data_6MVE # _model_server_result.job_id S200-xq9pDsEptXx8DRIGA _model_server_result.datetime_utc '2024-11-27 15:52:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mve # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 6MVE # _exptl.entry_id 6MVE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MVE _cell.length_a 126.413 _cell.length_b 126.413 _cell.length_c 125.488 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MVE _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 62.744 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O1A TTP . A TTP 801 1_555 E MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc2 B O1B TTP . A TTP 801 1_555 E MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc3 B O1G TTP . A TTP 801 1_555 E MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc4 E MG MG . A MG 804 1_555 F O HOH . A HOH 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc5 E MG MG . A MG 804 1_555 F O HOH . A HOH 980 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc6 E MG MG . A MG 804 1_555 F O HOH . A HOH 1018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6MVE _atom_sites.fract_transf_matrix[1][1] 0.007911 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TTP A 1 801 801 TTP TTP . C 3 ADP A 1 802 901 ADP ADP . D 4 ATP A 1 803 1001 ATP ATP . E 5 MG A 1 804 1 MG MG . F 6 HOH A 1 901 130 HOH HOH . F 6 HOH A 2 902 80 HOH HOH . F 6 HOH A 3 903 143 HOH HOH . F 6 HOH A 4 904 9 HOH HOH . F 6 HOH A 5 905 111 HOH HOH . F 6 HOH A 6 906 47 HOH HOH . F 6 HOH A 7 907 44 HOH HOH . F 6 HOH A 8 908 14 HOH HOH . F 6 HOH A 9 909 19 HOH HOH . F 6 HOH A 10 910 107 HOH HOH . F 6 HOH A 11 911 69 HOH HOH . F 6 HOH A 12 912 42 HOH HOH . F 6 HOH A 13 913 25 HOH HOH . F 6 HOH A 14 914 123 HOH HOH . F 6 HOH A 15 915 89 HOH HOH . F 6 HOH A 16 916 217 HOH HOH . F 6 HOH A 17 917 3 HOH HOH . F 6 HOH A 18 918 74 HOH HOH . F 6 HOH A 19 919 49 HOH HOH . F 6 HOH A 20 920 55 HOH HOH . F 6 HOH A 21 921 118 HOH HOH . F 6 HOH A 22 922 91 HOH HOH . F 6 HOH A 23 923 15 HOH HOH . F 6 HOH A 24 924 29 HOH HOH . F 6 HOH A 25 925 22 HOH HOH . F 6 HOH A 26 926 102 HOH HOH . F 6 HOH A 27 927 86 HOH HOH . F 6 HOH A 28 928 112 HOH HOH . F 6 HOH A 29 929 70 HOH HOH . F 6 HOH A 30 930 18 HOH HOH . F 6 HOH A 31 931 97 HOH HOH . F 6 HOH A 32 932 57 HOH HOH . F 6 HOH A 33 933 126 HOH HOH . F 6 HOH A 34 934 103 HOH HOH . F 6 HOH A 35 935 10 HOH HOH . F 6 HOH A 36 936 43 HOH HOH . F 6 HOH A 37 937 138 HOH HOH . F 6 HOH A 38 938 76 HOH HOH . F 6 HOH A 39 939 11 HOH HOH . F 6 HOH A 40 940 65 HOH HOH . F 6 HOH A 41 941 99 HOH HOH . F 6 HOH A 42 942 145 HOH HOH . F 6 HOH A 43 943 5 HOH HOH . F 6 HOH A 44 944 37 HOH HOH . F 6 HOH A 45 945 51 HOH HOH . F 6 HOH A 46 946 30 HOH HOH . F 6 HOH A 47 947 32 HOH HOH . F 6 HOH A 48 948 104 HOH HOH . F 6 HOH A 49 949 50 HOH HOH . F 6 HOH A 50 950 24 HOH HOH . F 6 HOH A 51 951 53 HOH HOH . F 6 HOH A 52 952 16 HOH HOH . F 6 HOH A 53 953 93 HOH HOH . F 6 HOH A 54 954 95 HOH HOH . F 6 HOH A 55 955 72 HOH HOH . F 6 HOH A 56 956 140 HOH HOH . F 6 HOH A 57 957 121 HOH HOH . F 6 HOH A 58 958 12 HOH HOH . F 6 HOH A 59 959 34 HOH HOH . F 6 HOH A 60 960 59 HOH HOH . F 6 HOH A 61 961 20 HOH HOH . F 6 HOH A 62 962 218 HOH HOH . F 6 HOH A 63 963 13 HOH HOH . F 6 HOH A 64 964 27 HOH HOH . F 6 HOH A 65 965 8 HOH HOH . F 6 HOH A 66 966 33 HOH HOH . F 6 HOH A 67 967 46 HOH HOH . F 6 HOH A 68 968 115 HOH HOH . F 6 HOH A 69 969 75 HOH HOH . F 6 HOH A 70 970 144 HOH HOH . F 6 HOH A 71 971 26 HOH HOH . F 6 HOH A 72 972 4 HOH HOH . F 6 HOH A 73 973 60 HOH HOH . F 6 HOH A 74 974 142 HOH HOH . F 6 HOH A 75 975 21 HOH HOH . F 6 HOH A 76 976 52 HOH HOH . F 6 HOH A 77 977 7 HOH HOH . F 6 HOH A 78 978 139 HOH HOH . F 6 HOH A 79 979 67 HOH HOH . F 6 HOH A 80 980 2 HOH HOH . F 6 HOH A 81 981 137 HOH HOH . F 6 HOH A 82 982 127 HOH HOH . F 6 HOH A 83 983 146 HOH HOH . F 6 HOH A 84 984 66 HOH HOH . F 6 HOH A 85 985 120 HOH HOH . F 6 HOH A 86 986 88 HOH HOH . F 6 HOH A 87 987 90 HOH HOH . F 6 HOH A 88 988 39 HOH HOH . F 6 HOH A 89 989 40 HOH HOH . F 6 HOH A 90 990 68 HOH HOH . F 6 HOH A 91 991 6 HOH HOH . F 6 HOH A 92 992 31 HOH HOH . F 6 HOH A 93 993 73 HOH HOH . F 6 HOH A 94 994 100 HOH HOH . F 6 HOH A 95 995 113 HOH HOH . F 6 HOH A 96 996 82 HOH HOH . F 6 HOH A 97 997 129 HOH HOH . F 6 HOH A 98 998 81 HOH HOH . F 6 HOH A 99 999 38 HOH HOH . F 6 HOH A 100 1000 36 HOH HOH . F 6 HOH A 101 1001 77 HOH HOH . F 6 HOH A 102 1002 35 HOH HOH . F 6 HOH A 103 1003 87 HOH HOH . F 6 HOH A 104 1004 83 HOH HOH . F 6 HOH A 105 1005 106 HOH HOH . F 6 HOH A 106 1006 61 HOH HOH . F 6 HOH A 107 1007 92 HOH HOH . F 6 HOH A 108 1008 64 HOH HOH . F 6 HOH A 109 1009 48 HOH HOH . F 6 HOH A 110 1010 136 HOH HOH . F 6 HOH A 111 1011 54 HOH HOH . F 6 HOH A 112 1012 105 HOH HOH . F 6 HOH A 113 1013 116 HOH HOH . F 6 HOH A 114 1014 71 HOH HOH . F 6 HOH A 115 1015 84 HOH HOH . F 6 HOH A 116 1016 124 HOH HOH . F 6 HOH A 117 1017 125 HOH HOH . F 6 HOH A 118 1018 1 HOH HOH . F 6 HOH A 119 1019 78 HOH HOH . F 6 HOH A 120 1020 58 HOH HOH . F 6 HOH A 121 1021 79 HOH HOH . F 6 HOH A 122 1022 141 HOH HOH . F 6 HOH A 123 1023 114 HOH HOH . F 6 HOH A 124 1024 119 HOH HOH . F 6 HOH A 125 1025 131 HOH HOH . F 6 HOH A 126 1026 94 HOH HOH . F 6 HOH A 127 1027 96 HOH HOH . F 6 HOH A 128 1028 148 HOH HOH . F 6 HOH A 129 1029 135 HOH HOH . F 6 HOH A 130 1030 63 HOH HOH . F 6 HOH A 131 1031 85 HOH HOH . F 6 HOH A 132 1032 101 HOH HOH . F 6 HOH A 133 1033 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 51.603 -29.985 -21.634 1 119.34 ? PG ATP 803 A 1 HETATM 2 O O1G ATP . . . D 4 51.56 -31.19 -22.575 1 113.73 ? O1G ATP 803 A 1 HETATM 3 O O2G ATP . . . D 4 51.948 -30.345 -20.209 1 110.64 ? O2G ATP 803 A 1 HETATM 4 O O3G ATP . . . D 4 52.542 -28.925 -22.216 1 115.34 ? O3G ATP 803 A 1 HETATM 5 P PB ATP . . . D 4 49.821 -27.934 -20.945 1 107.29 ? PB ATP 803 A 1 HETATM 6 O O1B ATP . . . D 4 50.734 -26.843 -21.39 1 103.79 ? O1B ATP 803 A 1 HETATM 7 O O2B ATP . . . D 4 48.326 -27.677 -21.105 1 107.54 ? O2B ATP 803 A 1 HETATM 8 O O3B ATP . . . D 4 50.165 -29.302 -21.677 1 106.1 ? O3B ATP 803 A 1 HETATM 9 P PA ATP . . . D 4 49.884 -27.6 -18.054 1 88.91 ? PA ATP 803 A 1 HETATM 10 O O1A ATP . . . D 4 49.558 -26.171 -18.279 1 89 ? O1A ATP 803 A 1 HETATM 11 O O2A ATP . . . D 4 51.108 -27.883 -17.19 1 83.93 ? O2A ATP 803 A 1 HETATM 12 O O3A ATP . . . D 4 50.067 -28.373 -19.434 1 95.1 ? O3A ATP 803 A 1 HETATM 13 O O5' ATP . . . D 4 48.634 -28.318 -17.332 1 89.28 ? O5' ATP 803 A 1 HETATM 14 C C5' ATP . . . D 4 48.358 -29.729 -17.209 1 77.7 ? C5' ATP 803 A 1 HETATM 15 C C4' ATP . . . D 4 46.966 -29.787 -16.64 1 70.56 ? C4' ATP 803 A 1 HETATM 16 O O4' ATP . . . D 4 46.916 -28.952 -15.457 1 69.7 ? O4' ATP 803 A 1 HETATM 17 C C3' ATP . . . D 4 45.876 -29.267 -17.583 1 63.4 ? C3' ATP 803 A 1 HETATM 18 O O3' ATP . . . D 4 44.831 -30.214 -17.768 1 57.19 ? O3' ATP 803 A 1 HETATM 19 C C2' ATP . . . D 4 45.397 -27.974 -16.912 1 67.06 ? C2' ATP 803 A 1 HETATM 20 O O2' ATP . . . D 4 44.003 -27.784 -17.097 1 66.68 ? O2' ATP 803 A 1 HETATM 21 C C1' ATP . . . D 4 45.692 -28.259 -15.449 1 65.65 ? C1' ATP 803 A 1 HETATM 22 N N9 ATP . . . D 4 45.809 -27.073 -14.6 1 69.03 ? N9 ATP 803 A 1 HETATM 23 C C8 ATP . . . D 4 45.108 -26.865 -13.439 1 68.3 ? C8 ATP 803 A 1 HETATM 24 N N7 ATP . . . D 4 45.329 -25.702 -12.876 1 68.97 ? N7 ATP 803 A 1 HETATM 25 C C5 ATP . . . D 4 46.247 -25.097 -13.721 1 76.52 ? C5 ATP 803 A 1 HETATM 26 C C6 ATP . . . D 4 46.884 -23.838 -13.684 1 80.16 ? C6 ATP 803 A 1 HETATM 27 N N6 ATP . . . D 4 46.657 -22.907 -12.74 1 79.16 ? N6 ATP 803 A 1 HETATM 28 N N1 ATP . . . D 4 47.761 -23.553 -14.674 1 85.26 ? N1 ATP 803 A 1 HETATM 29 C C2 ATP . . . D 4 47.976 -24.465 -15.63 1 81.66 ? C2 ATP 803 A 1 HETATM 30 N N3 ATP . . . D 4 47.426 -25.674 -15.774 1 78.49 ? N3 ATP 803 A 1 HETATM 31 C C4 ATP . . . D 4 46.562 -25.934 -14.785 1 77.06 ? C4 ATP 803 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #