data_6MSK # _model_server_result.job_id B7tiIl95lfKE3LG4ruud-g _model_server_result.datetime_utc '2024-10-18 16:23:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6msk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":501}' # _entry.id 6MSK # _exptl.entry_id 6MSK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 35 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 47-meric _pdbx_struct_assembly.oligomeric_count 47 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 35 WA N N ? 35 YA N N ? 35 AB N N ? 35 EB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 633 U CYS 633 1_555 A SG CYS 659 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 M SG CYS 236 A CYS 236 1_555 M SG CYS 270 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 Z SG CYS 41 M CYS 41 1_555 Z SG CYS 186 M CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 NA SG CYS 41 m CYS 41 1_555 NA SG CYS 186 m CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 I NE2 HIS 112 c HIS 113 1_555 VA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc2 I NE2 HIS 114 c HIS 115 1_555 VA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? metalc ? metalc3 I OD1 ASP 125 c ASP 126 1_555 VA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc4 I OD2 ASP 125 c ASP 126 1_555 VA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc5 M OG1 THR 223 A THR 223 1_555 XA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.749 ? metalc ? metalc6 N OG1 THR 233 B THR 233 1_555 ZA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc7 O OG1 THR 189 C THR 197 1_555 BB MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc8 P OG1 THR 213 D THR 213 1_555 DB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? metalc ? metalc9 R OG1 THR 234 F THR 234 1_555 FB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? metalc ? metalc10 WA O2G ATP . A ATP 501 1_555 XA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? metalc ? metalc11 WA O1B ATP . A ATP 501 1_555 XA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc12 YA O2G ATP . B ATP 501 1_555 ZA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc13 YA O2B ATP . B ATP 501 1_555 ZA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc14 AB O3B ATP . C ATP 501 1_555 BB MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc15 CB O1B ADP . D ADP 501 1_555 DB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc16 CB O1A ADP . D ADP 501 1_555 DB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc17 EB O3G ATP . F ATP 501 1_555 FB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc18 EB O2B ATP . F ATP 501 1_555 FB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6MSK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code VA 34 ZN c 1 401 401 ZN ZN . WA 35 ATP A 1 501 434 ATP ATP . XA 36 MG A 1 502 435 MG MG . YA 35 ATP B 1 501 441 ATP ATP . ZA 36 MG B 1 502 442 MG MG . AB 35 ATP C 1 501 407 ATP ATP . BB 36 MG C 1 502 408 MG MG . CB 37 ADP D 1 501 419 ADP ADP . DB 36 MG D 1 502 420 MG MG . EB 35 ATP F 1 501 440 ATP ATP . FB 36 MG F 1 502 441 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . YA 35 239.673 211.903 171.893 1 162.17 ? PG ATP 501 B 1 HETATM 2 O O1G ATP . . . YA 35 238.779 213.114 171.952 1 162.17 ? O1G ATP 501 B 1 HETATM 3 O O2G ATP . . . YA 35 241.135 212.172 172.147 1 162.17 ? O2G ATP 501 B 1 HETATM 4 O O3G ATP . . . YA 35 239.141 210.684 172.6 1 162.17 ? O3G ATP 501 B 1 HETATM 5 P PB ATP . . . YA 35 239.998 212.455 169.144 1 162.17 ? PB ATP 501 B 1 HETATM 6 O O1B ATP . . . YA 35 238.734 213.038 168.568 1 162.17 ? O1B ATP 501 B 1 HETATM 7 O O2B ATP . . . YA 35 241.119 213.371 169.565 1 162.17 ? O2B ATP 501 B 1 HETATM 8 O O3B ATP . . . YA 35 239.594 211.476 170.35 1 162.17 ? O3B ATP 501 B 1 HETATM 9 P PA ATP . . . YA 35 240.11 211.192 166.636 1 162.17 ? PA ATP 501 B 1 HETATM 10 O O1A ATP . . . YA 35 240.785 212.253 165.808 1 162.17 ? O1A ATP 501 B 1 HETATM 11 O O2A ATP . . . YA 35 238.614 211.011 166.586 1 162.17 ? O2A ATP 501 B 1 HETATM 12 O O3A ATP . . . YA 35 240.596 211.348 168.153 1 162.17 ? O3A ATP 501 B 1 HETATM 13 O O5' ATP . . . YA 35 240.753 209.771 166.268 1 162.17 ? O5' ATP 501 B 1 HETATM 14 C C5' ATP . . . YA 35 241.319 209.585 164.983 1 162.17 ? C5' ATP 501 B 1 HETATM 15 C C4' ATP . . . YA 35 241.07 208.174 164.482 1 162.17 ? C4' ATP 501 B 1 HETATM 16 O O4' ATP . . . YA 35 239.681 208.009 164.198 1 162.17 ? O4' ATP 501 B 1 HETATM 17 C C3' ATP . . . YA 35 241.835 207.964 163.194 1 162.17 ? C3' ATP 501 B 1 HETATM 18 O O3' ATP . . . YA 35 242.649 206.796 163.303 1 162.17 ? O3' ATP 501 B 1 HETATM 19 C C2' ATP . . . YA 35 240.786 207.766 162.126 1 162.17 ? C2' ATP 501 B 1 HETATM 20 O O2' ATP . . . YA 35 241.061 206.586 161.371 1 162.17 ? O2' ATP 501 B 1 HETATM 21 C C1' ATP . . . YA 35 239.449 207.643 162.837 1 162.17 ? C1' ATP 501 B 1 HETATM 22 N N9 ATP . . . YA 35 238.429 208.587 162.315 1 162.17 ? N9 ATP 501 B 1 HETATM 23 C C8 ATP . . . YA 35 237.64 209.312 163.124 1 162.17 ? C8 ATP 501 B 1 HETATM 24 N N7 ATP . . . YA 35 236.785 210.09 162.423 1 162.17 ? N7 ATP 501 B 1 HETATM 25 C C5 ATP . . . YA 35 237.017 209.862 161.124 1 162.17 ? C5 ATP 501 B 1 HETATM 26 C C6 ATP . . . YA 35 236.456 210.362 159.855 1 162.17 ? C6 ATP 501 B 1 HETATM 27 N N6 ATP . . . YA 35 235.462 211.278 159.847 1 162.17 ? N6 ATP 501 B 1 HETATM 28 N N1 ATP . . . YA 35 236.964 209.882 158.705 1 162.17 ? N1 ATP 501 B 1 HETATM 29 C C2 ATP . . . YA 35 237.953 208.976 158.701 1 162.17 ? C2 ATP 501 B 1 HETATM 30 N N3 ATP . . . YA 35 238.505 208.477 159.817 1 162.17 ? N3 ATP 501 B 1 HETATM 31 C C4 ATP . . . YA 35 238.091 208.862 161.047 1 162.17 ? C4 ATP 501 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 139 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #