data_6MV7 # _model_server_result.job_id UF3tVj5DRhKAs2zsPs2w0g _model_server_result.datetime_utc '2024-12-12 13:39:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mv7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6MV7 # _exptl.entry_id 6MV7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MV7 _cell.length_a 27.65 _cell.length_b 38.83 _cell.length_c 97.92 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MV7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 23 1_555 A SG CYS 82 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 38 A CYS 37 1_555 A SG CYS 92 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 56 A CYS 55 1_555 A SG CYS 107 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 63 A CYS 62 1_555 A SG CYS 70 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 6MV7 _atom_sites.fract_transf_matrix[1][1] 0.036166 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 201 1 AMP AMP . C 3 HOH A 1 301 8 HOH HOH . C 3 HOH A 2 302 26 HOH HOH . C 3 HOH A 3 303 1 HOH HOH . C 3 HOH A 4 304 12 HOH HOH . C 3 HOH A 5 305 27 HOH HOH . C 3 HOH A 6 306 13 HOH HOH . C 3 HOH A 7 307 23 HOH HOH . C 3 HOH A 8 308 25 HOH HOH . C 3 HOH A 9 309 2 HOH HOH . C 3 HOH A 10 310 21 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 24 HOH HOH . C 3 HOH A 13 313 29 HOH HOH . C 3 HOH A 14 314 7 HOH HOH . C 3 HOH A 15 315 14 HOH HOH . C 3 HOH A 16 316 4 HOH HOH . C 3 HOH A 17 317 3 HOH HOH . C 3 HOH A 18 318 15 HOH HOH . C 3 HOH A 19 319 18 HOH HOH . C 3 HOH A 20 320 28 HOH HOH . C 3 HOH A 21 321 22 HOH HOH . C 3 HOH A 22 322 17 HOH HOH . C 3 HOH A 23 323 10 HOH HOH . C 3 HOH A 24 324 6 HOH HOH . C 3 HOH A 25 325 9 HOH HOH . C 3 HOH A 26 326 19 HOH HOH . C 3 HOH A 27 327 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 -0.794 -3.876 19.722 1 48.56 ? P AMP 201 A 1 HETATM 2 O O1P AMP . . . B 2 -0.839 -4.728 18.475 1 34.41 ? O1P AMP 201 A 1 HETATM 3 O O2P AMP . . . B 2 0.438 -4.053 20.578 1 43.36 ? O2P AMP 201 A 1 HETATM 4 O O3P AMP . . . B 2 -1.19 -2.437 19.492 1 39.47 ? O3P AMP 201 A 1 HETATM 5 O O5' AMP . . . B 2 -1.952 -4.446 20.654 1 36.75 ? O5' AMP 201 A 1 HETATM 6 C C5' AMP . . . B 2 -2.492 -3.659 21.713 1 30.04 ? C5' AMP 201 A 1 HETATM 7 C C4' AMP . . . B 2 -3.802 -4.223 22.204 1 35.05 ? C4' AMP 201 A 1 HETATM 8 O O4' AMP . . . B 2 -3.749 -5.669 22.127 1 33.85 ? O4' AMP 201 A 1 HETATM 9 C C3' AMP . . . B 2 -4.171 -3.872 23.644 1 38.25 ? C3' AMP 201 A 1 HETATM 10 O O3' AMP . . . B 2 -5.577 -3.65 23.738 1 35.58 ? O3' AMP 201 A 1 HETATM 11 C C2' AMP . . . B 2 -3.793 -5.13 24.425 1 39.85 ? C2' AMP 201 A 1 HETATM 12 O O2' AMP . . . B 2 -4.566 -5.35 25.587 1 26.3 ? O2' AMP 201 A 1 HETATM 13 C C1' AMP . . . B 2 -4.007 -6.238 23.394 1 27.42 ? C1' AMP 201 A 1 HETATM 14 N N9 AMP . . . B 2 -3.096 -7.373 23.557 1 30.42 ? N9 AMP 201 A 1 HETATM 15 C C8 AMP . . . B 2 -1.753 -7.327 23.456 1 30.46 ? C8 AMP 201 A 1 HETATM 16 N N7 AMP . . . B 2 -1.202 -8.552 23.662 1 25.61 ? N7 AMP 201 A 1 HETATM 17 C C5 AMP . . . B 2 -2.211 -9.408 23.903 1 23.65 ? C5 AMP 201 A 1 HETATM 18 C C6 AMP . . . B 2 -2.339 -10.854 24.202 1 19.56 ? C6 AMP 201 A 1 HETATM 19 N N6 AMP . . . B 2 -1.251 -11.657 24.286 1 26.11 ? N6 AMP 201 A 1 HETATM 20 N N1 AMP . . . B 2 -3.582 -11.345 24.386 1 27.49 ? N1 AMP 201 A 1 HETATM 21 C C2 AMP . . . B 2 -4.672 -10.559 24.306 1 36.53 ? C2 AMP 201 A 1 HETATM 22 N N3 AMP . . . B 2 -4.636 -9.245 24.039 1 25.44 ? N3 AMP 201 A 1 HETATM 23 C C4 AMP . . . B 2 -3.454 -8.624 23.835 1 28.02 ? C4 AMP 201 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #