22 N N9 ATP . . . WA 36 237.138 247.293 174.854 1 203.28 ? N9 ATP 434 A 1 HETATM 23 C C8 ATP . . . WA 36 236.925 246.688 176.031 1 203.28 ? C8 ATP 434 A 1 HETATM 24 N N7 ATP . . . WA 36 236.205 247.462 176.868 1 203.28 ? N7 ATP 434 A 1 HETATM 25 C C5 ATP . . . WA 36 235.943 248.602 176.219 1 203.28 ? C5 ATP 434 A 1 HETATM 26 C C6 ATP . . . WA 36 235.221 249.843 176.548 1 203.28 ? C6 ATP 434 A 1 HETATM 27 N N6 ATP . . . WA 36 234.641 249.996 177.759 1 203.28 ? N6 ATP 434 A 1 HETATM 28 N N1 ATP . . . WA 36 235.161 250.809 175.612 1 203.28 ? N1 ATP 434 A 1 HETATM 29 C C2 ATP . . . WA 36 235.735 250.65 174.412 1 203.28 ? C2 ATP 434 A 1 HETATM 30 N N3 ATP . . . WA 36 236.404 249.548 174.047 1 203.28 ? N3 ATP 434 A 1 HETATM 31 C C4 ATP . . . WA 36 236.54 248.491 174.884 1 203.28 ? C4 ATP 434 A 1 # _model_server_stats.io_time_ms 185 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 137 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #