data_6MTA # _model_server_result.job_id oFJjsnEr7iD7PKt21fai0Q _model_server_result.datetime_utc '2025-01-10 13:27:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mta # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 6MTA # _exptl.entry_id 6MTA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.891 _cell.angle_gamma 90 _cell.entry_id 6MTA _cell.length_a 67.32 _cell.length_b 83.572 _cell.length_c 84.841 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MTA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 2 1 C,H,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc3 D O1G GNP . A GNP 201 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc4 D O1B GNP . A GNP 201 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc5 E MG MG . A MG 202 1_555 J O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc6 E MG MG . A MG 202 1_555 J O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc7 B OG SER 17 B SER 17 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc8 B OG1 THR 35 B THR 35 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc9 F O3G GNP . B GNP 201 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc10 F O2B GNP . B GNP 201 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc11 G MG MG . B MG 202 1_555 K O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc12 G MG MG . B MG 202 1_555 K O HOH . B HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc13 C OG SER 17 C SER 17 1_555 I MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc14 H O2G GNP . C GNP 201 1_555 I MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc15 H O2B GNP . C GNP 201 1_555 I MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc16 I MG MG . C MG 202 1_555 L O HOH . C HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc17 I MG MG . C MG 202 1_555 L O HOH . C HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 6MTA _atom_sites.fract_transf_matrix[1][1] 0.014854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005375 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GNP A 1 201 1 GNP GNP . E 3 MG A 1 202 1 MG MG . F 2 GNP B 1 201 2 GNP GNP . G 3 MG B 1 202 2 MG MG . H 2 GNP C 1 201 3 GNP GNP . I 3 MG C 1 202 3 MG MG . J 4 HOH A 1 301 56 HOH HOH . J 4 HOH A 2 302 66 HOH HOH . J 4 HOH A 3 303 70 HOH HOH . J 4 HOH A 4 304 41 HOH HOH . J 4 HOH A 5 305 63 HOH HOH . J 4 HOH A 6 306 16 HOH HOH . J 4 HOH A 7 307 92 HOH HOH . J 4 HOH A 8 308 3 HOH HOH . J 4 HOH A 9 309 119 HOH HOH . J 4 HOH A 10 310 4 HOH HOH . J 4 HOH A 11 311 122 HOH HOH . J 4 HOH A 12 312 74 HOH HOH . J 4 HOH A 13 313 116 HOH HOH . J 4 HOH A 14 314 117 HOH HOH . J 4 HOH A 15 315 82 HOH HOH . J 4 HOH A 16 316 13 HOH HOH . J 4 HOH A 17 317 91 HOH HOH . J 4 HOH A 18 318 110 HOH HOH . J 4 HOH A 19 319 22 HOH HOH . J 4 HOH A 20 320 109 HOH HOH . J 4 HOH A 21 321 76 HOH HOH . J 4 HOH A 22 322 64 HOH HOH . J 4 HOH A 23 323 84 HOH HOH . J 4 HOH A 24 324 85 HOH HOH . J 4 HOH A 25 325 17 HOH HOH . J 4 HOH A 26 326 11 HOH HOH . J 4 HOH A 27 327 121 HOH HOH . J 4 HOH A 28 328 60 HOH HOH . J 4 HOH A 29 329 93 HOH HOH . J 4 HOH A 30 330 5 HOH HOH . J 4 HOH A 31 331 113 HOH HOH . J 4 HOH A 32 332 24 HOH HOH . J 4 HOH A 33 333 18 HOH HOH . J 4 HOH A 34 334 20 HOH HOH . J 4 HOH A 35 335 68 HOH HOH . J 4 HOH A 36 336 15 HOH HOH . J 4 HOH A 37 337 54 HOH HOH . J 4 HOH A 38 338 23 HOH HOH . J 4 HOH A 39 339 25 HOH HOH . J 4 HOH A 40 340 37 HOH HOH . J 4 HOH A 41 341 52 HOH HOH . J 4 HOH A 42 342 80 HOH HOH . J 4 HOH A 43 343 106 HOH HOH . J 4 HOH A 44 344 115 HOH HOH . J 4 HOH A 45 345 47 HOH HOH . J 4 HOH A 46 346 123 HOH HOH . J 4 HOH A 47 347 112 HOH HOH . J 4 HOH A 48 348 94 HOH HOH . J 4 HOH A 49 349 120 HOH HOH . J 4 HOH A 50 350 100 HOH HOH . K 4 HOH B 1 301 129 HOH HOH . K 4 HOH B 2 302 99 HOH HOH . K 4 HOH B 3 303 6 HOH HOH . K 4 HOH B 4 304 59 HOH HOH . K 4 HOH B 5 305 104 HOH HOH . K 4 HOH B 6 306 75 HOH HOH . K 4 HOH B 7 307 57 HOH HOH . K 4 HOH B 8 308 19 HOH HOH . K 4 HOH B 9 309 81 HOH HOH . K 4 HOH B 10 310 95 HOH HOH . K 4 HOH B 11 311 49 HOH HOH . K 4 HOH B 12 312 105 HOH HOH . K 4 HOH B 13 313 27 HOH HOH . K 4 HOH B 14 314 102 HOH HOH . K 4 HOH B 15 315 10 HOH HOH . K 4 HOH B 16 316 36 HOH HOH . K 4 HOH B 17 317 28 HOH HOH . K 4 HOH B 18 318 43 HOH HOH . K 4 HOH B 19 319 21 HOH HOH . K 4 HOH B 20 320 51 HOH HOH . K 4 HOH B 21 321 44 HOH HOH . K 4 HOH B 22 322 26 HOH HOH . K 4 HOH B 23 323 9 HOH HOH . K 4 HOH B 24 324 62 HOH HOH . K 4 HOH B 25 325 45 HOH HOH . K 4 HOH B 26 326 107 HOH HOH . K 4 HOH B 27 327 69 HOH HOH . K 4 HOH B 28 328 67 HOH HOH . K 4 HOH B 29 329 1 HOH HOH . K 4 HOH B 30 330 31 HOH HOH . K 4 HOH B 31 331 114 HOH HOH . K 4 HOH B 32 332 79 HOH HOH . K 4 HOH B 33 333 77 HOH HOH . K 4 HOH B 34 334 65 HOH HOH . K 4 HOH B 35 335 50 HOH HOH . K 4 HOH B 36 336 96 HOH HOH . K 4 HOH B 37 337 126 HOH HOH . K 4 HOH B 38 338 72 HOH HOH . K 4 HOH B 39 339 86 HOH HOH . K 4 HOH B 40 340 127 HOH HOH . K 4 HOH B 41 341 88 HOH HOH . K 4 HOH B 42 342 46 HOH HOH . K 4 HOH B 43 343 29 HOH HOH . K 4 HOH B 44 344 35 HOH HOH . K 4 HOH B 45 345 97 HOH HOH . K 4 HOH B 46 346 128 HOH HOH . L 4 HOH C 1 301 103 HOH HOH . L 4 HOH C 2 302 111 HOH HOH . L 4 HOH C 3 303 89 HOH HOH . L 4 HOH C 4 304 78 HOH HOH . L 4 HOH C 5 305 71 HOH HOH . L 4 HOH C 6 306 14 HOH HOH . L 4 HOH C 7 307 34 HOH HOH . L 4 HOH C 8 308 7 HOH HOH . L 4 HOH C 9 309 30 HOH HOH . L 4 HOH C 10 310 61 HOH HOH . L 4 HOH C 11 311 40 HOH HOH . L 4 HOH C 12 312 108 HOH HOH . L 4 HOH C 13 313 2 HOH HOH . L 4 HOH C 14 314 53 HOH HOH . L 4 HOH C 15 315 32 HOH HOH . L 4 HOH C 16 316 33 HOH HOH . L 4 HOH C 17 317 58 HOH HOH . L 4 HOH C 18 318 101 HOH HOH . L 4 HOH C 19 319 98 HOH HOH . L 4 HOH C 20 320 39 HOH HOH . L 4 HOH C 21 321 38 HOH HOH . L 4 HOH C 22 322 125 HOH HOH . L 4 HOH C 23 323 55 HOH HOH . L 4 HOH C 24 324 42 HOH HOH . L 4 HOH C 25 325 12 HOH HOH . L 4 HOH C 26 326 73 HOH HOH . L 4 HOH C 27 327 90 HOH HOH . L 4 HOH C 28 328 118 HOH HOH . L 4 HOH C 29 329 124 HOH HOH . L 4 HOH C 30 330 8 HOH HOH . L 4 HOH C 31 331 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . F 2 45.984 -7.985 26.755 1 27.07 ? PG GNP 201 B 1 HETATM 2 O O1G GNP . . . F 2 45.341 -8.826 25.589 1 26.47 ? O1G GNP 201 B 1 HETATM 3 O O2G GNP . . . F 2 45.655 -8.715 28.126 1 27.18 ? O2G GNP 201 B 1 HETATM 4 O O3G GNP . . . F 2 45.397 -6.654 26.755 1 29.21 ? O3G GNP 201 B 1 HETATM 5 N N3B GNP . . . F 2 47.598 -7.955 26.547 1 27.69 ? N3B GNP 201 B 1 HETATM 6 P PB GNP . . . F 2 48.479 -7.116 25.464 1 24.3 ? PB GNP 201 B 1 HETATM 7 O O1B GNP . . . F 2 48.464 -7.734 24.147 1 25.76 ? O1B GNP 201 B 1 HETATM 8 O O2B GNP . . . F 2 47.881 -5.651 25.332 1 24.26 ? O2B GNP 201 B 1 HETATM 9 O O3A GNP . . . F 2 49.969 -6.959 26.053 1 27.07 ? O3A GNP 201 B 1 HETATM 10 P PA GNP . . . F 2 50.703 -5.794 26.849 1 28.04 ? PA GNP 201 B 1 HETATM 11 O O1A GNP . . . F 2 50.878 -4.581 26.019 1 29.46 ? O1A GNP 201 B 1 HETATM 12 O O2A GNP . . . F 2 49.919 -5.57 28.147 1 27.77 ? O2A GNP 201 B 1 HETATM 13 O O5' GNP . . . F 2 52.125 -6.448 27.253 1 26.47 ? O5' GNP 201 B 1 HETATM 14 C C5' GNP . . . F 2 52.187 -7.579 28.147 1 25.73 ? C5' GNP 201 B 1 HETATM 15 C C4' GNP . . . F 2 53.555 -7.624 28.78 1 24.75 ? C4' GNP 201 B 1 HETATM 16 O O4' GNP . . . F 2 54.561 -7.782 27.754 1 24.11 ? O4' GNP 201 B 1 HETATM 17 C C3' GNP . . . F 2 53.952 -6.383 29.582 1 26.56 ? C3' GNP 201 B 1 HETATM 18 O O3' GNP . . . F 2 54.696 -6.735 30.742 1 29.07 ? O3' GNP 201 B 1 HETATM 19 C C2' GNP . . . F 2 54.793 -5.585 28.583 1 26.51 ? C2' GNP 201 B 1 HETATM 20 O O2' GNP . . . F 2 55.753 -4.764 29.238 1 28.58 ? O2' GNP 201 B 1 HETATM 21 C C1' GNP . . . F 2 55.479 -6.706 27.8 1 23.56 ? C1' GNP 201 B 1 HETATM 22 N N9 GNP . . . F 2 55.813 -6.328 26.418 1 18.97 ? N9 GNP 201 B 1 HETATM 23 C C8 GNP . . . F 2 54.95 -5.874 25.454 1 17.41 ? C8 GNP 201 B 1 HETATM 24 N N7 GNP . . . F 2 55.542 -5.603 24.315 1 16.78 ? N7 GNP 201 B 1 HETATM 25 C C5 GNP . . . F 2 56.876 -5.898 24.543 1 18.63 ? C5 GNP 201 B 1 HETATM 26 C C6 GNP . . . F 2 58.019 -5.811 23.686 1 18.42 ? C6 GNP 201 B 1 HETATM 27 O O6 GNP . . . F 2 58.045 -5.437 22.514 1 18.71 ? O6 GNP 201 B 1 HETATM 28 N N1 GNP . . . F 2 59.177 -6.213 24.321 1 19.23 ? N1 GNP 201 B 1 HETATM 29 C C2 GNP . . . F 2 59.256 -6.65 25.617 1 20.55 ? C2 GNP 201 B 1 HETATM 30 N N2 GNP . . . F 2 60.463 -6.999 26.065 1 19.78 ? N2 GNP 201 B 1 HETATM 31 N N3 GNP . . . F 2 58.203 -6.737 26.426 1 21 ? N3 GNP 201 B 1 HETATM 32 C C4 GNP . . . F 2 57.057 -6.348 25.834 1 19.6 ? C4 GNP 201 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #