data_6MV1 # _model_server_result.job_id TjTdTSlwNp9VTkDH2eCZZQ _model_server_result.datetime_utc '2024-10-19 17:19:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6MV1 # _exptl.entry_id 6MV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.51 _cell.angle_gamma 90 _cell.entry_id 6MV1 _cell.length_a 56.137 _cell.length_b 68.628 _cell.length_c 57.598 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 328 n n PA O2A NAD sing 329 n n PA O5B NAD sing 330 n n PA O3 NAD sing 331 n n O2A HOA2 NAD sing 332 n n O5B C5B NAD sing 333 n n C5B C4B NAD sing 334 n n C5B H51A NAD sing 335 n n C5B H52A NAD sing 336 n n C4B O4B NAD sing 337 n n C4B C3B NAD sing 338 n n C4B H4B NAD sing 339 n n O4B C1B NAD sing 340 n n C3B O3B NAD sing 341 n n C3B C2B NAD sing 342 n n C3B H3B NAD sing 343 n n O3B HO3A NAD sing 344 n n C2B O2B NAD sing 345 n n C2B C1B NAD sing 346 n n C2B H2B NAD sing 347 n n O2B HO2A NAD sing 348 n n C1B N9A NAD sing 349 n n C1B H1B NAD sing 350 n n N9A C8A NAD sing 351 n y N9A C4A NAD sing 352 n y C8A N7A NAD doub 353 n y C8A H8A NAD sing 354 n n N7A C5A NAD sing 355 n y C5A C6A NAD sing 356 n y C5A C4A NAD doub 357 n y C6A N6A NAD sing 358 n n C6A N1A NAD doub 359 n y N6A H61A NAD sing 360 n n N6A H62A NAD sing 361 n n N1A C2A NAD sing 362 n y C2A N3A NAD doub 363 n y C2A H2A NAD sing 364 n n N3A C4A NAD sing 365 n y O3 PN NAD sing 366 n n PN O1N NAD doub 367 n n PN O2N NAD sing 368 n n PN O5D NAD sing 369 n n O5D C5D NAD sing 370 n n C5D C4D NAD sing 371 n n C5D H51N NAD sing 372 n n C5D H52N NAD sing 373 n n C4D O4D NAD sing 374 n n C4D C3D NAD sing 375 n n C4D H4D NAD sing 376 n n O4D C1D NAD sing 377 n n C3D O3D NAD sing 378 n n C3D C2D NAD sing 379 n n C3D H3D NAD sing 380 n n O3D HO3N NAD sing 381 n n C2D O2D NAD sing 382 n n C2D C1D NAD sing 383 n n C2D H2D NAD sing 384 n n O2D HO2N NAD sing 385 n n C1D N1N NAD sing 386 n n C1D H1D NAD sing 387 n n N1N C2N NAD sing 388 n y N1N C6N NAD doub 389 n y C2N C3N NAD doub 390 n y C2N H2N NAD sing 391 n n C3N C7N NAD sing 392 n n C3N C4N NAD sing 393 n y C7N O7N NAD doub 394 n n C7N N7N NAD sing 395 n n N7N H71N NAD sing 396 n n N7N H72N NAD sing 397 n n C4N C5N NAD doub 398 n y C4N H4N NAD sing 399 n n C5N C6N NAD sing 400 n y C5N H5N NAD sing 401 n n C6N H6N NAD sing 402 n n # _atom_sites.entry_id 6MV1 _atom_sites.fract_transf_matrix[1][1] 0.017814 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002348 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 1 FAD FAD . C 3 NAD A 1 602 1 NAD NAD . D 4 HOH A 1 701 32 HOH HOH . D 4 HOH A 2 702 69 HOH HOH . D 4 HOH A 3 703 86 HOH HOH . D 4 HOH A 4 704 4 HOH HOH . D 4 HOH A 5 705 12 HOH HOH . D 4 HOH A 6 706 84 HOH HOH . D 4 HOH A 7 707 117 HOH HOH . D 4 HOH A 8 708 106 HOH HOH . D 4 HOH A 9 709 8 HOH HOH . D 4 HOH A 10 710 41 HOH HOH . D 4 HOH A 11 711 10 HOH HOH . D 4 HOH A 12 712 20 HOH HOH . D 4 HOH A 13 713 27 HOH HOH . D 4 HOH A 14 714 14 HOH HOH . D 4 HOH A 15 715 49 HOH HOH . D 4 HOH A 16 716 130 HOH HOH . D 4 HOH A 17 717 40 HOH HOH . D 4 HOH A 18 718 16 HOH HOH . D 4 HOH A 19 719 122 HOH HOH . D 4 HOH A 20 720 100 HOH HOH . D 4 HOH A 21 721 2 HOH HOH . D 4 HOH A 22 722 68 HOH HOH . D 4 HOH A 23 723 70 HOH HOH . D 4 HOH A 24 724 1 HOH HOH . D 4 HOH A 25 725 44 HOH HOH . D 4 HOH A 26 726 116 HOH HOH . D 4 HOH A 27 727 59 HOH HOH . D 4 HOH A 28 728 124 HOH HOH . D 4 HOH A 29 729 22 HOH HOH . D 4 HOH A 30 730 53 HOH HOH . D 4 HOH A 31 731 65 HOH HOH . D 4 HOH A 32 732 105 HOH HOH . D 4 HOH A 33 733 51 HOH HOH . D 4 HOH A 34 734 33 HOH HOH . D 4 HOH A 35 735 120 HOH HOH . D 4 HOH A 36 736 38 HOH HOH . D 4 HOH A 37 737 42 HOH HOH . D 4 HOH A 38 738 46 HOH HOH . D 4 HOH A 39 739 45 HOH HOH . D 4 HOH A 40 740 99 HOH HOH . D 4 HOH A 41 741 57 HOH HOH . D 4 HOH A 42 742 37 HOH HOH . D 4 HOH A 43 743 34 HOH HOH . D 4 HOH A 44 744 81 HOH HOH . D 4 HOH A 45 745 7 HOH HOH . D 4 HOH A 46 746 52 HOH HOH . D 4 HOH A 47 747 108 HOH HOH . D 4 HOH A 48 748 6 HOH HOH . D 4 HOH A 49 749 26 HOH HOH . D 4 HOH A 50 750 115 HOH HOH . D 4 HOH A 51 751 61 HOH HOH . D 4 HOH A 52 752 89 HOH HOH . D 4 HOH A 53 753 15 HOH HOH . D 4 HOH A 54 754 13 HOH HOH . D 4 HOH A 55 755 19 HOH HOH . D 4 HOH A 56 756 118 HOH HOH . D 4 HOH A 57 757 110 HOH HOH . D 4 HOH A 58 758 5 HOH HOH . D 4 HOH A 59 759 3 HOH HOH . D 4 HOH A 60 760 54 HOH HOH . D 4 HOH A 61 761 39 HOH HOH . D 4 HOH A 62 762 50 HOH HOH . D 4 HOH A 63 763 18 HOH HOH . D 4 HOH A 64 764 23 HOH HOH . D 4 HOH A 65 765 87 HOH HOH . D 4 HOH A 66 766 24 HOH HOH . D 4 HOH A 67 767 17 HOH HOH . D 4 HOH A 68 768 121 HOH HOH . D 4 HOH A 69 769 9 HOH HOH . D 4 HOH A 70 770 36 HOH HOH . D 4 HOH A 71 771 25 HOH HOH . D 4 HOH A 72 772 111 HOH HOH . D 4 HOH A 73 773 79 HOH HOH . D 4 HOH A 74 774 127 HOH HOH . D 4 HOH A 75 775 77 HOH HOH . D 4 HOH A 76 776 75 HOH HOH . D 4 HOH A 77 777 30 HOH HOH . D 4 HOH A 78 778 31 HOH HOH . D 4 HOH A 79 779 119 HOH HOH . D 4 HOH A 80 780 63 HOH HOH . D 4 HOH A 81 781 43 HOH HOH . D 4 HOH A 82 782 76 HOH HOH . D 4 HOH A 83 783 92 HOH HOH . D 4 HOH A 84 784 88 HOH HOH . D 4 HOH A 85 785 114 HOH HOH . D 4 HOH A 86 786 28 HOH HOH . D 4 HOH A 87 787 35 HOH HOH . D 4 HOH A 88 788 62 HOH HOH . D 4 HOH A 89 789 47 HOH HOH . D 4 HOH A 90 790 29 HOH HOH . D 4 HOH A 91 791 67 HOH HOH . D 4 HOH A 92 792 21 HOH HOH . D 4 HOH A 93 793 48 HOH HOH . D 4 HOH A 94 794 101 HOH HOH . D 4 HOH A 95 795 60 HOH HOH . D 4 HOH A 96 796 93 HOH HOH . D 4 HOH A 97 797 85 HOH HOH . D 4 HOH A 98 798 82 HOH HOH . D 4 HOH A 99 799 102 HOH HOH . D 4 HOH A 100 800 125 HOH HOH . D 4 HOH A 101 801 64 HOH HOH . D 4 HOH A 102 802 104 HOH HOH . D 4 HOH A 103 803 95 HOH HOH . D 4 HOH A 104 804 74 HOH HOH . D 4 HOH A 105 805 126 HOH HOH . D 4 HOH A 106 806 90 HOH HOH . D 4 HOH A 107 807 109 HOH HOH . D 4 HOH A 108 808 123 HOH HOH . D 4 HOH A 109 809 80 HOH HOH . D 4 HOH A 110 810 78 HOH HOH . D 4 HOH A 111 811 11 HOH HOH . D 4 HOH A 112 812 128 HOH HOH . D 4 HOH A 113 813 112 HOH HOH . D 4 HOH A 114 814 55 HOH HOH . D 4 HOH A 115 815 107 HOH HOH . D 4 HOH A 116 816 97 HOH HOH . D 4 HOH A 117 817 113 HOH HOH . D 4 HOH A 118 818 96 HOH HOH . D 4 HOH A 119 819 132 HOH HOH . D 4 HOH A 120 820 58 HOH HOH . D 4 HOH A 121 821 91 HOH HOH . D 4 HOH A 122 822 131 HOH HOH . D 4 HOH A 123 823 129 HOH HOH . D 4 HOH A 124 824 71 HOH HOH . D 4 HOH A 125 825 98 HOH HOH . D 4 HOH A 126 826 83 HOH HOH . D 4 HOH A 127 827 103 HOH HOH . D 4 HOH A 128 828 66 HOH HOH . D 4 HOH A 129 829 56 HOH HOH . D 4 HOH A 130 830 94 HOH HOH . D 4 HOH A 131 831 72 HOH HOH . D 4 HOH A 132 832 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 3 51.016 0.744 -6.776 1 37.63 ? PA NAD 602 A 1 HETATM 2 O O1A NAD . . . C 3 51.595 -0.656 -6.755 1 33.14 ? O1A NAD 602 A 1 HETATM 3 O O2A NAD . . . C 3 51.755 1.736 -7.62 1 35.16 -1 O2A NAD 602 A 1 HETATM 4 O O5B NAD . . . C 3 49.511 0.578 -7.269 1 40.56 ? O5B NAD 602 A 1 HETATM 5 C C5B NAD . . . C 3 48.721 -0.387 -6.597 1 33.81 ? C5B NAD 602 A 1 HETATM 6 C C4B NAD . . . C 3 47.264 -0.172 -6.982 1 40.29 ? C4B NAD 602 A 1 HETATM 7 O O4B NAD . . . C 3 46.826 1.142 -6.632 1 41.08 ? O4B NAD 602 A 1 HETATM 8 C C3B NAD . . . C 3 46.999 -0.238 -8.478 1 40.98 ? C3B NAD 602 A 1 HETATM 9 O O3B NAD . . . C 3 46.902 -1.582 -8.912 1 36.22 ? O3B NAD 602 A 1 HETATM 10 C C2B NAD . . . C 3 45.711 0.524 -8.644 1 47.48 ? C2B NAD 602 A 1 HETATM 11 O O2B NAD . . . C 3 44.584 -0.357 -8.561 1 45.9 ? O2B NAD 602 A 1 HETATM 12 C C1B NAD . . . C 3 45.757 1.518 -7.498 1 50.04 ? C1B NAD 602 A 1 HETATM 13 N N9A NAD . . . C 3 45.998 2.828 -8.125 1 56.28 ? N9A NAD 602 A 1 HETATM 14 C C8A NAD . . . C 3 47.184 3.341 -8.495 1 55.79 ? C8A NAD 602 A 1 HETATM 15 N N7A NAD . . . C 3 46.996 4.562 -9.058 1 68.22 ? N7A NAD 602 A 1 HETATM 16 C C5A NAD . . . C 3 45.674 4.825 -9.057 1 63.66 ? C5A NAD 602 A 1 HETATM 17 C C6A NAD . . . C 3 44.787 5.92 -9.506 1 61.87 ? C6A NAD 602 A 1 HETATM 18 N N6A NAD . . . C 3 45.291 7.032 -10.085 1 58.44 ? N6A NAD 602 A 1 HETATM 19 N N1A NAD . . . C 3 43.454 5.774 -9.302 1 65.8 ? N1A NAD 602 A 1 HETATM 20 C C2A NAD . . . C 3 42.914 4.677 -8.728 1 55.49 ? C2A NAD 602 A 1 HETATM 21 N N3A NAD . . . C 3 43.664 3.645 -8.307 1 59.52 ? N3A NAD 602 A 1 HETATM 22 C C4A NAD . . . C 3 45.018 3.669 -8.439 1 61.69 ? C4A NAD 602 A 1 HETATM 23 O O3 NAD . . . C 3 50.804 1.405 -5.333 1 41.09 ? O3 NAD 602 A 1 HETATM 24 P PN NAD . . . C 3 51.979 1.666 -4.299 1 34.25 ? PN NAD 602 A 1 HETATM 25 O O1N NAD . . . C 3 53.3 1.95 -4.991 1 33.46 ? O1N NAD 602 A 1 HETATM 26 O O2N NAD . . . C 3 52.032 0.419 -3.444 1 32.61 -1 O2N NAD 602 A 1 HETATM 27 O O5D NAD . . . C 3 51.547 2.902 -3.371 1 37.6 ? O5D NAD 602 A 1 HETATM 28 C C5D NAD . . . C 3 50.725 2.664 -2.221 1 35 ? C5D NAD 602 A 1 HETATM 29 C C4D NAD . . . C 3 50.424 3.992 -1.519 1 32.44 ? C4D NAD 602 A 1 HETATM 30 O O4D NAD . . . C 3 49.854 3.8 -0.226 1 34.02 ? O4D NAD 602 A 1 HETATM 31 C C3D NAD . . . C 3 51.648 4.86 -1.308 1 34.15 ? C3D NAD 602 A 1 HETATM 32 O O3D NAD . . . C 3 51.413 6.095 -1.993 1 43.57 ? O3D NAD 602 A 1 HETATM 33 C C2D NAD . . . C 3 51.758 5.056 0.194 1 38.85 ? C2D NAD 602 A 1 HETATM 34 O O2D NAD . . . C 3 52.225 6.368 0.528 1 35.22 ? O2D NAD 602 A 1 HETATM 35 C C1D NAD . . . C 3 50.336 4.806 0.672 1 37.63 ? C1D NAD 602 A 1 HETATM 36 N N1N NAD . . . C 3 50.228 4.323 2.05 1 36.57 1 N1N NAD 602 A 1 HETATM 37 C C2N NAD . . . C 3 49.658 5.081 2.993 1 37.53 ? C2N NAD 602 A 1 HETATM 38 C C3N NAD . . . C 3 49.535 4.637 4.303 1 39.49 ? C3N NAD 602 A 1 HETATM 39 C C7N NAD . . . C 3 48.883 5.542 5.305 1 40.89 ? C7N NAD 602 A 1 HETATM 40 O O7N NAD . . . C 3 48.5 6.618 4.886 1 43.15 ? O7N NAD 602 A 1 HETATM 41 N N7N NAD . . . C 3 48.716 5.199 6.582 1 45.88 ? N7N NAD 602 A 1 HETATM 42 C C4N NAD . . . C 3 49.99 3.382 4.649 1 35.36 ? C4N NAD 602 A 1 HETATM 43 C C5N NAD . . . C 3 50.57 2.569 3.693 1 31.93 ? C5N NAD 602 A 1 HETATM 44 C C6N NAD . . . C 3 50.729 2.982 2.319 1 37.27 ? C6N NAD 602 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #