data_6MVE # _model_server_result.job_id vtATYL2Lo05G6KHMbsc2zA _model_server_result.datetime_utc '2024-11-27 15:38:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mve # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 6MVE # _exptl.entry_id 6MVE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MVE _cell.length_a 126.413 _cell.length_b 126.413 _cell.length_c 125.488 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MVE _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 62.744 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O1A TTP . A TTP 801 1_555 E MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc2 B O1B TTP . A TTP 801 1_555 E MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc3 B O1G TTP . A TTP 801 1_555 E MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc4 E MG MG . A MG 804 1_555 F O HOH . A HOH 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc5 E MG MG . A MG 804 1_555 F O HOH . A HOH 980 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc6 E MG MG . A MG 804 1_555 F O HOH . A HOH 1018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6MVE _atom_sites.fract_transf_matrix[1][1] 0.007911 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TTP A 1 801 801 TTP TTP . C 3 ADP A 1 802 901 ADP ADP . D 4 ATP A 1 803 1001 ATP ATP . E 5 MG A 1 804 1 MG MG . F 6 HOH A 1 901 130 HOH HOH . F 6 HOH A 2 902 80 HOH HOH . F 6 HOH A 3 903 143 HOH HOH . F 6 HOH A 4 904 9 HOH HOH . F 6 HOH A 5 905 111 HOH HOH . F 6 HOH A 6 906 47 HOH HOH . F 6 HOH A 7 907 44 HOH HOH . F 6 HOH A 8 908 14 HOH HOH . F 6 HOH A 9 909 19 HOH HOH . F 6 HOH A 10 910 107 HOH HOH . F 6 HOH A 11 911 69 HOH HOH . F 6 HOH A 12 912 42 HOH HOH . F 6 HOH A 13 913 25 HOH HOH . F 6 HOH A 14 914 123 HOH HOH . F 6 HOH A 15 915 89 HOH HOH . F 6 HOH A 16 916 217 HOH HOH . F 6 HOH A 17 917 3 HOH HOH . F 6 HOH A 18 918 74 HOH HOH . F 6 HOH A 19 919 49 HOH HOH . F 6 HOH A 20 920 55 HOH HOH . F 6 HOH A 21 921 118 HOH HOH . F 6 HOH A 22 922 91 HOH HOH . F 6 HOH A 23 923 15 HOH HOH . F 6 HOH A 24 924 29 HOH HOH . F 6 HOH A 25 925 22 HOH HOH . F 6 HOH A 26 926 102 HOH HOH . F 6 HOH A 27 927 86 HOH HOH . F 6 HOH A 28 928 112 HOH HOH . F 6 HOH A 29 929 70 HOH HOH . F 6 HOH A 30 930 18 HOH HOH . F 6 HOH A 31 931 97 HOH HOH . F 6 HOH A 32 932 57 HOH HOH . F 6 HOH A 33 933 126 HOH HOH . F 6 HOH A 34 934 103 HOH HOH . F 6 HOH A 35 935 10 HOH HOH . F 6 HOH A 36 936 43 HOH HOH . F 6 HOH A 37 937 138 HOH HOH . F 6 HOH A 38 938 76 HOH HOH . F 6 HOH A 39 939 11 HOH HOH . F 6 HOH A 40 940 65 HOH HOH . F 6 HOH A 41 941 99 HOH HOH . F 6 HOH A 42 942 145 HOH HOH . F 6 HOH A 43 943 5 HOH HOH . F 6 HOH A 44 944 37 HOH HOH . F 6 HOH A 45 945 51 HOH HOH . F 6 HOH A 46 946 30 HOH HOH . F 6 HOH A 47 947 32 HOH HOH . F 6 HOH A 48 948 104 HOH HOH . F 6 HOH A 49 949 50 HOH HOH . F 6 HOH A 50 950 24 HOH HOH . F 6 HOH A 51 951 53 HOH HOH . F 6 HOH A 52 952 16 HOH HOH . F 6 HOH A 53 953 93 HOH HOH . F 6 HOH A 54 954 95 HOH HOH . F 6 HOH A 55 955 72 HOH HOH . F 6 HOH A 56 956 140 HOH HOH . F 6 HOH A 57 957 121 HOH HOH . F 6 HOH A 58 958 12 HOH HOH . F 6 HOH A 59 959 34 HOH HOH . F 6 HOH A 60 960 59 HOH HOH . F 6 HOH A 61 961 20 HOH HOH . F 6 HOH A 62 962 218 HOH HOH . F 6 HOH A 63 963 13 HOH HOH . F 6 HOH A 64 964 27 HOH HOH . F 6 HOH A 65 965 8 HOH HOH . F 6 HOH A 66 966 33 HOH HOH . F 6 HOH A 67 967 46 HOH HOH . F 6 HOH A 68 968 115 HOH HOH . F 6 HOH A 69 969 75 HOH HOH . F 6 HOH A 70 970 144 HOH HOH . F 6 HOH A 71 971 26 HOH HOH . F 6 HOH A 72 972 4 HOH HOH . F 6 HOH A 73 973 60 HOH HOH . F 6 HOH A 74 974 142 HOH HOH . F 6 HOH A 75 975 21 HOH HOH . F 6 HOH A 76 976 52 HOH HOH . F 6 HOH A 77 977 7 HOH HOH . F 6 HOH A 78 978 139 HOH HOH . F 6 HOH A 79 979 67 HOH HOH . F 6 HOH A 80 980 2 HOH HOH . F 6 HOH A 81 981 137 HOH HOH . F 6 HOH A 82 982 127 HOH HOH . F 6 HOH A 83 983 146 HOH HOH . F 6 HOH A 84 984 66 HOH HOH . F 6 HOH A 85 985 120 HOH HOH . F 6 HOH A 86 986 88 HOH HOH . F 6 HOH A 87 987 90 HOH HOH . F 6 HOH A 88 988 39 HOH HOH . F 6 HOH A 89 989 40 HOH HOH . F 6 HOH A 90 990 68 HOH HOH . F 6 HOH A 91 991 6 HOH HOH . F 6 HOH A 92 992 31 HOH HOH . F 6 HOH A 93 993 73 HOH HOH . F 6 HOH A 94 994 100 HOH HOH . F 6 HOH A 95 995 113 HOH HOH . F 6 HOH A 96 996 82 HOH HOH . F 6 HOH A 97 997 129 HOH HOH . F 6 HOH A 98 998 81 HOH HOH . F 6 HOH A 99 999 38 HOH HOH . F 6 HOH A 100 1000 36 HOH HOH . F 6 HOH A 101 1001 77 HOH HOH . F 6 HOH A 102 1002 35 HOH HOH . F 6 HOH A 103 1003 87 HOH HOH . F 6 HOH A 104 1004 83 HOH HOH . F 6 HOH A 105 1005 106 HOH HOH . F 6 HOH A 106 1006 61 HOH HOH . F 6 HOH A 107 1007 92 HOH HOH . F 6 HOH A 108 1008 64 HOH HOH . F 6 HOH A 109 1009 48 HOH HOH . F 6 HOH A 110 1010 136 HOH HOH . F 6 HOH A 111 1011 54 HOH HOH . F 6 HOH A 112 1012 105 HOH HOH . F 6 HOH A 113 1013 116 HOH HOH . F 6 HOH A 114 1014 71 HOH HOH . F 6 HOH A 115 1015 84 HOH HOH . F 6 HOH A 116 1016 124 HOH HOH . F 6 HOH A 117 1017 125 HOH HOH . F 6 HOH A 118 1018 1 HOH HOH . F 6 HOH A 119 1019 78 HOH HOH . F 6 HOH A 120 1020 58 HOH HOH . F 6 HOH A 121 1021 79 HOH HOH . F 6 HOH A 122 1022 141 HOH HOH . F 6 HOH A 123 1023 114 HOH HOH . F 6 HOH A 124 1024 119 HOH HOH . F 6 HOH A 125 1025 131 HOH HOH . F 6 HOH A 126 1026 94 HOH HOH . F 6 HOH A 127 1027 96 HOH HOH . F 6 HOH A 128 1028 148 HOH HOH . F 6 HOH A 129 1029 135 HOH HOH . F 6 HOH A 130 1030 63 HOH HOH . F 6 HOH A 131 1031 85 HOH HOH . F 6 HOH A 132 1032 101 HOH HOH . F 6 HOH A 133 1033 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 34.572 -22.047 -24.649 1 105.01 ? PB ADP 802 A 1 HETATM 2 O O1B ADP . . . C 3 34.525 -21.523 -26.082 1 102.68 ? O1B ADP 802 A 1 HETATM 3 O O2B ADP . . . C 3 34.044 -23.49 -24.629 1 93.75 ? O2B ADP 802 A 1 HETATM 4 O O3B ADP . . . C 3 35.934 -21.917 -24.051 1 99.01 ? O3B ADP 802 A 1 HETATM 5 P PA ADP . . . C 3 33.66 -19.583 -23.496 1 98.47 ? PA ADP 802 A 1 HETATM 6 O O1A ADP . . . C 3 34.796 -19.011 -24.244 1 94.22 ? O1A ADP 802 A 1 HETATM 7 O O2A ADP . . . C 3 32.285 -18.967 -23.749 1 89.76 ? O2A ADP 802 A 1 HETATM 8 O O3A ADP . . . C 3 33.548 -21.139 -23.826 1 95.45 ? O3A ADP 802 A 1 HETATM 9 O O5' ADP . . . C 3 33.928 -19.422 -21.913 1 86.92 ? O5' ADP 802 A 1 HETATM 10 C C5' ADP . . . C 3 35.167 -18.959 -21.346 1 85.53 ? C5' ADP 802 A 1 HETATM 11 C C4' ADP . . . C 3 35.62 -19.922 -20.278 1 81.74 ? C4' ADP 802 A 1 HETATM 12 O O4' ADP . . . C 3 34.854 -19.708 -19.071 1 80.11 ? O4' ADP 802 A 1 HETATM 13 C C3' ADP . . . C 3 35.446 -21.399 -20.608 1 80.17 ? C3' ADP 802 A 1 HETATM 14 O O3' ADP . . . C 3 36.576 -21.9 -21.313 1 79.52 ? O3' ADP 802 A 1 HETATM 15 C C2' ADP . . . C 3 35.322 -22.036 -19.223 1 79.52 ? C2' ADP 802 A 1 HETATM 16 O O2' ADP . . . C 3 36.578 -22.357 -18.636 1 75.07 ? O2' ADP 802 A 1 HETATM 17 C C1' ADP . . . C 3 34.583 -20.945 -18.438 1 81.89 ? C1' ADP 802 A 1 HETATM 18 N N9 ADP . . . C 3 33.14 -21.145 -18.411 1 83.07 ? N9 ADP 802 A 1 HETATM 19 C C8 ADP . . . C 3 32.184 -20.441 -19.096 1 81.75 ? C8 ADP 802 A 1 HETATM 20 N N7 ADP . . . C 3 30.964 -20.89 -18.928 1 78.89 ? N7 ADP 802 A 1 HETATM 21 C C5 ADP . . . C 3 31.127 -21.965 -18.067 1 78.96 ? C5 ADP 802 A 1 HETATM 22 C C6 ADP . . . C 3 30.213 -22.871 -17.497 1 74.83 ? C6 ADP 802 A 1 HETATM 23 N N6 ADP . . . C 3 28.897 -22.859 -17.741 1 70.29 ? N6 ADP 802 A 1 HETATM 24 N N1 ADP . . . C 3 30.706 -23.817 -16.664 1 77.07 ? N1 ADP 802 A 1 HETATM 25 C C2 ADP . . . C 3 32.021 -23.851 -16.432 1 75.75 ? C2 ADP 802 A 1 HETATM 26 N N3 ADP . . . C 3 32.975 -23.057 -16.917 1 76.58 ? N3 ADP 802 A 1 HETATM 27 C C4 ADP . . . C 3 32.462 -22.13 -17.734 1 79.62 ? C4 ADP 802 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #