data_6MVD # _model_server_result.job_id luxdYtWy88GvwgO-jzfiZQ _model_server_result.datetime_utc '2024-11-14 16:28:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mvd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 6MVD # _exptl.entry_id 6MVD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.129 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'propan-2-yl hydrogen (R)-ethylphosphonate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.45 _cell.angle_gamma 90 _cell.entry_id 6MVD _cell.length_a 134.697 _cell.length_b 106.377 _cell.length_c 117.823 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MVD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,S 1 1 B,M,N,O,P,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 50 1_555 A SG CYS 54 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 293 A CYS 313 1_555 A SG CYS 336 A CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf3 B SG CYS 30 B CYS 50 1_555 B SG CYS 54 B CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf4 B SG CYS 293 B CYS 313 1_555 B SG CYS 336 B CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? covale ? covale1 A ND2 ASN 64 A ASN 84 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A OG SER 161 A SER 181 1_555 F P1 H9A . A H9A 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale3 A ND2 ASN 252 A ASN 272 1_555 D C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale4 A ND2 ASN 364 A ASN 384 1_555 E C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale5 B ND2 ASN 64 B ASN 84 1_555 M C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 B OG SER 161 B SER 181 1_555 O P1 H9A . B H9A 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? covale ? covale7 B ND2 ASN 252 B ASN 272 1_555 N C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? metalc ? metalc1 A N HIS 1 A HIS 21 1_555 L NI NI . A NI 510 2_857 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc2 A ND1 HIS 1 A HIS 21 1_555 L NI NI . A NI 510 2_857 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc3 A NE2 HIS 348 A HIS 368 1_555 L NI NI . A NI 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc4 A ND1 HIS 378 A HIS 398 1_555 L NI NI . A NI 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc5 L NI NI . A NI 510 1_555 S O HOH . A HOH 613 2_857 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? # _chem_comp.formula 'C5 H13 O3 P' _chem_comp.formula_weight 152.129 _chem_comp.id H9A _chem_comp.mon_nstd_flag . _chem_comp.name 'propan-2-yl hydrogen (R)-ethylphosphonate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 H9A sing 181 n n C1 P1 H9A sing 182 n n O1 P1 H9A doub 183 n n P1 O2 H9A sing 184 n n O2 CM H9A sing 185 n n CM2 CM H9A sing 186 n n CM CM1 H9A sing 187 n n P1 O3 H9A sing 188 n n CM H1 H9A sing 189 n n CM2 H2 H9A sing 190 n n CM2 H3 H9A sing 191 n n CM2 H4 H9A sing 192 n n CM1 H5 H9A sing 193 n n CM1 H6 H9A sing 194 n n CM1 H7 H9A sing 195 n n C1 H8 H9A sing 196 n n C1 H9 H9A sing 197 n n C2 H10 H9A sing 198 n n C2 H11 H9A sing 199 n n C2 H12 H9A sing 200 n n O3 H13 H9A sing 201 n n # _atom_sites.entry_id 6MVD _atom_sites.fract_transf_matrix[1][1] 0.007424 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005286 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 501 400 NAG NAG . D 2 NAG A 1 502 401 NAG NAG . E 2 NAG A 1 503 402 NAG NAG . F 3 H9A A 1 504 405 H9A IEF . G 4 H94 A 1 505 406 H94 X14 . H 5 SO4 A 1 506 500 SO4 SO4 . I 5 SO4 A 1 507 501 SO4 SO4 . J 5 SO4 A 1 508 502 SO4 SO4 . K 5 SO4 A 1 509 503 SO4 SO4 . L 6 NI A 1 510 505 NI NI . M 2 NAG B 1 501 400 NAG NAG . N 2 NAG B 1 502 401 NAG NAG . O 3 H9A B 1 503 405 H9A IEF . P 4 H94 B 1 504 406 H94 X14 . Q 5 SO4 B 1 505 500 SO4 SO4 . R 5 SO4 B 1 506 501 SO4 SO4 . S 7 HOH A 1 601 12 HOH HOH . S 7 HOH A 2 602 15 HOH HOH . S 7 HOH A 3 603 18 HOH HOH . S 7 HOH A 4 604 10 HOH HOH . S 7 HOH A 5 605 8 HOH HOH . S 7 HOH A 6 606 14 HOH HOH . S 7 HOH A 7 607 7 HOH HOH . S 7 HOH A 8 608 6 HOH HOH . S 7 HOH A 9 609 1 HOH HOH . S 7 HOH A 10 610 5 HOH HOH . S 7 HOH A 11 611 3 HOH HOH . S 7 HOH A 12 612 13 HOH HOH . S 7 HOH A 13 613 17 HOH HOH . S 7 HOH A 14 614 20 HOH HOH . S 7 HOH A 15 615 4 HOH HOH . S 7 HOH A 16 616 19 HOH HOH . T 7 HOH B 1 601 9 HOH HOH . T 7 HOH B 2 602 11 HOH HOH . T 7 HOH B 3 603 2 HOH HOH . T 7 HOH B 4 604 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 H9A . . . F 3 113.263 1.508 115.88 1 33.99 ? P1 H9A 504 A 1 HETATM 2 O O1 H9A . . . F 3 112.703 0.472 114.941 1 34.37 ? O1 H9A 504 A 1 HETATM 3 O O2 H9A . . . F 3 113.345 0.79 117.351 1 38.09 ? O2 H9A 504 A 1 HETATM 4 C CM H9A . . . F 3 113.543 1.552 118.507 1 42.77 ? CM H9A 504 A 1 HETATM 5 C CM2 H9A . . . F 3 115.037 1.638 118.84 1 42.81 ? CM2 H9A 504 A 1 HETATM 6 C CM1 H9A . . . F 3 112.827 0.842 119.689 1 44.94 ? CM1 H9A 504 A 1 HETATM 7 C C1 H9A . . . F 3 112.191 3.047 115.63 1 29.48 ? C1 H9A 504 A 1 HETATM 8 C C2 H9A . . . F 3 111.383 3.06 114.282 1 27.49 ? C2 H9A 504 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #