data_6MV1 # _model_server_result.job_id xoDmVTa9QRKX03bZwAMMFg _model_server_result.datetime_utc '2025-02-05 12:02:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6MV1 # _exptl.entry_id 6MV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.51 _cell.angle_gamma 90 _cell.entry_id 6MV1 _cell.length_a 56.137 _cell.length_b 68.628 _cell.length_c 57.598 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 6MV1 _atom_sites.fract_transf_matrix[1][1] 0.017814 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002348 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 1 FAD FAD . C 3 NAD A 1 602 1 NAD NAD . D 4 HOH A 1 701 32 HOH HOH . D 4 HOH A 2 702 69 HOH HOH . D 4 HOH A 3 703 86 HOH HOH . D 4 HOH A 4 704 4 HOH HOH . D 4 HOH A 5 705 12 HOH HOH . D 4 HOH A 6 706 84 HOH HOH . D 4 HOH A 7 707 117 HOH HOH . D 4 HOH A 8 708 106 HOH HOH . D 4 HOH A 9 709 8 HOH HOH . D 4 HOH A 10 710 41 HOH HOH . D 4 HOH A 11 711 10 HOH HOH . D 4 HOH A 12 712 20 HOH HOH . D 4 HOH A 13 713 27 HOH HOH . D 4 HOH A 14 714 14 HOH HOH . D 4 HOH A 15 715 49 HOH HOH . D 4 HOH A 16 716 130 HOH HOH . D 4 HOH A 17 717 40 HOH HOH . D 4 HOH A 18 718 16 HOH HOH . D 4 HOH A 19 719 122 HOH HOH . D 4 HOH A 20 720 100 HOH HOH . D 4 HOH A 21 721 2 HOH HOH . D 4 HOH A 22 722 68 HOH HOH . D 4 HOH A 23 723 70 HOH HOH . D 4 HOH A 24 724 1 HOH HOH . D 4 HOH A 25 725 44 HOH HOH . D 4 HOH A 26 726 116 HOH HOH . D 4 HOH A 27 727 59 HOH HOH . D 4 HOH A 28 728 124 HOH HOH . D 4 HOH A 29 729 22 HOH HOH . D 4 HOH A 30 730 53 HOH HOH . D 4 HOH A 31 731 65 HOH HOH . D 4 HOH A 32 732 105 HOH HOH . D 4 HOH A 33 733 51 HOH HOH . D 4 HOH A 34 734 33 HOH HOH . D 4 HOH A 35 735 120 HOH HOH . D 4 HOH A 36 736 38 HOH HOH . D 4 HOH A 37 737 42 HOH HOH . D 4 HOH A 38 738 46 HOH HOH . D 4 HOH A 39 739 45 HOH HOH . D 4 HOH A 40 740 99 HOH HOH . D 4 HOH A 41 741 57 HOH HOH . D 4 HOH A 42 742 37 HOH HOH . D 4 HOH A 43 743 34 HOH HOH . D 4 HOH A 44 744 81 HOH HOH . D 4 HOH A 45 745 7 HOH HOH . D 4 HOH A 46 746 52 HOH HOH . D 4 HOH A 47 747 108 HOH HOH . D 4 HOH A 48 748 6 HOH HOH . D 4 HOH A 49 749 26 HOH HOH . D 4 HOH A 50 750 115 HOH HOH . D 4 HOH A 51 751 61 HOH HOH . D 4 HOH A 52 752 89 HOH HOH . D 4 HOH A 53 753 15 HOH HOH . D 4 HOH A 54 754 13 HOH HOH . D 4 HOH A 55 755 19 HOH HOH . D 4 HOH A 56 756 118 HOH HOH . D 4 HOH A 57 757 110 HOH HOH . D 4 HOH A 58 758 5 HOH HOH . D 4 HOH A 59 759 3 HOH HOH . D 4 HOH A 60 760 54 HOH HOH . D 4 HOH A 61 761 39 HOH HOH . D 4 HOH A 62 762 50 HOH HOH . D 4 HOH A 63 763 18 HOH HOH . D 4 HOH A 64 764 23 HOH HOH . D 4 HOH A 65 765 87 HOH HOH . D 4 HOH A 66 766 24 HOH HOH . D 4 HOH A 67 767 17 HOH HOH . D 4 HOH A 68 768 121 HOH HOH . D 4 HOH A 69 769 9 HOH HOH . D 4 HOH A 70 770 36 HOH HOH . D 4 HOH A 71 771 25 HOH HOH . D 4 HOH A 72 772 111 HOH HOH . D 4 HOH A 73 773 79 HOH HOH . D 4 HOH A 74 774 127 HOH HOH . D 4 HOH A 75 775 77 HOH HOH . D 4 HOH A 76 776 75 HOH HOH . D 4 HOH A 77 777 30 HOH HOH . D 4 HOH A 78 778 31 HOH HOH . D 4 HOH A 79 779 119 HOH HOH . D 4 HOH A 80 780 63 HOH HOH . D 4 HOH A 81 781 43 HOH HOH . D 4 HOH A 82 782 76 HOH HOH . D 4 HOH A 83 783 92 HOH HOH . D 4 HOH A 84 784 88 HOH HOH . D 4 HOH A 85 785 114 HOH HOH . D 4 HOH A 86 786 28 HOH HOH . D 4 HOH A 87 787 35 HOH HOH . D 4 HOH A 88 788 62 HOH HOH . D 4 HOH A 89 789 47 HOH HOH . D 4 HOH A 90 790 29 HOH HOH . D 4 HOH A 91 791 67 HOH HOH . D 4 HOH A 92 792 21 HOH HOH . D 4 HOH A 93 793 48 HOH HOH . D 4 HOH A 94 794 101 HOH HOH . D 4 HOH A 95 795 60 HOH HOH . D 4 HOH A 96 796 93 HOH HOH . D 4 HOH A 97 797 85 HOH HOH . D 4 HOH A 98 798 82 HOH HOH . D 4 HOH A 99 799 102 HOH HOH . D 4 HOH A 100 800 125 HOH HOH . D 4 HOH A 101 801 64 HOH HOH . D 4 HOH A 102 802 104 HOH HOH . D 4 HOH A 103 803 95 HOH HOH . D 4 HOH A 104 804 74 HOH HOH . D 4 HOH A 105 805 126 HOH HOH . D 4 HOH A 106 806 90 HOH HOH . D 4 HOH A 107 807 109 HOH HOH . D 4 HOH A 108 808 123 HOH HOH . D 4 HOH A 109 809 80 HOH HOH . D 4 HOH A 110 810 78 HOH HOH . D 4 HOH A 111 811 11 HOH HOH . D 4 HOH A 112 812 128 HOH HOH . D 4 HOH A 113 813 112 HOH HOH . D 4 HOH A 114 814 55 HOH HOH . D 4 HOH A 115 815 107 HOH HOH . D 4 HOH A 116 816 97 HOH HOH . D 4 HOH A 117 817 113 HOH HOH . D 4 HOH A 118 818 96 HOH HOH . D 4 HOH A 119 819 132 HOH HOH . D 4 HOH A 120 820 58 HOH HOH . D 4 HOH A 121 821 91 HOH HOH . D 4 HOH A 122 822 131 HOH HOH . D 4 HOH A 123 823 129 HOH HOH . D 4 HOH A 124 824 71 HOH HOH . D 4 HOH A 125 825 98 HOH HOH . D 4 HOH A 126 826 83 HOH HOH . D 4 HOH A 127 827 103 HOH HOH . D 4 HOH A 128 828 66 HOH HOH . D 4 HOH A 129 829 56 HOH HOH . D 4 HOH A 130 830 94 HOH HOH . D 4 HOH A 131 831 72 HOH HOH . D 4 HOH A 132 832 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 59.988 9.072 -2.917 1 32.08 ? PA FAD 601 A 1 HETATM 2 O O1A FAD . . . B 2 61.278 9.804 -3.155 1 32.98 ? O1A FAD 601 A 1 HETATM 3 O O2A FAD . . . B 2 59.116 9.92 -2.055 1 35.33 ? O2A FAD 601 A 1 HETATM 4 O O5B FAD . . . B 2 59.28 8.759 -4.292 1 38.69 ? O5B FAD 601 A 1 HETATM 5 C C5B FAD . . . B 2 59.407 7.496 -4.93 1 37.93 ? C5B FAD 601 A 1 HETATM 6 C C4B FAD . . . B 2 58.792 7.556 -6.322 1 44.25 ? C4B FAD 601 A 1 HETATM 7 O O4B FAD . . . B 2 57.368 7.599 -6.234 1 49.47 ? O4B FAD 601 A 1 HETATM 8 C C3B FAD . . . B 2 59.202 8.8 -7.111 1 41.34 ? C3B FAD 601 A 1 HETATM 9 O O3B FAD . . . B 2 60.388 8.619 -7.891 1 46.95 ? O3B FAD 601 A 1 HETATM 10 C C2B FAD . . . B 2 58.039 8.99 -8.031 1 48.71 ? C2B FAD 601 A 1 HETATM 11 O O2B FAD . . . B 2 58.279 8.155 -9.179 1 51.38 ? O2B FAD 601 A 1 HETATM 12 C C1B FAD . . . B 2 56.86 8.546 -7.179 1 53.33 ? C1B FAD 601 A 1 HETATM 13 N N9A FAD . . . B 2 56.287 9.717 -6.453 1 50.23 ? N9A FAD 601 A 1 HETATM 14 C C8A FAD . . . B 2 56.813 10.347 -5.38 1 51.9 ? C8A FAD 601 A 1 HETATM 15 N N7A FAD . . . B 2 56.037 11.381 -4.97 1 54.25 ? N7A FAD 601 A 1 HETATM 16 C C5A FAD . . . B 2 54.978 11.415 -5.797 1 58.08 ? C5A FAD 601 A 1 HETATM 17 C C6A FAD . . . B 2 53.776 12.26 -5.928 1 53.76 ? C6A FAD 601 A 1 HETATM 18 N N6A FAD . . . B 2 53.558 13.278 -5.063 1 58.95 ? N6A FAD 601 A 1 HETATM 19 N N1A FAD . . . B 2 52.923 11.974 -6.933 1 62.85 ? N1A FAD 601 A 1 HETATM 20 C C2A FAD . . . B 2 53.139 10.959 -7.8 1 66.69 ? C2A FAD 601 A 1 HETATM 21 N N3A FAD . . . B 2 54.213 10.152 -7.734 1 60.5 ? N3A FAD 601 A 1 HETATM 22 C C4A FAD . . . B 2 55.149 10.325 -6.771 1 53.1 ? C4A FAD 601 A 1 HETATM 23 N N1 FAD . . . B 2 55.179 2.824 2.572 1 26.36 ? N1 FAD 601 A 1 HETATM 24 C C2 FAD . . . B 2 55.453 1.51 2.741 1 27.49 ? C2 FAD 601 A 1 HETATM 25 O O2 FAD . . . B 2 56.135 0.899 1.874 1 27.51 ? O2 FAD 601 A 1 HETATM 26 N N3 FAD . . . B 2 55.021 0.834 3.811 1 26.82 ? N3 FAD 601 A 1 HETATM 27 C C4 FAD . . . B 2 54.304 1.395 4.784 1 24.47 ? C4 FAD 601 A 1 HETATM 28 O O4 FAD . . . B 2 53.928 0.724 5.749 1 24.26 ? O4 FAD 601 A 1 HETATM 29 C C4X FAD . . . B 2 53.961 2.816 4.672 1 28.39 ? C4X FAD 601 A 1 HETATM 30 N N5 FAD . . . B 2 53.224 3.439 5.604 1 28.39 ? N5 FAD 601 A 1 HETATM 31 C C5X FAD . . . B 2 52.945 4.754 5.426 1 35.41 ? C5X FAD 601 A 1 HETATM 32 C C6 FAD . . . B 2 52.187 5.395 6.406 1 30.61 ? C6 FAD 601 A 1 HETATM 33 C C7 FAD . . . B 2 51.869 6.738 6.268 1 35.44 ? C7 FAD 601 A 1 HETATM 34 C C7M FAD . . . B 2 51.051 7.429 7.334 1 37.8 ? C7M FAD 601 A 1 HETATM 35 C C8 FAD . . . B 2 52.332 7.486 5.069 1 36.01 ? C8 FAD 601 A 1 HETATM 36 C C8M FAD . . . B 2 52.025 8.942 4.889 1 34.31 ? C8M FAD 601 A 1 HETATM 37 C C9 FAD . . . B 2 53.096 6.861 4.092 1 32.94 ? C9 FAD 601 A 1 HETATM 38 C C9A FAD . . . B 2 53.424 5.516 4.219 1 28.72 ? C9A FAD 601 A 1 HETATM 39 N N10 FAD . . . B 2 54.19 4.859 3.239 1 26.61 ? N10 FAD 601 A 1 HETATM 40 C C10 FAD . . . B 2 54.452 3.512 3.454 1 26.34 ? C10 FAD 601 A 1 HETATM 41 C C1' FAD . . . B 2 54.772 5.502 2.052 1 28.63 ? C1' FAD 601 A 1 HETATM 42 C C2' FAD . . . B 2 56.192 5.819 2.538 1 27.98 ? C2' FAD 601 A 1 HETATM 43 O O2' FAD . . . B 2 56.118 6.661 3.677 1 23.78 ? O2' FAD 601 A 1 HETATM 44 C C3' FAD . . . B 2 57.119 6.564 1.569 1 30.22 ? C3' FAD 601 A 1 HETATM 45 O O3' FAD . . . B 2 56.403 7.648 0.974 1 28.24 ? O3' FAD 601 A 1 HETATM 46 C C4' FAD . . . B 2 57.669 5.594 0.536 1 31.77 ? C4' FAD 601 A 1 HETATM 47 O O4' FAD . . . B 2 58.516 4.659 1.206 1 25.93 ? O4' FAD 601 A 1 HETATM 48 C C5' FAD . . . B 2 58.471 6.287 -0.549 1 28.87 ? C5' FAD 601 A 1 HETATM 49 O O5' FAD . . . B 2 59.527 7.026 0.029 1 26.39 ? O5' FAD 601 A 1 HETATM 50 P P FAD . . . B 2 60.821 7.238 -0.862 1 28.39 ? P FAD 601 A 1 HETATM 51 O O1P FAD . . . B 2 61.72 8.302 -0.312 1 26.87 ? O1P FAD 601 A 1 HETATM 52 O O2P FAD . . . B 2 61.535 5.912 -0.98 1 24.55 ? O2P FAD 601 A 1 HETATM 53 O O3P FAD . . . B 2 60.282 7.609 -2.334 1 35.04 ? O3P FAD 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #