data_6MVD
#
_model_server_result.job_id            lqYjgnJ1mud866f2ADwAXw 
_model_server_result.datetime_utc      '2024-11-14 16:24:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mvd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":502}' 
#
_entry.id    6MVD 
#
_exptl.entry_id    6MVD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          125.45 
_cell.angle_gamma         90 
_cell.entry_id            6MVD 
_cell.length_a            134.697 
_cell.length_b            106.377 
_cell.length_c            117.823 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MVD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,S 1 1 
B,M,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 M N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 30 A CYS 50 1_555 A SG CYS 54 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf2 A SG CYS 293 A CYS 313 1_555 A SG CYS 336 A CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
disulf ? disulf3 B SG CYS 30 B CYS 50 1_555 B SG CYS 54 B CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf4 B SG CYS 293 B CYS 313 1_555 B SG CYS 336 B CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
covale ? covale1 A ND2 ASN 64 A ASN 84 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale2 A OG SER 161 A SER 181 1_555 F P1 H9A . A H9A 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? 
covale ? covale3 A ND2 ASN 252 A ASN 272 1_555 D C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? 
covale ? covale4 A ND2 ASN 364 A ASN 384 1_555 E C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale5 B ND2 ASN 64 B ASN 84 1_555 M C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale6 B OG SER 161 B SER 181 1_555 O P1 H9A . B H9A 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? 
covale ? covale7 B ND2 ASN 252 B ASN 272 1_555 N C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? 
metalc ? metalc1 A N HIS 1 A HIS 21 1_555 L NI NI . A NI 510 2_857 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc2 A ND1 HIS 1 A HIS 21 1_555 L NI NI . A NI 510 2_857 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc3 A NE2 HIS 348 A HIS 368 1_555 L NI NI . A NI 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc4 A ND1 HIS 378 A HIS 398 1_555 L NI NI . A NI 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc5 L NI NI . A NI 510 1_555 S O HOH . A HOH 613 2_857 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 310 n n 
C1 O1 NAG sing 311 n n 
C1 O5 NAG sing 312 n n 
C1 H1 NAG sing 313 n n 
C2 C3 NAG sing 314 n n 
C2 N2 NAG sing 315 n n 
C2 H2 NAG sing 316 n n 
C3 C4 NAG sing 317 n n 
C3 O3 NAG sing 318 n n 
C3 H3 NAG sing 319 n n 
C4 C5 NAG sing 320 n n 
C4 O4 NAG sing 321 n n 
C4 H4 NAG sing 322 n n 
C5 C6 NAG sing 323 n n 
C5 O5 NAG sing 324 n n 
C5 H5 NAG sing 325 n n 
C6 O6 NAG sing 326 n n 
C6 H61 NAG sing 327 n n 
C6 H62 NAG sing 328 n n 
C7 C8 NAG sing 329 n n 
C7 N2 NAG sing 330 n n 
C7 O7 NAG doub 331 n n 
C8 H81 NAG sing 332 n n 
C8 H82 NAG sing 333 n n 
C8 H83 NAG sing 334 n n 
N2 HN2 NAG sing 335 n n 
O1 HO1 NAG sing 336 n n 
O3 HO3 NAG sing 337 n n 
O4 HO4 NAG sing 338 n n 
O6 HO6 NAG sing 339 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6MVD 
_atom_sites.fract_transf_matrix[1][1]    0.007424 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005286 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009401 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010419 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 501 400 NAG NAG . 
D 2 NAG A 1 502 401 NAG NAG . 
E 2 NAG A 1 503 402 NAG NAG . 
F 3 H9A A 1 504 405 H9A IEF . 
G 4 H94 A 1 505 406 H94 X14 . 
H 5 SO4 A 1 506 500 SO4 SO4 . 
I 5 SO4 A 1 507 501 SO4 SO4 . 
J 5 SO4 A 1 508 502 SO4 SO4 . 
K 5 SO4 A 1 509 503 SO4 SO4 . 
L 6 NI A 1 510 505 NI NI . 
M 2 NAG B 1 501 400 NAG NAG . 
N 2 NAG B 1 502 401 NAG NAG . 
O 3 H9A B 1 503 405 H9A IEF . 
P 4 H94 B 1 504 406 H94 X14 . 
Q 5 SO4 B 1 505 500 SO4 SO4 . 
R 5 SO4 B 1 506 501 SO4 SO4 . 
S 7 HOH A 1 601 12 HOH HOH . 
S 7 HOH A 2 602 15 HOH HOH . 
S 7 HOH A 3 603 18 HOH HOH . 
S 7 HOH A 4 604 10 HOH HOH . 
S 7 HOH A 5 605 8 HOH HOH . 
S 7 HOH A 6 606 14 HOH HOH . 
S 7 HOH A 7 607 7 HOH HOH . 
S 7 HOH A 8 608 6 HOH HOH . 
S 7 HOH A 9 609 1 HOH HOH . 
S 7 HOH A 10 610 5 HOH HOH . 
S 7 HOH A 11 611 3 HOH HOH . 
S 7 HOH A 12 612 13 HOH HOH . 
S 7 HOH A 13 613 17 HOH HOH . 
S 7 HOH A 14 614 20 HOH HOH . 
S 7 HOH A 15 615 4 HOH HOH . 
S 7 HOH A 16 616 19 HOH HOH . 
T 7 HOH B 1 601 9 HOH HOH . 
T 7 HOH B 2 602 11 HOH HOH . 
T 7 HOH B 3 603 2 HOH HOH . 
T 7 HOH B 4 604 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . N 2 84.575 17.643 149.911 1 100.29 ? C1 NAG 502 B 1 
HETATM 2 C C2 NAG . . . N 2 84.677 17.732 151.439 1 102.72 ? C2 NAG 502 B 1 
HETATM 3 C C3 NAG . . . N 2 84.219 16.449 152.135 1 101.75 ? C3 NAG 502 B 1 
HETATM 4 C C4 NAG . . . N 2 82.992 15.799 151.487 1 101.87 ? C4 NAG 502 B 1 
HETATM 5 C C5 NAG . . . N 2 83.122 15.776 149.946 1 100.23 ? C5 NAG 502 B 1 
HETATM 6 C C6 NAG . . . N 2 81.96 15.23 149.114 1 98.07 ? C6 NAG 502 B 1 
HETATM 7 C C7 NAG . . . N 2 87.221 17.727 151.64 1 100.87 ? C7 NAG 502 B 1 
HETATM 8 C C8 NAG . . . N 2 87.472 16.462 150.852 1 96.64 ? C8 NAG 502 B 1 
HETATM 9 N N2 NAG . . . N 2 85.991 18.214 151.896 1 102.53 ? N2 NAG 502 B 1 
HETATM 10 O O3 NAG . . . N 2 83.881 16.827 153.464 1 100.05 ? O3 NAG 502 B 1 
HETATM 11 O O4 NAG . . . N 2 82.864 14.491 152.068 1 101.86 ? O4 NAG 502 B 1 
HETATM 12 O O5 NAG . . . N 2 83.301 17.114 149.518 1 98.34 ? O5 NAG 502 B 1 
HETATM 13 O O6 NAG . . . N 2 80.709 15.616 149.678 1 100.33 ? O6 NAG 502 B 1 
HETATM 14 O O7 NAG . . . N 2 88.169 18.36 152.062 1 101.3 ? O7 NAG 502 B 1 
#
_model_server_stats.io_time_ms              137 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#