data_6MVD # _model_server_result.job_id TBGyo7qy_P1P82FPAMB6ew _model_server_result.datetime_utc '2025-01-08 09:05:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mvd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":504}' # _entry.id 6MVD # _exptl.entry_id 6MVD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.36 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{4-[(4R)-4-hydroxy-6-oxo-4-(trifluoromethyl)-4,5,6,7-tetrahydro-2H-pyrazolo[3,4-b]pyridin-3-yl]piperidin-1-yl}-4-(trifluoromethyl)pyridine-3-carbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.45 _cell.angle_gamma 90 _cell.entry_id 6MVD _cell.length_a 134.697 _cell.length_b 106.377 _cell.length_c 117.823 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MVD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,S 1 1 B,M,N,O,P,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 50 1_555 A SG CYS 54 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 293 A CYS 313 1_555 A SG CYS 336 A CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf3 B SG CYS 30 B CYS 50 1_555 B SG CYS 54 B CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf4 B SG CYS 293 B CYS 313 1_555 B SG CYS 336 B CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? covale ? covale1 A ND2 ASN 64 A ASN 84 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A OG SER 161 A SER 181 1_555 F P1 H9A . A H9A 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale3 A ND2 ASN 252 A ASN 272 1_555 D C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale4 A ND2 ASN 364 A ASN 384 1_555 E C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale5 B ND2 ASN 64 B ASN 84 1_555 M C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 B OG SER 161 B SER 181 1_555 O P1 H9A . B H9A 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? covale ? covale7 B ND2 ASN 252 B ASN 272 1_555 N C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? metalc ? metalc1 A N HIS 1 A HIS 21 1_555 L NI NI . A NI 510 2_857 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc2 A ND1 HIS 1 A HIS 21 1_555 L NI NI . A NI 510 2_857 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc3 A NE2 HIS 348 A HIS 368 1_555 L NI NI . A NI 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc4 A ND1 HIS 378 A HIS 398 1_555 L NI NI . A NI 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc5 L NI NI . A NI 510 1_555 S O HOH . A HOH 613 2_857 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? # _chem_comp.formula 'C19 H16 F6 N6 O2' _chem_comp.formula_weight 474.36 _chem_comp.id H94 _chem_comp.mon_nstd_flag . _chem_comp.name 6-{4-[(4R)-4-hydroxy-6-oxo-4-(trifluoromethyl)-4,5,6,7-tetrahydro-2H-pyrazolo[3,4-b]pyridin-3-yl]piperidin-1-yl}-4-(trifluoromethyl)pyridine-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 H94 sing 129 n n O5 C4 H94 doub 130 n n C3 C4 H94 sing 131 n n C3 C2 H94 sing 132 n n C4 N6 H94 sing 133 n n C2 C11 H94 sing 134 n n C2 C31 H94 sing 135 n n C17 C16 H94 sing 136 n n C17 C12 H94 sing 137 n n C16 N15 H94 sing 138 n n N6 C7 H94 sing 139 n n C11 C7 H94 sing 140 n y C11 C10 H94 doub 141 n y C7 N8 H94 doub 142 n y F34 C31 H94 sing 143 n n N23 C22 H94 doub 144 n y N23 C18 H94 sing 145 n y C10 C12 H94 sing 146 n n C10 N9 H94 sing 147 n y C22 C21 H94 sing 148 n y C12 C13 H94 sing 149 n n N8 N9 H94 sing 150 n y C31 F33 H94 sing 151 n n C31 F32 H94 sing 152 n n N15 C18 H94 sing 153 n n N15 C14 H94 sing 154 n n C18 C19 H94 doub 155 n y C21 C24 H94 sing 156 n n C21 C20 H94 doub 157 n y C24 N25 H94 trip 158 n n C13 C14 H94 sing 159 n n C19 C20 H94 sing 160 n y C20 C26 H94 sing 161 n n C26 F29 H94 sing 162 n n C26 F28 H94 sing 163 n n C26 F27 H94 sing 164 n n C12 H1 H94 sing 165 n n C13 H2 H94 sing 166 n n C13 H3 H94 sing 167 n n C14 H4 H94 sing 168 n n C14 H5 H94 sing 169 n n C16 H6 H94 sing 170 n n C16 H7 H94 sing 171 n n C17 H8 H94 sing 172 n n C17 H9 H94 sing 173 n n C19 H10 H94 sing 174 n n C22 H11 H94 sing 175 n n O1 H12 H94 sing 176 n n N6 H13 H94 sing 177 n n C3 H14 H94 sing 178 n n C3 H15 H94 sing 179 n n N9 H16 H94 sing 180 n n # _atom_sites.entry_id 6MVD _atom_sites.fract_transf_matrix[1][1] 0.007424 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005286 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 501 400 NAG NAG . D 2 NAG A 1 502 401 NAG NAG . E 2 NAG A 1 503 402 NAG NAG . F 3 H9A A 1 504 405 H9A IEF . G 4 H94 A 1 505 406 H94 X14 . H 5 SO4 A 1 506 500 SO4 SO4 . I 5 SO4 A 1 507 501 SO4 SO4 . J 5 SO4 A 1 508 502 SO4 SO4 . K 5 SO4 A 1 509 503 SO4 SO4 . L 6 NI A 1 510 505 NI NI . M 2 NAG B 1 501 400 NAG NAG . N 2 NAG B 1 502 401 NAG NAG . O 3 H9A B 1 503 405 H9A IEF . P 4 H94 B 1 504 406 H94 X14 . Q 5 SO4 B 1 505 500 SO4 SO4 . R 5 SO4 B 1 506 501 SO4 SO4 . S 7 HOH A 1 601 12 HOH HOH . S 7 HOH A 2 602 15 HOH HOH . S 7 HOH A 3 603 18 HOH HOH . S 7 HOH A 4 604 10 HOH HOH . S 7 HOH A 5 605 8 HOH HOH . S 7 HOH A 6 606 14 HOH HOH . S 7 HOH A 7 607 7 HOH HOH . S 7 HOH A 8 608 6 HOH HOH . S 7 HOH A 9 609 1 HOH HOH . S 7 HOH A 10 610 5 HOH HOH . S 7 HOH A 11 611 3 HOH HOH . S 7 HOH A 12 612 13 HOH HOH . S 7 HOH A 13 613 17 HOH HOH . S 7 HOH A 14 614 20 HOH HOH . S 7 HOH A 15 615 4 HOH HOH . S 7 HOH A 16 616 19 HOH HOH . T 7 HOH B 1 601 9 HOH HOH . T 7 HOH B 2 602 11 HOH HOH . T 7 HOH B 3 603 2 HOH HOH . T 7 HOH B 4 604 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 H94 . . . P 4 99.99 15.668 110.529 1 74.17 ? C10 H94 504 B 1 HETATM 2 C C11 H94 . . . P 4 98.677 16.375 110.624 1 74.58 ? C11 H94 504 B 1 HETATM 3 C C12 H94 . . . P 4 100.311 14.242 110.747 1 72.99 ? C12 H94 504 B 1 HETATM 4 C C13 H94 . . . P 4 101.186 14.132 111.993 1 72.13 ? C13 H94 504 B 1 HETATM 5 C C14 H94 . . . P 4 102.341 13.146 111.864 1 72.69 ? C14 H94 504 B 1 HETATM 6 C C16 H94 . . . P 4 101.367 12.167 109.845 1 74.06 ? C16 H94 504 B 1 HETATM 7 C C17 H94 . . . P 4 101.027 13.63 109.562 1 73.23 ? C17 H94 504 B 1 HETATM 8 C C18 H94 . . . P 4 103.119 11.066 111.05 1 74.91 ? C18 H94 504 B 1 HETATM 9 C C19 H94 . . . P 4 103.972 10.764 112.118 1 75.7 ? C19 H94 504 B 1 HETATM 10 C C20 H94 . . . P 4 105.095 9.932 111.962 1 78.82 ? C20 H94 504 B 1 HETATM 11 C C21 H94 . . . P 4 105.294 9.414 110.68 1 76.59 ? C21 H94 504 B 1 HETATM 12 C C22 H94 . . . P 4 104.428 9.745 109.65 1 77.31 ? C22 H94 504 B 1 HETATM 13 C C24 H94 . . . P 4 106.28 8.661 110.34 1 78.3 ? C24 H94 504 B 1 HETATM 14 F F34 H94 . . . P 4 95.925 15.258 112.73 1 71.23 ? F34 H94 504 B 1 HETATM 15 C C31 H94 . . . P 4 97.146 15.715 112.466 1 72.83 ? C31 H94 504 B 1 HETATM 16 F F32 H94 . . . P 4 97.283 16.872 113.106 1 71.48 ? F32 H94 504 B 1 HETATM 17 F F33 H94 . . . P 4 98.074 14.851 112.867 1 71.11 ? F33 H94 504 B 1 HETATM 18 C C2 H94 . . . P 4 97.299 15.885 110.949 1 74.21 ? C2 H94 504 B 1 HETATM 19 O O1 H94 . . . P 4 97.082 14.61 110.332 1 76.54 ? O1 H94 504 B 1 HETATM 20 C C7 H94 . . . P 4 98.997 17.683 110.351 1 74.79 ? C7 H94 504 B 1 HETATM 21 N N6 H94 . . . P 4 98.064 18.638 110.281 1 73.8 ? N6 H94 504 B 1 HETATM 22 C C4 H94 . . . P 4 96.767 18.314 110.369 1 72.97 ? C4 H94 504 B 1 HETATM 23 O O5 H94 . . . P 4 95.922 19.169 110.443 1 73.04 ? O5 H94 504 B 1 HETATM 24 C C3 H94 . . . P 4 96.277 16.883 110.408 1 72.93 ? C3 H94 504 B 1 HETATM 25 N N9 H94 . . . P 4 100.869 16.623 110.219 1 76.77 ? N9 H94 504 B 1 HETATM 26 N N8 H94 . . . P 4 100.282 17.903 110.092 1 78.3 ? N8 H94 504 B 1 HETATM 27 N N15 H94 . . . P 4 101.985 11.909 111.171 1 73.67 ? N15 H94 504 B 1 HETATM 28 N N23 H94 . . . P 4 103.389 10.537 109.843 1 76.19 ? N23 H94 504 B 1 HETATM 29 N N25 H94 . . . P 4 107.183 8.036 109.952 1 78.33 ? N25 H94 504 B 1 HETATM 30 C C26 H94 . . . P 4 106.026 9.616 113.158 1 83.43 ? C26 H94 504 B 1 HETATM 31 F F27 H94 . . . P 4 105.494 9.838 114.355 1 86.31 ? F27 H94 504 B 1 HETATM 32 F F28 H94 . . . P 4 106.356 8.335 113.166 1 85.36 ? F28 H94 504 B 1 HETATM 33 F F29 H94 . . . P 4 107.131 10.358 113.141 1 85.2 ? F29 H94 504 B 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 935 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 33 #